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LOCUS NM_001272499 3474 bp mRNA linear INV 26-DEC-2023 mRNA. ACCESSION NM_001272499 VERSION NM_001272499.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3474) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3474) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3474) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3474) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3474) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3474) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3474) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3474) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3474) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3474) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3474) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3474) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3474) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3474) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3474) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3474) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3474) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3474) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3474) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3474) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3474) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3474) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3474) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001272499.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3474 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3474 /gene="Rph" /locus_tag="Dmel_CG11556" /gene_synonym="CG11556; Dmel\CG11556; rph; Rph3A" /note="Rabphilin" /map="9E2-9E4" /db_xref="FLYBASE:FBgn0030230" /db_xref="GeneID:32002" CDS 1284..2846 /gene="Rph" /locus_tag="Dmel_CG11556" /gene_synonym="CG11556; Dmel\CG11556; rph; Rph3A" /note="CG11556 gene product from transcript CG11556-RC; CG11556-PC; Rph-PC; dm-rabphilin; rabphilin-3A" /codon_start=1 /product="rabphilin, isoform C" /protein_id="NP_001259428.1" /db_xref="FLYBASE:FBpp0304574" /db_xref="GeneID:32002" /db_xref="FLYBASE:FBgn0030230" /translation="MWKKSGAWFFKGLPKYDMPRSASATPIPNPGPGSMAGDTRAVQS CHATPTRPARVKKLTIRVNDSSSSSSGHSEPEDEVDTGVGIGVGVVGGGMAKGIASTR LQREDSFRLRAYGSIRSFIDGGERKLSNSFFFNRQQSQRPSECPEYDSVSMSKLRRES SFLRRGSVSSSWSISDSSGSGSNNSGNSQTQSQYQQHQQQLQQHCRDPLLGWLEIAIS YREAFHSLDCTMVRARDLPAMDAAGLADPYCKLNIITPEAHTKYTRWQRTKTVHKTRN PEFNETLQFVGVEPEELGNSLIYVALFDDDKYGHDFLGAAKVCLSTHVAVPDFGATRR GGPVQQRGGDGPELAQWQDASLALLQHQAKGVGGECETVHQPDGHGQQRQLRSLRQDP TQAGCAQEQEAQDQRQMAHAQSHLQRGVLLRGKSARPQQGDAHPDRVGQGSRQEQRLP GQPAIGRPKQRRTPAAVARLHPIARSLPREMALPRPRQSRPLSSPIRSQRQPIPSPID SILSLPIWMFFL" misc_feature <1284..1367 /gene="Rph" /locus_tag="Dmel_CG11556" /gene_synonym="CG11556; Dmel\CG11556; rph; Rph3A" /note="FYVE domain like superfamily; Region: FYVE_like_SF; cl28890" /db_xref="CDD:333710" misc_feature 1911..2246 /gene="Rph" /locus_tag="Dmel_CG11556" /gene_synonym="CG11556; Dmel\CG11556; rph; Rph3A" /note="C2 domain; Region: C2; cl14603" /db_xref="CDD:472691" ORIGIN 1 agtcgcacac cagctgctca cgcattcgga cgtgttttcg catccgtttc gcaaccgatt 61 cgcaaacgct ccgcagctcg gcgccgacaa caacagttgg gccccattgc gaacaacaga 121 tacaagtggc cagcggactg gagtttcggc gggccggagt ctccatatcc gaatataatg 181 tgacaggacg acaagatgga cttccagaat cgcaacaata cggccaacaa gtttgtctgc 241 cccagcgaca ggcaactggc cctgcgtgcc aactgagttc atggtcgaat ctcggatgaa 301 agcgcgtttg agctgaggcg ccttaactca agtcgcagga caagacagga caggatagga 361 ggacatcatc cctgttgctg tccgcaggac atgggttaat gtcactcaag tggctcgatc 421 gggcgaaact ttgagtgcct ggagtgcggc tccctgttta tttgcttact cggagaaaac 481 cttgtgccgc agaggcaaat gttgatagag cactaaccga atttgtaatt taattattat 541 gttaaggaac ctgcaagggc atttaagcca acgcccagcc catacgcccc aaaaaaaaag 601 aaggaaaaac gaactcaacc cacacacgaa ctgggcgagt aagcgcacat ggccacacaa 661 tcagatatat gtacatatat atatatgtat atgtatgttc tcatatatgc tccacgtaca 721 cgggaagtca ataaacccgg cgtgaaggca actcgcaccc acagtttctc gaaaacgaag 781 ccgaatcata acatgccaat ggaaacaatc aggaactatg caaatgagcc agctaagagt 841 ttttgttttt gccaattact atagcaatta tgatttcaat taagtccaaa agattacact 901 cttaagtcac ctggttaggt gtcgaaagat taaaagctgg ctggagcagt tccaagacca 961 gtgagccgct gcgtcccgag gagcaggagg ccatcatctc ggtgatccgg cgcaacgagg 1021 agattgaggt ggccgagcgg caacgggttg gccgcctggt ggagcgcgtc gagaagatca 1081 agcagcatgc cgtggagcgg ggacccaatt gctgtcgcct gtgcggcgac accttcggta 1141 tcctgcggcc gcagcgcatc ctgtgcgagg actgccgcca gtcggtgtgc accaagtgca 1201 gcgtggacat taacatccgc taccacacca gcgagcggtc ccgcgaaatc tggctgtgtc 1261 gcatctgctc cgagacgcgc gagatgtgga agaagtccgg agcgtggttc ttcaagggtc 1321 tgcccaagta cgatatgccg cgcagcgcca gtgccacgcc cattcccaac ccgggacccg 1381 gatccatggc aggcgacacg cgggccgttc aaagctgtca tgcgacgcca acacgaccgg 1441 cgcgggtgaa gaagctaacg atccgggtga acgacagcag ctccagcagc agcgggcact 1501 cggagccgga ggatgaggtg gacaccggag taggaatagg cgtcggcgtt gtcggtggtg 1561 gcatggccaa gggcattgct tccactcgtt tgcaacggga ggatagcttc cggctgaggg 1621 catacggctc catacgcagc tttatcgacg gcggcgagcg gaagttgtcc aactccttct 1681 tcttcaaccg ccagcaaagt caacggccat cggagtgccc ggaatacgac agcgtcagca 1741 tgtcgaagct gaggcgggag agcagcttcc tgcggcgcgg ctccgtcagc tcctcctggt 1801 cgattagcga tagttccggc tccggatcga acaactccgg caactcacaa acgcagtcgc 1861 agtaccagca gcaccagcaa cagctacagc agcactgtcg cgatcccctg ctcggctggc 1921 tggagattgc cattagctat cgtgaggcct tccacagcct cgactgcacc atggtgcgtg 1981 cgcgggatct gcccgccatg gatgcggccg gattggcgga cccgtactgc aagctcaaca 2041 tcattacgcc ggaggcgcac accaagtaca cgcgatggca gcgcacaaag acggtgcaca 2101 agacccgcaa tccggagttc aacgaaacgc tgcagttcgt cggcgtggag cccgaggagc 2161 tgggtaactc gctgatttac gtggcccttt tcgacgacga caagtacggc cacgactttc 2221 tcggcgcggc caaggtctgc ctttccacgc acgtcgcagt accggatttc ggtgccactc 2281 ggcgtggagg accagtacag caacgcggcg gagatggccc agaactggcc caatggcaag 2341 atgcttctct cgctctgcta caacaccaag cgaagggcgt tggtggtgaa tgtgaaacag 2401 tgcatcaacc tgatggccat ggacaacaac ggcagctccg atcccttcgt caagatccaa 2461 ctcaagccgg atgcgcacaa gaacaagaag cacaagacca gcgtcaaatg gcgcacgctc 2521 aatcccatct acaacgagga gttctacttc gaggcaagtc cgcacgacct caacaaggag 2581 atgctcatcc tgaccgtgtg ggacaaggat ctcggcaaga gcaacgactt cctgggcagc 2641 ctgcaattgg gcgcccaaag caaaggcgaa cgcctgcagc agtggctcga ctgcatccga 2701 ttgcccgatc acttccacga gaaatggcat tgcctcgccc ccgacaatcc cgcccactga 2761 gtagccccat ccgatcccaa cgccaaccga tccccagtcc aatcgattcg atcttatctc 2821 taccgatatg gatgtttttc ctgtaggaca catttgaacg aactgatttc tcagcgcagt 2881 caaggaaata tgaaccatat cttttacgtt aagtagttca ggaacatatt aatgctaatg 2941 cttttttcat ttctataact tttttaactt taaacagtta ataattgaat actttgtaat 3001 tttaaagata taaactgcat gctttgctag atcgaatcaa cactaattgg tagctcaaag 3061 gacgatttgc attagactaa gctgagaaat caggtcgtgg aaatgaggct ttagctccaa 3121 atatacacat atatatatat acttacatat acatacatat atattatata catatatttt 3181 tgataagcct gaatgggtgt gagcaagcaa gaagaagcta aaaagagcga gaaatattgt 3241 gtgtttttga gtgaatgctt tccaaaaatc tcgtacgtaa ccccaatttt ctatgtctat 3301 actttggctc ttatcggcat ttttgtacac tgtatatagc ttgtttaagt gtccttacca 3361 agggttaacc aacatcaaaa tcttttcgat tcattgctaa attcaatctt taatcaaacg 3421 tatacttatg tacttcaata tatcgaaata tatacatcta tattctcaaa agat