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LOCUS NM_001272500 3173 bp mRNA linear INV 26-DEC-2023 mRNA. ACCESSION NM_001272500 VERSION NM_001272500.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3173) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3173) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3173) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3173) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3173) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3173) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3173) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3173) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3173) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3173) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3173) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3173) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3173) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3173) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3173) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3173) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3173) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3173) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3173) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3173) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3173) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3173) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3173) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3173 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3173 /gene="Rph" /locus_tag="Dmel_CG11556" /gene_synonym="CG11556; Dmel\CG11556; rph; Rph3A" /note="Rabphilin" /map="9E2-9E4" /db_xref="FLYBASE:FBgn0030230" /db_xref="GeneID:32002" CDS 1254..2459 /gene="Rph" /locus_tag="Dmel_CG11556" /gene_synonym="CG11556; Dmel\CG11556; rph; Rph3A" /note="CG11556 gene product from transcript CG11556-RD; CG11556-PD; Rph-PD; dm-rabphilin; rabphilin-3A" /codon_start=1 /product="rabphilin, isoform D" /protein_id="NP_001259429.1" /db_xref="FLYBASE:FBpp0304575" /db_xref="GeneID:32002" /db_xref="FLYBASE:FBgn0030230" /translation="MAKGIASTRLQREDSFRLRAYGSIRSFIDGGERKLSNSFFFNRQ QSQRPSECPEYDSVSMSKLRRESSFLRRGSVSSSWSISDSSGSGSNNSGNSQTQSQYQ QHQQQLQQHCRDPLLGWLEIAISYREAFHSLDCTMVRARDLPAMDAAGLADPYCKLNI ITPEAHTKYTRWQRTKTVHKTRNPEFNETLQFVGVEPEELGNSLIYVALFDDDKYGHD FLGAAKVCLSTVHSTSQYRISVPLGVEDQYSNAAEMAQNWPNGKMLLSLCYNTKRRAL VVNVKQCINLMAMDNNGSSDPFVKIQLKPDAHKNKKHKTSVKWRTLNPIYNEEFYFEA SPHDLNKEMLILTVWDKDLGKSNDFLGSLQLGAQSKGERLQQWLDCIRLPDHFHEKWH CLAPDNPAH" misc_feature 1602..1973 /gene="Rph" /locus_tag="Dmel_CG11556" /gene_synonym="CG11556; Dmel\CG11556; rph; Rph3A" /note="C2 domain first repeat present in Rabphilin and Double C2 domain; Region: C2A_Rabphilin_Doc2; cd04035" /db_xref="CDD:176000" misc_feature order(1692..1694,1710..1712,1884..1886,1890..1892, 1905..1907) /gene="Rph" /locus_tag="Dmel_CG11556" /gene_synonym="CG11556; Dmel\CG11556; rph; Rph3A" /note="Ca2+ binding site [ion binding]; other site" /db_xref="CDD:176000" misc_feature 2037..2435 /gene="Rph" /locus_tag="Dmel_CG11556" /gene_synonym="CG11556; Dmel\CG11556; rph; Rph3A" /note="C2 domain second repeat present in Rabphilin and Double C2 domain; Region: C2B_Rabphilin_Doc2; cd08384" /db_xref="CDD:176030" misc_feature order(2121..2123,2139..2141,2301..2303,2307..2309, 2325..2327) /gene="Rph" /locus_tag="Dmel_CG11556" /gene_synonym="CG11556; Dmel\CG11556; rph; Rph3A" /note="Ca2+ binding site [ion binding]; other site" /db_xref="CDD:176030" ORIGIN 1 agtcgcacac cagctgctca cgcattcgga cgtgttttcg catccgtttc gcaaccgatt 61 cgcaaacgct ccgcagctcg gcgccgacaa caacagttgg gccccattgc gaacaacaga 121 tacaagtggc cagcggactg gagtttcggc gggccggagt ctccatatcc gaatataatg 181 tgacaggacg acaagatgga cttccagaat cgcaacaata cggccaacaa gtttgtctgc 241 cccagcgaca ggcaactggc cctgcgtgcc aaattaaaag ctggctggag cagttccaag 301 accagtgagc cgctgcgtcc cgaggagcag gaggccatca tctcggtgat ccggcgcaac 361 gaggagattg aggtggccga gcggcaacgg gttggccgcc tggtggagcg cgtcgagaag 421 atcaagcagc atgccgtgga gcggggaccc aattgctgtc gcctgtgcgg cgacaccttc 481 ggtatcctgc ggccgcagcg catcctgtgc gaggactgcc gccagtcggt gtgcaccaag 541 tgcagcgtgg acattaacat ccgctaccac accagcgagc ggtcccgcga aatctggctg 601 tgtcgcatct gctccgagac gcgcgagatg tggaagaagt ccggagcgtg gttcttcaag 661 ggtctgccca agtacgatat gccgcgcagc gccagtgcca cgcccattcc caacccggga 721 cccggatcca tggcagctca aattcatcag tcgtcgatag atataatctt ttattcagag 781 caacaccact aattaccttc gagttatcaa cgactatcgc tattatcatc gtccgcccat 841 cgcaataatc ggtcttctat ctagtctatc gcttatcgaa aagatcgcag tctgtcaatc 901 ggaatctgat agccacagtc tgtcaggcgg tttccctaat gtttgatgat cagttttagg 961 tgcatttcga ttgctatcga taccgataca gcgcagtcat aatcggcaat caaatcaccg 1021 tacgactatc gctattatcg cacgaaacag agtatcggaa ttgcacatcg gcctattgta 1081 aaggcgacac gcgggccgtt caaagctgtc atgcgacgcc aacacgaccg gcgcgggtga 1141 agaagctaac gatccgggtg aacgacagca gctccagcag cagcgggcac tcggagccgg 1201 aggatgaggt ggacaccgga gtaggaatag gcgtcggcgt tgtcggtggt ggcatggcca 1261 agggcattgc ttccactcgt ttgcaacggg aggatagctt ccggctgagg gcatacggct 1321 ccatacgcag ctttatcgac ggcggcgagc ggaagttgtc caactccttc ttcttcaacc 1381 gccagcaaag tcaacggcca tcggagtgcc cggaatacga cagcgtcagc atgtcgaagc 1441 tgaggcggga gagcagcttc ctgcggcgcg gctccgtcag ctcctcctgg tcgattagcg 1501 atagttccgg ctccggatcg aacaactccg gcaactcaca aacgcagtcg cagtaccagc 1561 agcaccagca acagctacag cagcactgtc gcgatcccct gctcggctgg ctggagattg 1621 ccattagcta tcgtgaggcc ttccacagcc tcgactgcac catggtgcgt gcgcgggatc 1681 tgcccgccat ggatgcggcc ggattggcgg acccgtactg caagctcaac atcattacgc 1741 cggaggcgca caccaagtac acgcgatggc agcgcacaaa gacggtgcac aagacccgca 1801 atccggagtt caacgaaacg ctgcagttcg tcggcgtgga gcccgaggag ctgggtaact 1861 cgctgattta cgtggccctt ttcgacgacg acaagtacgg ccacgacttt ctcggcgcgg 1921 ccaaggtctg cctttccacg gtgcacagca cgtcgcagta ccggatttcg gtgccactcg 1981 gcgtggagga ccagtacagc aacgcggcgg agatggccca gaactggccc aatggcaaga 2041 tgcttctctc gctctgctac aacaccaagc gaagggcgtt ggtggtgaat gtgaaacagt 2101 gcatcaacct gatggccatg gacaacaacg gcagctccga tcccttcgtc aagatccaac 2161 tcaagccgga tgcgcacaag aacaagaagc acaagaccag cgtcaaatgg cgcacgctca 2221 atcccatcta caacgaggag ttctacttcg aggcaagtcc gcacgacctc aacaaggaga 2281 tgctcatcct gaccgtgtgg gacaaggatc tcggcaagag caacgacttc ctgggcagcc 2341 tgcaattggg cgcccaaagc aaaggcgaac gcctgcagca gtggctcgac tgcatccgat 2401 tgcccgatca cttccacgag aaatggcatt gcctcgcccc cgacaatccc gcccactgag 2461 tagccccatc cgatcccaac gccaaccgat ccccagtcca atcgattcga tcttatctct 2521 accgatatgg atgtttttcc tgtaggacac atttgaacga actgatttct cagcgcagtc 2581 aaggaaatat gaaccatatc ttttacgtta agtagttcag gaacatatta atgctaatgc 2641 ttttttcatt tctataactt ttttaacttt aaacagttaa taattgaata ctttgtaatt 2701 ttaaagatat aaactgcatg ctttgctaga tcgaatcaac actaattggt agctcaaagg 2761 acgatttgca ttagactaag ctgagaaatc aggtcgtgga aatgaggctt tagctccaaa 2821 tatacacata tatatatata cttacatata catacatata tattatatac atatattttt 2881 gataagcctg aatgggtgtg agcaagcaag aagaagctaa aaagagcgag aaatattgtg 2941 tgtttttgag tgaatgcttt ccaaaaatct cgtacgtaac cccaattttc tatgtctata 3001 ctttggctct tatcggcatt tttgtacact gtatatagct tgtttaagtg tccttaccaa 3061 gggttaacca acatcaaaat cttttcgatt cattgctaaa ttcaatcttt aatcaaacgt 3121 atacttatgt acttcaatat atcgaaatat atacatctat attctcaaaa gat