Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NM_001272491 2896 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_001272491 VERSION NM_001272491.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2896) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2896) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2896) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2896) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2896) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2896) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2896) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2896) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2896) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2896) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2896) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2896) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2896) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2896) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2896) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2896) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2896) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2896) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2896) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2896) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2896) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2896) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2896) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2896 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2896 /gene="spri" /locus_tag="Dmel_CG34414" /old_locus_tag="CG32680" /old_locus_tag="CG33175" /old_locus_tag="Dmel_CG32680" /old_locus_tag="Dmel_CG33175" /gene_synonym="anon-WO03040301.275; CG12638; CG15297; CG15298; CG15299; CG15300; CG15301; CG32674; CG32680; CG33175; CG34414; Dmel\CG34414; Rin1; Spri" /note="sprint" /map="9D2-9D3" /db_xref="FLYBASE:FBgn0085443" /db_xref="GeneID:31987" CDS 234..2147 /gene="spri" /locus_tag="Dmel_CG34414" /old_locus_tag="CG32680" /old_locus_tag="CG33175" /old_locus_tag="Dmel_CG32680" /old_locus_tag="Dmel_CG33175" /gene_synonym="anon-WO03040301.275; CG12638; CG15297; CG15298; CG15299; CG15300; CG15301; CG32674; CG32680; CG33175; CG34414; Dmel\CG34414; Rin1; Spri" /note="CG34414 gene product from transcript CG34414-RQ; CG34414-PQ; spri-PQ; sprint; sprint-b; sprint-a" /codon_start=1 /product="sprint, isoform Q" /protein_id="NP_001259420.1" /db_xref="FLYBASE:FBpp0307843" /db_xref="GeneID:31987" /db_xref="FLYBASE:FBgn0085443" /translation="MSWFRRSSRAPSVSRPHSPASLNQPHQNPTDQQHQRDMSKSLSW LDERCIERQEPEEFFHDPDHVRHYKEEAQFLSIMSEWEIIEHPPQSNYFSADFEEELL QQRTQLPISSLEDINHRDTTDMVKDKESKAEAKSKPKRKRKFLELLFVDNIQTGIALP QDENESPQRAPSSPTAVLCKKSRKSNSTNSIAIPSTIVATCPQQVLKDCRINRKQLKT EALASSIMGAIGKCPAGEDSMPGPLINEPDQCHPGHPRNKMSIQSSGPGDSLRAYTLQ LAQDPSSTFARNIENFICCTKESREAAPQVVMRNMRQFMSGMKNYLVKHGEGKFHAEL ETARARLKSDEFLNLDAMLETVMHQLVVLPLREHLYGIFVDHYQRSEDIQLLAQNVRY ACEREAADFGIRPTVTPPSQAALRLIANLLWRLQEAELPLDKLELFLCVISTVFDATG CPRGQQLGADDFLPVLVYVVAKCGFVGAEIEAEFMWGLLQPTLLNGEPGYYLTALCSA VQVLKTFMASEGESGSGSLDWRSSCLPACSSVLRVIIPDECNGSLQTRTLPVRPHTTT REVCRIIAHKARITNPQDYALFKLVDGEETLLTDAECPQDARLAAKGKHCMLAYKRID AKIAWPTAQLAGH" misc_feature 1485..1781 /gene="spri" /locus_tag="Dmel_CG34414" /old_locus_tag="CG32680" /old_locus_tag="CG33175" /old_locus_tag="Dmel_CG32680" /old_locus_tag="Dmel_CG33175" /gene_synonym="anon-WO03040301.275; CG12638; CG15297; CG15298; CG15299; CG15300; CG15301; CG32674; CG32680; CG33175; CG34414; Dmel\CG34414; Rin1; Spri" /note="Vacuolar sorting protein 9 (VPS9) domain; Region: VPS9; pfam02204" /db_xref="CDD:460489" misc_feature 1851..2105 /gene="spri" /locus_tag="Dmel_CG34414" /old_locus_tag="CG32680" /old_locus_tag="CG33175" /old_locus_tag="Dmel_CG32680" /old_locus_tag="Dmel_CG33175" /gene_synonym="anon-WO03040301.275; CG12638; CG15297; CG15298; CG15299; CG15300; CG15301; CG32674; CG32680; CG33175; CG34414; Dmel\CG34414; Rin1; Spri" /note="Ras-associating (RA) domain of Ras and Rab interactor (Rin) protein family; Region: RA_Rin; cd01776" /db_xref="CDD:340474" ORIGIN 1 aattagtttt gcattggccg cgtttagagc agcagcctgc gagagcgagc atcgaatcga 61 aacttatttc gttgagcaaa aaattctcga gacgaagatc caacgatcgt cggaggagag 121 tgagagttgg acgcgaccgc catcgcttat caattagccg cagcgtgtgc cgatgagaaa 181 cctgcgtttc cgccaattcg ttttagctgg caagaatcgc taccggatat accatgagtt 241 ggttcagaag atcgtcgcgt gcaccgtccg tgagccgccc gcattcaccc gcatcactca 301 accagccgca tcagaatccg acagatcagc agcatcagcg cgatatgtcc aagtcgctaa 361 gctggctgga tgagcgatgc attgaacggc aggagccgga ggagttcttt cacgatcctg 421 accatgtgcg acactacaag gaggaagcac agttcctgag catcatgtcc gaatgggaga 481 tcatcgagca tccgccgcag tccaattact tttcggcgga ctttgaagag gagctactgc 541 agcaacgaac acagctgcca atcagttcat tagaggatat caatcacagg gatactacgg 601 atatggttaa ggataaagag tcaaaggctg aagccaaatc gaaacctaaa cgcaaacgaa 661 aattcctgga actgctgttc gtggacaaca tacagactgg aattgccctg ccccaggacg 721 agaatgaaag cccacagcgg gctccatctt cgccaacagc ggtgctatgc aaaaagtcca 781 gaaagtccaa tagtaccaac agtattgcca tcccatccac cattgtggct acatgtccgc 841 aacaggtgct caaagactgc cgcatcaatc ggaaacaact gaagactgag gccctggcca 901 gctccattat gggtgccatc gggaaatgtc ccgccgggga ggattccatg ccggggccac 961 ttatcaacga gccggatcag tgccatcctg gtcacccccg caacaagatg agcattcaga 1021 gcagcggacc cggtgattct ttgagggcat acacccttca attggcccag gatcccagct 1081 cgacgtttgc ccgcaacatt gagaacttta tttgctgcac caaggagtcc cgggaggcgg 1141 cgccacaagt ggtgatgcga aatatgcgcc agttcatgag cggcatgaag aactatctgg 1201 tgaagcatgg cgagggcaag ttccatgcgg aactagagac ggcgagggcg cgactcaagt 1261 cggatgagtt cctcaacctg gacgccatgc tggagacggt gatgcaccag ttggtggtgc 1321 tgccgttgcg ggagcacctc tatggcattt tcgtcgatca ctatcagcgc agcgaggata 1381 tccaattgtt ggcgcaaaat gtacgctacg cctgcgaacg ggaggctgcc gactttggca 1441 tcaggcccac ggtaacgccg ccatcacagg ctgccctgcg gctcatcgct aatctgctgt 1501 ggcgcctcca ggaggccgaa ttgccgctcg acaagttgga gctcttcctg tgcgtcatct 1561 cgaccgtatt tgatgccacc ggctgtccgc gtggccagca gctgggcgcc gatgacttcc 1621 tgcccgtact ggtctatgtg gtggccaagt gcggatttgt gggcgccgag atcgaagcgg 1681 aattcatgtg gggcctcctc cagccgacac tgcttaatgg ggagccgggc tactacctga 1741 ccgccctctg cagcgctgtc caggtgctca agaccttcat ggcgtccgag ggggaaagcg 1801 gcagcggatc cctggactgg cgctccagct gccttccagc ctgctccagc gtgctgcgcg 1861 tgatcatacc ggacgagtgc aacggatccc tacaaacgag gacacttccg gtgcgaccac 1921 acaccaccac ccgtgaagtg tgccgcatca ttgcgcacaa ggcgcgcatc acaaatccgc 1981 aggactatgc gctctttaag ctggtcgatg gcgaggagac gctgctgacg gacgcagagt 2041 gtccgcagga tgcccgattg gcggccaagg gaaagcattg catgctggcc tacaagcgga 2101 tcgatgccaa gatcgcctgg ccgaccgccc agctggcagg acactgaatc atcagctcgg 2161 ggatgcaccc gatgcaaata tacgacatac cgccccgccc gctctgccct tcttgctcac 2221 taaccaagca tatttgatta ataatttatt attattacat taaaatatac ttagtagcct 2281 gtaagtaaag ctaattaatg ctaattagaa aacatctaat gtgtactaaa catcagtatt 2341 gagttaagtg tgtttttttt tcctgaccca cgggtcaagc cccctttttt tttgctaata 2401 aatgtactat gcgaatacat atacacatat atacgatata taaactttta gcaagtagag 2461 ttgcaattac tgcacaaaga aagcgatgga gtcatctaaa cgaatctaca ctctaaacat 2521 atatgcaaac acgagcatgc catctggggg tataatccat ttggtgtgga tcgtgtgtgc 2581 caccctggag accaaaagca cagttcaaca atcacagcaa caatcaatta ttcattcaat 2641 caaacatttt aacgattatg cgtgcatcat catcatcaaa ctacacaaaa ggcatttagg 2701 tgtgaatggg tttcgtgttt ttttttttta agaatcaaaa ccatataata ttgaagtata 2761 aacaattaaa ttttaatatt tatgttcaac taaacactgc tatcaaccct tgagatatac 2821 ataaatacat aaatattttt tgtatacttt gtaaaatatg tgacacgtaa tccaaatagc 2881 aagcaaataa ataacc