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LOCUS NM_001272490 3089 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_001272490 VERSION NM_001272490.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3089) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3089) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3089) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3089) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3089) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3089) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3089) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3089) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3089) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3089) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3089) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3089) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3089) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3089) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3089) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3089) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3089) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3089) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3089) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3089) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3089) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3089) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3089) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3089 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3089 /gene="spri" /locus_tag="Dmel_CG34414" /old_locus_tag="CG32680" /old_locus_tag="CG33175" /old_locus_tag="Dmel_CG32680" /old_locus_tag="Dmel_CG33175" /gene_synonym="anon-WO03040301.275; CG12638; CG15297; CG15298; CG15299; CG15300; CG15301; CG32674; CG32680; CG33175; CG34414; Dmel\CG34414; Rin1; Spri" /note="sprint" /map="9D2-9D3" /db_xref="FLYBASE:FBgn0085443" /db_xref="GeneID:31987" CDS 1009..2340 /gene="spri" /locus_tag="Dmel_CG34414" /old_locus_tag="CG32680" /old_locus_tag="CG33175" /old_locus_tag="Dmel_CG32680" /old_locus_tag="Dmel_CG33175" /gene_synonym="anon-WO03040301.275; CG12638; CG15297; CG15298; CG15299; CG15300; CG15301; CG32674; CG32680; CG33175; CG34414; Dmel\CG34414; Rin1; Spri" /note="CG34414 gene product from transcript CG34414-RP; CG34414-PP; spri-PP; sprint; sprint-b; sprint-a" /codon_start=1 /product="sprint, isoform P" /protein_id="NP_001259419.1" /db_xref="FLYBASE:FBpp0307842" /db_xref="GeneID:31987" /db_xref="FLYBASE:FBgn0085443" /translation="MAHIVECQALGLCLQSQSRRLYRRYRRGCECADEDFCQSRGCCR ILRRLLRLLCELIAGHPRNKMSIQSSGPGDSLRAYTLQLAQDPSSTFARNIENFICCT KESREAAPQVVMRNMRQFMSGMKNYLVKHGEGKFHAELETARARLKSDEFLNLDAMLE TVMHQLVVLPLREHLYGIFVDHYQRSEDIQLLAQNVRYACEREAADFGIRPTVTPPSQ AALRLIANLLWRLQEAELPLDKLELFLCVISTVFDATGCPRGQQLGADDFLPVLVYVV AKCGFVGAEIEAEFMWGLLQPTLLNGEPGYYLTALCSAVQVLKTFMASEGESGSGSLD WRSSCLPACSSVLRVIIPDECNGSLQTRTLPVRPHTTTREVCRIIAHKARITNPQDYA LFKLVDGEETLLTDAECPQDARLAAKGKHCMLAYKRIDAKIAWPTAQLAGH" misc_feature 1678..1974 /gene="spri" /locus_tag="Dmel_CG34414" /old_locus_tag="CG32680" /old_locus_tag="CG33175" /old_locus_tag="Dmel_CG32680" /old_locus_tag="Dmel_CG33175" /gene_synonym="anon-WO03040301.275; CG12638; CG15297; CG15298; CG15299; CG15300; CG15301; CG32674; CG32680; CG33175; CG34414; Dmel\CG34414; Rin1; Spri" /note="Vacuolar sorting protein 9 (VPS9) domain; Region: VPS9; pfam02204" /db_xref="CDD:460489" misc_feature 2044..2298 /gene="spri" /locus_tag="Dmel_CG34414" /old_locus_tag="CG32680" /old_locus_tag="CG33175" /old_locus_tag="Dmel_CG32680" /old_locus_tag="Dmel_CG33175" /gene_synonym="anon-WO03040301.275; CG12638; CG15297; CG15298; CG15299; CG15300; CG15301; CG32674; CG32680; CG33175; CG34414; Dmel\CG34414; Rin1; Spri" /note="Ras-associating (RA) domain of Ras and Rab interactor (Rin) protein family; Region: RA_Rin; cd01776" /db_xref="CDD:340474" ORIGIN 1 aattagtttt gcattggccg cgtttagagc agcagcctgc gagagcgagc atcgaatcga 61 aacttatttc gttgagcaaa aaattctcga gacgaagatc caacgatcgt cggaggagag 121 tgagagttgg acgcgaccgc catcgcttat caattagccg cagcgtgtgc cgatgagaaa 181 cctgcgtttc cgccaattcg ttttagctgg caagaatcgc taccggatat accatgagtt 241 ggttcagaag atcgtcgcgt gcaccgtccg tgagccgccc gcattcaccc gcatcactca 301 accagccgca tcagaatccg acagatcagc agcatcagcg cgatatgtcc aagtcgctaa 361 gctggctgga tgagcgatgc attgaacggc aggagccgga ggagttcttt cacgatcctg 421 accatgtgcg acactacaag gaggaagcac agttcctgag catcatgtcc gaatgggaga 481 tcatcgagca tccgccgcag tccaattact tttcggcgga ctttgaagag gagctactgc 541 agcaacgaac acagctgcca atcagttcat tagaggatat caatcacagg gatactacgg 601 atatggttaa ggataaagag tcaaaggctg aagccaaatc gaaacctaaa cgcaaacgaa 661 aattcctgga actgctgttc gtggacaaca tacagactgg aattgccctg ccccaggacg 721 agaatgaaag cccacagcgg gctccatctt cgccaacagc ggtgctatgc aaaaagtcca 781 gaaagtccaa tagtaccaac agtattgcca tcccatccac cattgtggct acatgtccgc 841 aacaggtgct caaagactgc cgcatcaatc ggaaacaact gaagactgag gccctggcca 901 gctccattat gggtgccatc gggaaatgtc ccgccgggga ggattccatg ccggggccac 961 ttatcaacga gccggatcag tgccatcctg ggcaacattc tactgaacat ggcgcacatt 1021 gtcgaatgcc aagcactggg cctgtgcctt caatcccaga gtcgtcgtct ctatcgacgc 1081 tatcgacgtg gctgtgaatg tgccgacgag gacttttgcc agagccgtgg ttgctgtcgc 1141 atcctgcgtc gtttgctccg actgctgtgt gaattaatag ctggtcaccc ccgcaacaag 1201 atgagcattc agagcagcgg acccggtgat tctttgaggg catacaccct tcaattggcc 1261 caggatccca gctcgacgtt tgcccgcaac attgagaact ttatttgctg caccaaggag 1321 tcccgggagg cggcgccaca agtggtgatg cgaaatatgc gccagttcat gagcggcatg 1381 aagaactatc tggtgaagca tggcgagggc aagttccatg cggaactaga gacggcgagg 1441 gcgcgactca agtcggatga gttcctcaac ctggacgcca tgctggagac ggtgatgcac 1501 cagttggtgg tgctgccgtt gcgggagcac ctctatggca ttttcgtcga tcactatcag 1561 cgcagcgagg atatccaatt gttggcgcaa aatgtacgct acgcctgcga acgggaggct 1621 gccgactttg gcatcaggcc cacggtaacg ccgccatcac aggctgccct gcggctcatc 1681 gctaatctgc tgtggcgcct ccaggaggcc gaattgccgc tcgacaagtt ggagctcttc 1741 ctgtgcgtca tctcgaccgt atttgatgcc accggctgtc cgcgtggcca gcagctgggc 1801 gccgatgact tcctgcccgt actggtctat gtggtggcca agtgcggatt tgtgggcgcc 1861 gagatcgaag cggaattcat gtggggcctc ctccagccga cactgcttaa tggggagccg 1921 ggctactacc tgaccgccct ctgcagcgct gtccaggtgc tcaagacctt catggcgtcc 1981 gagggggaaa gcggcagcgg atccctggac tggcgctcca gctgccttcc agcctgctcc 2041 agcgtgctgc gcgtgatcat accggacgag tgcaacggat ccctacaaac gaggacactt 2101 ccggtgcgac cacacaccac cacccgtgaa gtgtgccgca tcattgcgca caaggcgcgc 2161 atcacaaatc cgcaggacta tgcgctcttt aagctggtcg atggcgagga gacgctgctg 2221 acggacgcag agtgtccgca ggatgcccga ttggcggcca agggaaagca ttgcatgctg 2281 gcctacaagc ggatcgatgc caagatcgcc tggccgaccg cccagctggc aggacactga 2341 atcatcagct cggggatgca cccgatgcaa atatacgaca taccgccccg cccgctctgc 2401 ccttcttgct cactaaccaa gcatatttga ttaataattt attattatta cattaaaata 2461 tacttagtag cctgtaagta aagctaatta atgctaatta gaaaacatct aatgtgtact 2521 aaacatcagt attgagttaa gtgtgttttt ttttcctgac ccacgggtca agcccccttt 2581 ttttttgcta ataaatgtac tatgcgaata catatacaca tatatacgat atataaactt 2641 ttagcaagta gagttgcaat tactgcacaa agaaagcgat ggagtcatct aaacgaatct 2701 acactctaaa catatatgca aacacgagca tgccatctgg gggtataatc catttggtgt 2761 ggatcgtgtg tgccaccctg gagaccaaaa gcacagttca acaatcacag caacaatcaa 2821 ttattcattc aatcaaacat tttaacgatt atgcgtgcat catcatcatc aaactacaca 2881 aaaggcattt aggtgtgaat gggtttcgtg tttttttttt ttaagaatca aaaccatata 2941 atattgaagt ataaacaatt aaattttaat atttatgttc aactaaacac tgctatcaac 3001 ccttgagata tacataaata cataaatatt ttttgtatac tttgtaaaat atgtgacacg 3061 taatccaaat agcaagcaaa taaataacc