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LOCUS NM_001272532 3196 bp mRNA linear INV 26-DEC-2023 transcript variant C (Tango10), mRNA. ACCESSION NM_001272532 VERSION NM_001272532.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3196) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3196) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3196) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3196) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3196) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3196) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3196) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3196) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3196) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3196) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3196) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3196) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3196) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3196) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3196) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3196) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3196) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3196) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3196) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3196) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3196) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3196) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3196) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001272532.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3196 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3196 /gene="Tango10" /locus_tag="Dmel_CG1841" /gene_synonym="CG1841; Dmel\CG1841; tango10; TANGO10" /note="Transport and Golgi organization 10" /map="10D7-10D8" /db_xref="FLYBASE:FBgn0030330" /db_xref="GeneID:32125" CDS 367..2130 /gene="Tango10" /locus_tag="Dmel_CG1841" /gene_synonym="CG1841; Dmel\CG1841; tango10; TANGO10" /note="CG1841 gene product from transcript CG1841-RC; CG1841-PC; Tango10-PC; transport and golgi organization" /codon_start=1 /product="transport and golgi organization 10, isoform C" /protein_id="NP_001259461.1" /db_xref="FLYBASE:FBpp0305171" /db_xref="GeneID:32125" /db_xref="FLYBASE:FBgn0030330" /translation="MNDNGNGGAAPVSGGVCGVGGAHGAAGGADGAGGAGGGGGCGAG GGGAGAGPGGGPGGGAAAADLAGEAAGGAAGGDAAINNQANANGTSESPAKGLNSSED LDAKRRKCRETEEGQDEASTMIDANSVLNKIANLYAEQLMSDIVLLVDGKEFPAHRVI LCASSDVFQVMLMNPEWNECSKHVIELHEEACCSAVFPQFIKYLYVGQIEVTLQTVMP MLALSDKYNIRDLIDLCVDYMNKHVAKAATSGYLVSWLQYTLSFTPTHNDLTETLKRF LKWNLEMVAESRDFVEMDPAILILLLQQNDLVVTSEYKLFDILQTWLLHRREQMEATG SGGFMELIEQTVSHIRFGMMTPRQLSHLLMDPLVEYHKEFLVERIAIGMSYQSGHEDR VREVRATESGKLQFTPRLYWNDTWSVDIDVHNFTAIEDYKNYVTCFFSQRHIAETEED DPCMTWEIEFFPRGVRYNKAKMVWGEDVPGCSLNTVRLRVTCKHQNIGEERFKIAVLI VGMQNQIMHIRTVVERTEYFSDTSRVVNLDNLLPYEELEHTSLYLSPHLTGTARNTLT LHVVITPMGSHTCRDTPPFQF" misc_feature 742..1083 /gene="Tango10" /locus_tag="Dmel_CG1841" /gene_synonym="CG1841; Dmel\CG1841; tango10; TANGO10" /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in BTB/POZ domain-containing protein 17 (BTBD17); Region: BTB_POZ_BTBD17; cd18292" /db_xref="CDD:349601" misc_feature 1114..1335 /gene="Tango10" /locus_tag="Dmel_CG1841" /gene_synonym="CG1841; Dmel\CG1841; tango10; TANGO10" /note="BACK (BTB and C-terminal Kelch) domain found in BTB/POZ domain-containing protein 17 (BTBD17); Region: BACK_BTBD17; cd18493" /db_xref="CDD:350568" ORIGIN 1 gggctgccag atctacgtaa tggataaatg tatttatatg gcacttaatt aaatgttgtg 61 ttatttttat ctaaaattgc ggaacccggg aaaatacaac tgaaaatgaa attgcatttg 121 tcggatccac aagaatacaa ttattacgga tgcgacgaat ccatccatat atcgcatatg 181 aagtgccatc ggtctgccct gctgtttgca atccatgcct ggcacactgc tgctgcgata 241 taaatcgtat cgtgtctgca tctgtctgtc gttgtttttg catttgaagt tgtccttgtg 301 cacgttgtca gcgcagaaca aatccctagc cgggtgccag tctataccta atatccccgt 361 ttcccgatga acgacaacgg taacggcgga gcagcgccag tctccggtgg agtgtgcggt 421 gttggtggtg cgcacggagc ggctggtggc gctgatggtg ctggtggtgc tggcggtggc 481 ggcggatgcg gggctggcgg tggaggtgct ggtgcaggtc cgggcggggg tcccgggggc 541 ggagcagctg ctgcggacct ggctggcgag gcagctggag gagcagcagg tggtgatgca 601 gccattaata accaagctaa tgccaatgga accagcgaga gcccagcgaa aggacttaat 661 tctagcgagg atctggacgc caagcggcgc aagtgtcgcg aaacggaaga aggccaggat 721 gaagccagca cgatgatcga tgcgaatagt gtgctcaata agatcgccaa cctgtacgcc 781 gaacagctga tgtcggacat agtgctactg gtggacggca aggagtttcc cgcccaccgc 841 gtcatcctct gtgccagcag cgacgtcttt caggtgatgc taatgaatcc ggagtggaac 901 gagtgcagca agcacgtgat cgaattgcac gaggaagcct gctgttcggc ggtgtttccg 961 cagttcatca agtacctata cgttggccaa atcgaggtca cgctgcagac ggtgatgcca 1021 atgctggcgc tgagcgacaa gtacaatata cgcgacctga tcgatctctg cgtggactac 1081 atgaacaagc acgtggccaa ggcggccacc agcggttatc ttgtgtcctg gctgcaatat 1141 acgctctcct tcacgcccac ccacaacgat ctcaccgaaa cactcaagcg gtttctcaaa 1201 tggaacctcg agatggttgc cgagtcgcgg gactttgttg aaatggaccc ggccatactg 1261 atactgctgt tgcagcagaa cgatctggtt gtcaccagcg agtacaaatt gtttgacatc 1321 ctgcagacgt ggctgctgca tcgtcgcgaa cagatggagg ccactggcag tggcggtttc 1381 atggaactga tcgaacagac tgtgtcccac atacgcttcg gcatgatgac gccgcgccag 1441 ctctcacacc tgctaatgga tccgctggtc gagtatcaca aagagttcct cgtcgagcgc 1501 attgccatcg gcatgagcta tcaatcgggc catgaggatc gggtgcgaga ggtgcgagcc 1561 accgaatcgg gtaagctgca gtttacgccg cggctatatt ggaacgacac ctggagcgtc 1621 gacatcgatg tgcacaactt taccgcgatc gaggattata agaactatgt gacctgcttc 1681 ttttcgcagc gacacattgc cgagactgag gaggacgatc cctgcatgac atgggaaatc 1741 gagtttttcc cgcgaggcgt taggtataac aaggccaaaa tggtatgggg cgaggacgta 1801 ccaggctgct ctttgaacac agtgcgtcta cgggttacct gcaagcatca aaacatcgga 1861 gaggagcgat ttaagatcgc cgtgctgatc gttggcatgc aaaaccagat tatgcacatc 1921 cgcacagttg tagagcgtac ggagtacttc tccgatacgt cgcgcgtcgt caacctggac 1981 aacctgctgc cgtacgagga gctggagcac acatcactgt acttgagtcc ccatctgacg 2041 ggcaccgctc gcaacacgct taccctgcac gtggtcatca cgccgatggg ctcccacacc 2101 tgccgagata cgccgccgtt tcagttctaa aaaaaaaaaa cacaaattat gaagcggtcc 2161 tgtgggcatc tcaactatag cactccgtac ttcccggcgc atccacaggc acctcatgca 2221 tccacagcca ccactgtatt tcaaactacc atttaacatg tgtatgtatg taaaaatcca 2281 atgcgactgc gaatcccatg ggctcaacct ttgcgatctt aactggcggt ctacaccggc 2341 ccccaatcga tcacaactcg attgcaatat gatttgttat tagtttattg ttttatatta 2401 cactatttcc tttaagttag gcgcagcgag agttactgag tgagtgagtt cgtaggcaga 2461 gccatattaa agtgattgat tggacacgac gcccatttgg tactgtattc accttaccat 2521 ttcgcagaat taccgcaaat gaaaatggac tatggaaagg agtttttcta ataaacgtta 2581 aactgtaaac taaaaaagaa aaccataaaa tcgccgacga catggctgag aaagagagag 2641 agggtcacta tttggctatt tgccatctcg tttgcatgag gcatcagttt taatgtttta 2701 cagcgcccgc ttaggctttt ggatcccttt ttacgagtgc gtttatggcc cgggatcaac 2761 atgtcgcgtc tcgggggcct atctttatgt gtgctctact gtccatatag tctacagtgc 2821 ggaacatcaa atatgtcata tttagatggg actctgggct ctggtctccg gatatccaga 2881 tatccagata gccagatagc caagacataa cgaatataca tgcacagatg tgtgaatcgg 2941 ttcaggtatc ggccatcaat cgaattgatt taatcttggc gttaatgtag ttgttaaata 3001 aaatgtctct tcaaaaatca gctgtggtct attattatta tgcgttttca ttagactgaa 3061 ctaaagagtg tagaattact gtcatttaac gatataattt agtgatttcg gttttaatta 3121 aattattgcc taacgttgac cagtcatttt gtaaaataac gtctctgaga aacctggaat 3181 aaaggtgtgt aaaact