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LOCUS NM_001272501 3141 bp mRNA linear INV 26-DEC-2023 transcript variant E (Tango5), mRNA. ACCESSION NM_001272501 VERSION NM_001272501.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3141) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3141) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3141) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3141) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3141) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3141) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3141) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3141) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3141) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3141) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3141) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3141) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3141) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3141) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3141) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3141) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3141) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3141) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3141) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3141) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3141) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3141) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3141) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3141 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3141 /gene="Tango5" /locus_tag="Dmel_CG32675" /gene_synonym="CG1534; CG32675; Dmel\CG32675; TANGO5; vmp1" /note="Transport and Golgi organization 5" /map="9E4-9E6" /db_xref="FLYBASE:FBgn0052675" /db_xref="GeneID:326232" CDS 1111..2703 /gene="Tango5" /locus_tag="Dmel_CG32675" /gene_synonym="CG1534; CG32675; Dmel\CG32675; TANGO5; vmp1" /note="CG32675 gene product from transcript CG32675-RE; CG32675-PE; Tango5-PE" /codon_start=1 /product="transport and golgi organization 5, isoform E" /protein_id="NP_001259430.1" /db_xref="FLYBASE:FBpp0306533" /db_xref="GeneID:326232" /db_xref="FLYBASE:FBgn0052675" /translation="MSQHSKKETTSSSGSHAAQSNRHNNIGGGGGNGNSNSISGSSNN KSHKRQAANGSLKSPLLTITNINSHSQKGALKSPVSKVKQSSNSSSSNSNSKTLSGSS MQETGSSATSLLAAGGKAKKNQKDKQRERERLERGQLVLWRRPLQTTKYCGLELFTLL RTWSTRLLQQRLLLATLIVLSIVFSVIYKIDGPHQLAIEFVRRNTWFFVYWLGLGVLS SVGLGTGLHTFLLYLGPHIASVTLAAYECNSLRFPQPPYPDDIICPEEPYDKHVPNIW SIMSKVRLEAFLWGAGTALGELPPYFMAKAARLSGYDPEDAEELAEFEALNAKRHQKN LSMMDRGKLFMERVVERVGFFGILACASIPNPLFDLAGITCGHFLVPFWTFFGATLIG KAVIKMHIQKIFVIIAFNETLIERAVDLLATLPVLGHKLQEPFKSFLKNQKQRLHRQQ RGAAGATTGAGDSGNLLSRIFETFVIGMVCYFVVSIVNSLAQSYHKRLHKKPASPVAA TTPTRQSTGASKKAGKQKALRD" misc_feature <2146..2295 /gene="Tango5" /locus_tag="Dmel_CG32675" /gene_synonym="CG1534; CG32675; Dmel\CG32675; TANGO5; vmp1" /note="SNARE associated Golgi protein; Region: SNARE_assoc; cl00429" /db_xref="CDD:469768" ORIGIN 1 cgttggcctc gcagtttttc accgaaaagg ttttgtaaaa acaccgtgcc aaactgtcag 61 agaagcaggt aaactaaagt ccaccttgtc ggatcggcca ctgaaaagcc ggattaaaca 121 aacaacggac acgttaccga acagctcgga aaggtgcaga aaggaaacat cagatgaaaa 181 tctattagct gttgcgaatt gtttgttttt gctgtgctat tcgtgttttt gttgttgtgc 241 atatgattgt gtctctgttg ttgttggtgg tggtgttgct gttgtaactc gtgacgacgg 301 aaattagtaa caaagtgaaa attgagagtt caaaaaagaa gagaaccccg aaataactgt 361 tgtgtgggtg cgattgattt ttatgctttg tcgtctggtt tgttgttctt gctgtcagag 421 ggtggttgca acggaaaagc aacccaccac cccctgggtt tttgaactcc agcttatgaa 481 aaacagctgc agcgattgcc acacaaaaat tcaaatgttt aagtgagaaa agcgaaagag 541 aagtgaactt agcgcttatt gaattatggc taaacacgct gactagacca aatcgaaaga 601 acaaatgagt gctataataa caaaagtgcc agaaagtgaa acaataacaa caacagcaac 661 gacagcagtc gtgttattgt ccactcagct tgtttttgtt gttcgctttg tggccctgtt 721 tttcgcttct gttttgcgct tctgattctg aagtcgcctg cttcttgtgc cgcctcccct 781 tcctcccacc atacatccct ccctccctct ctttctgacc gccgtctctc ttttttacgc 841 gcatgtggat tcattttatt ggtgctcaag tatcgcatga taatctcacg ctacgtccct 901 cgtaattgtt gttgtaatcg ctgtcgttct gtcagcagaa tgtctttatt gttattgttg 961 ttgttgtgct tttccgccta acacacacta acacgcgcac acacaggcac acttgccgaa 1021 aaattgaagc cattctcgcc gcaaatcaaa ttcaattgag ggaaactatc aactaacccg 1081 cataaaaccg cttgcaagcc aaccgcttaa atgtcacagc attcgaaaaa ggaaaccacc 1141 agcagcagcg gtagccatgc ggcccagagc aatcgtcaca acaacatcgg cggcggcggc 1201 ggaaacggca atagcaacag catcagcggt agcagcaaca acaagagcca caagcggcag 1261 gcggccaatg gcagtctaaa gtcgccactc ctgacaatca ccaacatcaa ctcccacagc 1321 caaaaaggcg ctttgaaatc gcccgtcagc aaagtcaagc agagcagcaa cagcagcagt 1381 agcaacagta acagcaaaac cctcagcggg agcagcatgc aggagaccgg ctcatccgcc 1441 acatccttgc tggccgctgg cggcaaggcg aagaagaacc aaaaagacaa gcagcgcgag 1501 cgggaacgct tggaacgcgg ccagctggtc ctctggcgtc gtcccctgca gaccaccaag 1561 tactgcggcc tcgagctgtt caccttgctg cgcacgtgga gcaccagatt gctgcaacag 1621 cgtctcctgt tggccactct gatagtatta agcatcgtat ttagcgtaat ttacaagata 1681 gacggtcccc atcagttggc catcgagttt gtgcgccgga acacctggtt ctttgtctac 1741 tggttgggtc tgggcgtgct ctcctcggtg ggcttgggca ccggactgca cacgtttctg 1801 ctctatctgg ggccgcacat agccagtgtc acgctggccg cctacgagtg caattccctg 1861 cgattcccac agccaccgta tcccgatgat attatctgtc ccgaggagcc gtacgacaaa 1921 catgtgccaa atatctggtc cattatgtcc aaggtgcgcc tggaggcctt cctctgggga 1981 gcgggcacag cgctgggcga actgccaccg tactttatgg ccaaggcggc taggctgtcc 2041 ggctacgatc cggaggacgc cgaggagctg gccgagttcg aggccctcaa cgcgaagcgt 2101 caccaaaaga acctcagtat gatggacagg ggcaagctat tcatggagcg cgttgtggag 2161 cgcgtcggat tctttggcat cctggcctgt gcaagcattc ccaatcccct attcgacctg 2221 gcgggtatca cctgcggtca cttcctggtg ccattctgga ctttctttgg cgccaccctg 2281 atcggcaagg cggtgatcaa gatgcacatc cagaagatct ttgtgatcat cgcattcaac 2341 gagacgctaa tcgagcgagc cgtcgatctg ttggccacgc tgccagtgct tggccacaag 2401 ctgcaggagc cgttcaagtc cttcctgaaa aaccaaaagc agcgtctgca tcgccagcag 2461 cgaggagcgg ccggtgcgac aaccggagct ggagattcgg ggaatttgct gtcgcgcatc 2521 ttcgagacat tcgtgatcgg catggtgtgc tactttgtgg tgtccatcgt taactccttg 2581 gcccagagct accacaagag gcttcacaaa aagccggcga gcccagtagc tgcgaccacg 2641 cccactcgcc agtcgacggg ggcgagcaag aaggcgggca agcagaaagc tttacgggac 2701 tagaaaatca gtggatcagt cttctgttga tctttttccc caacccttgg ttttcgttta 2761 aattattttg tatattgcgg ctttcgctct tagtcaaatg atgtatctta tgtgagtgtg 2821 tcggcgagag aaaaggagac ggcgtggaag cctgaggaat ttaccatgta gactagacta 2881 gggaaaaaaa cagaaatgaa taagtaacgc gagtagcagc atcctatttt agaatgtaca 2941 acaaacaata ccttagcaat tttccgtgtg agttcgttta actaaagtaa cgaaagtgag 3001 ggagacgcag ctagtcgcga ctaatgaaaa gcaaattgtg caaaagacaa accagccaga 3061 gtaagcagag agcgctaaaa aagtaaaaga taaataaata attattataa taattataaa 3121 aggaaatatg tagacagaag c