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LOCUS NM_001272509 1827 bp mRNA linear INV 26-DEC-2023 D (CG42249), mRNA. ACCESSION NM_001272509 VERSION NM_001272509.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 1827) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1827) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1827) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 1827) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 1827) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 1827) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 1827) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 1827) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 1827) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 1827) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 1827) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 1827) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 1827) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 1827) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 1827) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 1827) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 1827) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 1827) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 1827) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 1827) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 1827) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 1827) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 1827) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1827 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..1827 /gene="CG42249" /locus_tag="Dmel_CG42249" /old_locus_tag="Dmel_CG11126" /old_locus_tag="Dmel_CG1961" /gene_synonym="CG11126; CG1961; Dmel\CG42249" /map="10A4-10A4" /db_xref="FLYBASE:FBgn0259101" /db_xref="GeneID:32043" CDS 81..1757 /gene="CG42249" /locus_tag="Dmel_CG42249" /old_locus_tag="Dmel_CG11126" /old_locus_tag="Dmel_CG1961" /gene_synonym="CG11126; CG1961; Dmel\CG42249" /EC_number="3.-.-.-" /EC_number="3.1.-.-" /note="CG42249 gene product from transcript CG42249-RD; CG42249-PD" /codon_start=1 /product="uncharacterized protein, isoform D" /protein_id="NP_001259438.1" /db_xref="FLYBASE:FBpp0304658" /db_xref="GeneID:32043" /db_xref="FLYBASE:FBgn0259101" /translation="MATACNRLTWSLVVVVAVMAVMCSSAEAADKEGFPVAIIHINDL HARFEATDTSGGTCDEGEECIGGYPRTVYTVKRLLQEQAELNPIYINAGDSFQGTLWY NIGRWNVTQQLLNLLPADVMTLGNHEFDHGVEGVVPFLETVDTNMLVANMDCAHEPTM EGKYNKSMIIERSGRKIGVIGVILETTYDLANTGKVIFRNESDTIREEAQLLKAQGAN IIIVVSHCGYDVDQQIAANAGDWIDVIVGSHSHTFLYTGDPPGPHTPSGDYPTEVIHS SGHRVLIVQASAYARYVGNLIVYFDDNGDVLDYEGDPLYMDQSVPEDDIVLQAMVPWQ LEMKPIAERTVGQSRVNLQQSQCSSGECNLGNFFTDAMLHAFVKDASSSSEESWSNVT IALTSTGTFRVPIPAGNITYKQLFAMCPWQNRLVTLSLRGKHIVELLEHVVAPMNASS ATPRSSRFLQVSGLRIRYDLNADQRVFSVRVRCSKCLVPRYIPLDLEHKYRVVVMEYL ANGKNGFSVISENAEDPEFGPFDLDALMDYMNSTGPITTAIEQRIQFVTT" misc_feature 186..1028 /gene="CG42249" /locus_tag="Dmel_CG42249" /old_locus_tag="Dmel_CG11126" /old_locus_tag="Dmel_CG1961" /gene_synonym="CG11126; CG1961; Dmel\CG42249" /note="CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain; Region: MPP_CD73_N; cd07409" /db_xref="CDD:277354" misc_feature order(207..209,213..215,360..362,456..461,468..470, 648..650,753..755,825..827,831..833) /gene="CG42249" /locus_tag="Dmel_CG42249" /gene_synonym="CG11126; CG1961; Dmel\CG42249" /note="active site" /db_xref="CDD:277354" misc_feature order(207..209,213..215,360..362,456..458,753..755, 825..827,831..833) /gene="CG42249" /locus_tag="Dmel_CG42249" /gene_synonym="CG11126; CG1961; Dmel\CG42249" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:277354" misc_feature 1113..1640 /gene="CG42249" /locus_tag="Dmel_CG42249" /old_locus_tag="Dmel_CG11126" /old_locus_tag="Dmel_CG1961" /gene_synonym="CG11126; CG1961; Dmel\CG42249" /note="5'-nucleotidase, C-terminal domain; Region: 5_nucleotid_C; pfam02872" /db_xref="CDD:427027" ORIGIN 1 aattgcaata aacggtcgct tgcgatcttc aaaatcaaat cgataacttg caggtgcaga 61 ttctggtgcg ttggagtaaa atggcaaccg cttgcaatcg actgacatgg tcgctggtag 121 tggtggtggc ggtgatggcg gtcatgtgct catccgcgga ggctgccgac aaggagggct 181 ttcccgtggc cataatccac ataaatgatt tgcacgccag gttcgaggcc acggacacct 241 ccggtggcac ctgcgacgag ggcgaggagt gcatcggtgg ctatccgcgc accgtttaca 301 ccgtgaagcg tctgcttcag gagcaagcgg agctcaatcc catctacatc aatgccggcg 361 acagttttca gggcacgttg tggtacaaca tcggtcgatg gaacgttacg cagcagctgc 421 tgaaccttct gcccgccgat gtgatgaccc tcggcaatca cgagttcgat cacggtgtgg 481 agggcgtggt gccattccta gagacggtgg acaccaatat gctggtggcc aacatggact 541 gcgcccacga gcccaccatg gagggcaagt acaacaagtc gatgataatc gagcgatcgg 601 gccgcaagat tggtgtgatt ggtgttatcc tggagacaac ctacgatctg gccaataccg 661 gtaaggtgat ctttcgcaac gagagcgaca ccattcgcga ggaggcgcag ctgctgaagg 721 cccagggtgc caacatcatc attgtcgtct cccactgcgg ctacgatgtg gatcagcaga 781 tcgctgcgaa tgccggcgat tggatcgacg tcatcgttgg ctcccattcg cacaccttcc 841 tctacacggg tgatccgcct gggccacaca cgccatccgg tgattatccc accgaggtta 901 tccacagctc tggccaccgc gtgctcattg tccaggcatc ggcctatgcc cgctacgtgg 961 gcaacctgat cgtctatttc gatgacaacg gcgatgtgct ggactacgag ggtgatccgc 1021 tctacatgga ccaatccgtg ccagaagatg atatcgttct acaagccatg gtgccttggc 1081 aactcgagat gaaacccatt gccgagcgga cagtgggcca gagtcgcgtg aatctccagc 1141 agagtcagtg cagcagtggg gaatgcaatc tgggtaactt cttcaccgat gctatgcttc 1201 atgcgtttgt caaggatgct tcatcgtcgt ctgaagagag ttggagtaac gtgaccattg 1261 ccttgacatc aacgggaact tttcgagtgc ctattccagc tggcaacatc acctacaagc 1321 aattgtttgc catgtgccca tggcagaata gactggtgac cctcagtctg cgtggtaagc 1381 acattgtgga gctgctggag catgtggtgg cgcccatgaa tgccagttcg gccacgccgc 1441 gttcctcccg attcctccag gtttccggtc tccgtatccg ttacgatttg aacgccgatc 1501 agcgagtatt cagtgtgcga gtaagatgct ccaagtgcct ggtgcccagg tatattccac 1561 tcgatttgga gcacaagtac cgcgtggtcg tcatggagta cctggcgaat gggaagaacg 1621 gatttagcgt aatcagcgaa aatgcagaag atccagagtt tggtcctttc gacttggacg 1681 ccttaatgga ctacatgaac tccaccgggc caattacgac tgcaatcgag caaaggattc 1741 agtttgtaac tacttagact ttatagtatg gtcgaaaaat gtagtaaacc tatataataa 1801 aatatacata tgtatggttt cattttg