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LOCUS NM_001272533 2006 bp mRNA linear INV 26-DEC-2023 variant K (CkIIbeta), mRNA. ACCESSION NM_001272533 VERSION NM_001272533.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2006) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2006) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2006) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2006) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2006) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2006) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2006) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2006) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2006) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2006) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2006) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2006) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2006) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2006) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2006) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2006) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2006) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2006) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2006) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2006) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2006) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2006) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2006) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2006 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2006 /gene="CkIIbeta" /locus_tag="Dmel_CG15224" /gene_synonym="And; betaCK2; Cask-II-b; CCK2; CG15224; CK II; CK-2; CK-II beta; Ck-IIbeta; CK-IIbeta; CK2; CK2-beta; ck2beta; Ck2beta; CK2beta; CkII; CKII; CKII beta; CkII-beta; CKII-beta1; CKIIb; Ckiibeta; CKIIbeta; CkIIbeta1; dCK2beta; dCKII; dCKII beta; Dm-CK2-beta; DmCK2beta; DmCkIIbeta; DmCKIIbeta; Dmel\CG15224; Ds cas kin; KC2B_DROME; mbu" /note="Casein kinase II beta subunit" /map="10E3-10E3" /db_xref="FLYBASE:FBgn0000259" /db_xref="GeneID:32132" CDS 406..1110 /gene="CkIIbeta" /locus_tag="Dmel_CG15224" /gene_synonym="And; betaCK2; Cask-II-b; CCK2; CG15224; CK II; CK-2; CK-II beta; Ck-IIbeta; CK-IIbeta; CK2; CK2-beta; ck2beta; Ck2beta; CK2beta; CkII; CKII; CKII beta; CkII-beta; CKII-beta1; CKIIb; Ckiibeta; CKIIbeta; CkIIbeta1; dCK2beta; dCKII; dCKII beta; Dm-CK2-beta; DmCK2beta; DmCkIIbeta; DmCKIIbeta; Dmel\CG15224; Ds cas kin; KC2B_DROME; mbu" /note="CG15224 gene product from transcript CG15224-RK; CG15224-PK; CkIIbeta-PK; mushroom bodies undersized; CK2 (beta subunit); casein kinase II beta; casein kinase 2 regulatory subunit; andante" /codon_start=1 /product="casein kinase II beta subunit, isoform K" /protein_id="NP_001259462.1" /db_xref="FLYBASE:FBpp0305406" /db_xref="GeneID:32132" /db_xref="FLYBASE:FBgn0000259" /translation="MSSSEEVSWVTWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVP NYRQALDMILDLEPEDELEDNPLQSDMTEQAAEMLYGLIHARYILTNRGIAQMIEKYQ TGDFGHCPRVYCESQPMLPLGLSDIPGEAMVKTYCPKCIDVYTPKSSRHHHTDGAYFG TGFPHMLFMVHPEYRPKRPTNQFVPRLYGFKIHSLAYQIQLQAAANFKMPLRAPEAPV KRAKIPKVVAGKKIPT" misc_feature 427..978 /gene="CkIIbeta" /locus_tag="Dmel_CG15224" /gene_synonym="And; betaCK2; Cask-II-b; CCK2; CG15224; CK II; CK-2; CK-II beta; Ck-IIbeta; CK-IIbeta; CK2; CK2-beta; ck2beta; Ck2beta; CK2beta; CkII; CKII; CKII beta; CkII-beta; CKII-beta1; CKIIb; Ckiibeta; CKIIbeta; CkIIbeta1; dCK2beta; dCKII; dCKII beta; Dm-CK2-beta; DmCK2beta; DmCkIIbeta; DmCKIIbeta; Dmel\CG15224; Ds cas kin; KC2B_DROME; mbu" /note="Casein kinase II regulatory subunit; Region: CK_II_beta; smart01085" /db_xref="CDD:198153" ORIGIN 1 acagtgtgtg cttcttcttg ctgctcggca cattttgtat gagcgcttgt caattgtcac 61 aatacgagta taaaaattta tttttatgcc ccccgaccac acgaatttca acggtgcgat 121 caccgaaaac tagtaacatt gtacaagcaa cgcgaattaa acggaaaacc gaaaacaaaa 181 accccaaaag gccaatccaa ccaaaaaaaa agaggaggaa agaagaaaaa agcggaaaaa 241 gagagtgtgg tttgtgcgag caacaagaag cggaaccaaa aggaaacgtg aagaaagcag 301 ggggggtggg gtagacaaga aagtgccaag attccgttcc aagatatttt aacaataaat 361 ttcgcacgcc agcccaaatt acgcaaaata atccccttaa tcaaaatgag cagctccgag 421 gaagtctcct gggtcacctg gttctgtgga cttcgtggca atgagttctt ctgcgaggtg 481 gatgaggact acatacagga taaattcaat ttaactggtt taaatgagca ggtacccaac 541 tatcggcaag cgttggacat gatcttggac ttggaaccgg aggacgagct cgaggacaat 601 ccactgcagt ccgacatgac cgagcaggcc gccgagatgc tctacggcct catacacgcc 661 agatatatac taacaaatcg cggcatcgct caaatgatcg agaaatatca aactggcgat 721 ttcggacatt gtccacgtgt ctactgtgaa agtcagccca tgctgccatt gggtctgtcg 781 gacatccccg gcgaggcaat ggttaagacc tattgcccca agtgcattga cgtgtacaca 841 ccaaaatcgt cgcgtcacca ccataccgat ggcgcctatt tcggcactgg atttccacac 901 atgctcttca tggtgcatcc cgaatatcgt cccaagcgtc ctactaatca gtttgttcca 961 aggctatatg gatttaaaat acacagctta gcttatcaaa ttcagctgca ggcagcagcc 1021 aattttaaaa tgccactacg agcgcccgaa gcgccagtca aacgcgcgaa gattcccaaa 1081 gtagtggccg gcaagaagat ccctacttaa ggaaagaagt taccggaacc ccaactccca 1141 aagaagtaga cgaaaattaa tgaaaccaac aaaaacatac agtacagtca tccccatcca 1201 accgaacacc cactcactca cccactgatt tacacacaca catcgacgcg ctcacacaca 1261 tagataccgc atgacccccc taataccaac acccacccat acacagaatg aatgcaaatg 1321 aacggaagca aaagcaacca cttggaacat aaggatgtgg atcgaagaag aggatgaaga 1381 ttggcagcag gacacgagca acgaaccgaa cgaatcaagc cccaaaattc caacagacac 1441 acacacaatg aaacaagtac acatacacac ccacacacac actcatgagc atgcacggac 1501 aagcggaaag caaaacaatg gcagaaggat cccttttcca tgatgtgcac acactgttat 1561 ccaaccgata gttacggcaa gtgttgccct atcgttccca gaagcaataa caaacttgta 1621 gcagtgttca acaatcaatc aaaagcgcaa taagaaaacg aatgataaat aaattgatat 1681 gtgaagccag cattaaattt cgttgcggat tgtttgtgtt cgttcagtaa agtaaagaat 1741 acaaaaaaaa aagaaaataa cgaaacgtac ataatacata tatagctttg gctttgttcc 1801 agttgtagcg gcattaatcg gtatagttta gttttttaag ggtccaaaat tggaaacttt 1861 tccatttcta attctactga attcaaatcg ccctcccctt gttgttcttt tctttttcta 1921 attcttaact ctaaacgtat tgtatgtagt gcgcaaaagc attttcaccc atttgtaata 1981 atgtagagaa tagaaattct tctgcc