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LOCUS NM_001272481 2473 bp mRNA linear INV 26-DEC-2023 2-related protein, transcript variant D (PPP4R2r), mRNA. ACCESSION NM_001272481 VERSION NM_001272481.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2473) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2473) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2473) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2473) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2473) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2473) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2473) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2473) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2473) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2473) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2473) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2473) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2473) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2473) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2473) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2473) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2473) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2473) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2473) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2473) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2473) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2473) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2473) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001272481.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2473 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2473 /gene="PPP4R2r" /locus_tag="Dmel_CG2890" /gene_synonym="BcDNA:LD29930; CG2890; Dmel\CG2890; PP4R; PP4r2; PP4R2; PP4R2r; Ppp4R2; PPP4R2; R2" /note="Protein phosphatase 4 regulatory subunit 2-related protein" /map="9D1-9D2" /db_xref="FLYBASE:FBgn0030208" /db_xref="GeneID:31979" CDS 469..2037 /gene="PPP4R2r" /locus_tag="Dmel_CG2890" /gene_synonym="BcDNA:LD29930; CG2890; Dmel\CG2890; PP4R; PP4r2; PP4R2; PP4R2r; Ppp4R2; PPP4R2; R2" /note="CG2890 gene product from transcript CG2890-RD; CG2890-PD; PPP4R2r-PD; PP4 regulatory subunit; protein phosphatase 4 regulatory subunit 2-related protein" /codon_start=1 /product="protein phosphatase 4 regulatory subunit 2-related protein, isoform D" /protein_id="NP_001259410.1" /db_xref="FLYBASE:FBpp0307839" /db_xref="GeneID:31979" /db_xref="FLYBASE:FBgn0030208" /translation="MKSSLLERLDLFNAAPFTVQRLCELLIDPRKQYSRIDKFMRALE KNILVVSTIDPGRKRTESENGDSLDSVVNGDLSMEVNIDIEMENNNGNADEGSSPGAG SAGCAQKASCPRSDDNDQPKAKKAKLEIDGEERSEASDETDTEVATRVKNEKDEKNDN DETDSPHEAAEIEEPDEEVDEADQETKTTKQPAYGSQKEGEQEESFPSSADDEAEDPM VSKSIEAEKELVAQEKKREEDKKVAIEPKEEIVKKEEVVESDKPDGKVAQLGDKAVVK KSTPPADGENQEPVKVKAENEKEEKKHAPIKTEKQDDIDSTETDDAPSAEKPAEEKIA SSESKPKTKSEDDPEAETKKSQPEKTETEAAEKSVSDEKQAAEPNAESENRNDLTTSK ATEAAQESVEKSPVEDASSPAVEDLAAATTPQSPLGAADSAAETPPAETGDDSQASPL VAAVTPPVLALNDQPMEDTPAEEEARVSPSATVEEVVMAESANAGAMATEEAAKDDPA AMEIDDTSQEVMMQ" misc_feature <469..1113 /gene="PPP4R2r" /locus_tag="Dmel_CG2890" /gene_synonym="BcDNA:LD29930; CG2890; Dmel\CG2890; PP4R; PP4r2; PP4R2; PP4R2r; Ppp4R2; PPP4R2; R2" /note="Region: PPP4R2; pfam09184" /db_xref="CDD:462710" misc_feature <835..>1713 /gene="PPP4R2r" /locus_tag="Dmel_CG2890" /gene_synonym="BcDNA:LD29930; CG2890; Dmel\CG2890; PP4R; PP4r2; PP4R2; PP4R2r; Ppp4R2; PPP4R2; R2" /note="MAEBL; Provisional; Region: PTZ00121" /db_xref="CDD:173412" misc_feature <1528..1950 /gene="PPP4R2r" /locus_tag="Dmel_CG2890" /gene_synonym="BcDNA:LD29930; CG2890; Dmel\CG2890; PP4R; PP4r2; PP4R2; PP4R2r; Ppp4R2; PPP4R2; R2" /note="DNA polymerase III subunit gamma/tau; Region: PRK12323; cl46901" /db_xref="CDD:481241" ORIGIN 1 cacatcactc tcaatattaa ttgataagca aaaaattgag caagttctcg cataaacttt 61 gcaatcggaa aagcgtagtt gtgataaaaa caagtagaat aacaaaaaca aaaaaacaac 121 aaacaaaaaa aactttcccc tccgctcagc gatcgcctaa atggtcacca tggaaaacag 181 cgacgagata atgcagatcc tagagcgctt tacggatctt aaacaaaagg agatcccaaa 241 ggagctggag gagtacctac agtatgtggc caagaccggc gacaccatct tcaagtggtc 301 cagcctgaag tacttgttcc gcgagaagct gctcagcgtg atcaagcact ttaatgagga 361 ttcgccgcgt ttggagggga tattaggaac agaaataacc gaagacgaac ttaactgctt 421 gcagagattc ccaactatcc gaatgtggac cctttcaact acgagaccat gaagtcctcg 481 ttgctggagc gcttggacct tttcaatgca gctcctttta ccgtgcagcg gttgtgcgag 541 ctactaatcg atcctcggaa gcagtactcg cgcatcgata agtttatgcg tgctttggaa 601 aagaatattt tagtggttag cacaatcgat cctggacgca agcgtaccga aagtgagaat 661 ggcgactcgc tggactcagt ggtcaacggg gacctctcca tggaggtgaa cattgacatt 721 gaaatggaga ataataacgg taacgccgat gagggctcat ctcccggcgc cggttcggca 781 ggttgtgccc agaaggcaag ctgcccgcgt tcggacgaca atgatcagcc caaggccaag 841 aaggcaaaac tggagatcga tggtgaagag cgttcggaag cgagcgatga aacggacaca 901 gaagtggcaa ccagggtcaa aaatgaaaag gatgagaaga atgacaacga tgagactgat 961 tcgccgcatg aggctgccga gatcgaggag cccgatgaag aggtggatga ggctgatcag 1021 gagaccaaga ccaccaagca gcctgcttac ggcagtcaga aggagggcga gcaggaggaa 1081 agtttcccat catctgccga tgacgaggcg gaggacccaa tggtgagcaa atccatagaa 1141 gctgagaaag aacttgttgc tcaggaaaag aagagggagg aggacaaaaa ggtggcaatc 1201 gagccaaaag aagagattgt aaagaaggaa gaggtcgtcg agtctgataa accggacgga 1261 aaggtggcac agttaggcga caaggcagtt gtcaagaaat ctacaccgcc tgccgatggg 1321 gaaaaccagg agcctgtcaa agtcaaggca gaaaacgaaa aggaggagaa aaaacatgca 1381 ccaattaaaa ctgaaaagca ggacgatatc gactctactg agactgacga tgccccatca 1441 gcagaaaaac ccgctgaaga aaagatagct tcctccgaat cgaaaccgaa gaccaaatct 1501 gaggacgatc cagaggccga gaccaagaag agccaaccgg aaaagactga aactgaggcg 1561 gccgagaagt cggtttcgga tgaaaagcag gctgccgagc cgaatgcaga aagcgagaat 1621 aggaacgact tgaccacttc caaagcgacc gaggcagccc aggagtcagt cgagaagtcg 1681 ccggttgagg atgcttctag tcctgctgtg gaagatctgg cagctgcaac cacaccgcaa 1741 tctcctttgg gcgctgccga ttccgctgct gagacgccgc ctgctgagac aggcgatgac 1801 tcgcaggctt cgcccttggt cgccgctgta actccgcctg tcttggccct caacgaccag 1861 cccatggagg atactccagc cgaggaggag gcacgcgtct cgccgtcggc caccgtcgag 1921 gaggtggtaa tggccgaaag cgccaatgcc ggcgcaatgg ccaccgaaga ggccgccaag 1981 gacgatccgg ccgccatgga gatcgatgac accagccagg aggtgatgat gcagtagatt 2041 gggcccattc aggagccgta aacaccttta tttaactact actccatata actagtattt 2101 taagacaaaa gccgcaaata atgtagatgt aatcctgccc tgctttccct tttatatccc 2161 aacagatccc aatactttcc aataaggcaa gcagtggtag ctcccccttc gtagccgtaa 2221 gtcgcagccc ggacacgatc caacactaga ctctgttggc ggttcggtgt ttcatgctct 2281 gtggcctccc cttttgtttt gtatttatgt tgtgctgtcc acccccttgc gaatgacaat 2341 tttgagtatc tcaaccccct cgccactgtt cccaaatttt tttaaataat ctagttttag 2401 acgctgtccg tggcacgaac ttcggcaagc tgtgagcgcg attaaacaca gaataaacac 2461 tactcgtaat aac