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LOCUS NM_001272467 3058 bp mRNA linear INV 26-DEC-2023 mRNA. ACCESSION NM_001272467 VERSION NM_001272467.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3058) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3058) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3058) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3058) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3058) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3058) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3058) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3058) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3058) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3058) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3058) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3058) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3058) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3058) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3058) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3058) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3058) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3058) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3058) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3058) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3058) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3058) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3058) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3058 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3058 /gene="Ypel" /locus_tag="Dmel_CG15309" /gene_synonym="BcDNA:GH10478; CG15309; Dmel\CG15309; dYPEL3; Ypel2" /note="Yippee-like" /map="9B3-9B4" /db_xref="FLYBASE:FBgn0030183" /db_xref="GeneID:31949" CDS 775..1119 /gene="Ypel" /locus_tag="Dmel_CG15309" /gene_synonym="BcDNA:GH10478; CG15309; Dmel\CG15309; dYPEL3; Ypel2" /note="CG15309 gene product from transcript CG15309-RE; CG15309-PE; Ypel-PE" /codon_start=1 /product="Yippee-like, isoform E" /protein_id="NP_001259396.1" /db_xref="FLYBASE:FBpp0305121" /db_xref="GeneID:31949" /db_xref="FLYBASE:FBgn0030183" /translation="MVKTFQAYLPSTNRTYSCVHCRAHLASHDELISKSFQGSQGPAY LFNSVVNVACGQTEERVLLTGLHAVADIYCECCKTPLGWKYEHAYESSQKYKEGKFII ELAHMIKENGWD" misc_feature 817..1089 /gene="Ypel" /locus_tag="Dmel_CG15309" /gene_synonym="BcDNA:GH10478; CG15309; Dmel\CG15309; dYPEL3; Ypel2" /note="C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains; Region: RLR_C_like; cl13152" /db_xref="CDD:472430" ORIGIN 1 ttggatctct ttgttgtctg cgtttcgagt gcatttccct tttgcaccca ctccctctct 61 ctctctcaat ctcttctctc ctgctcccgc cgcctctcct tcgtgcgctc tttgttctgc 121 ccgttcgctc cttttgcatt ttctttgttc aagccaacgg cgcaggcagc ggcgcagcgt 181 cgacgtcggc agcggcagcc gatttgcatt tggagattga gcagaaggcg gcgttgtgat 241 aaagaagtgt gtgcagcagg aggggcggat aaaggggtgt gaacagcggg ggacgggacc 301 caattataca ttaccttttc gcagagtaat ctcatgttta aaattggtaa cttgcattat 361 tctttggctg gaattcagat atagccgggg atcggaatcg ggattggaat cagaattgga 421 aacggaatta aaatcatata tattcggatc aaaaatcgcg cgaggcaagt gactttaaac 481 gcagaaatca ttgttcaatg acagcagtcg cggcagtttt taccgctgtt gctactgcat 541 ctgctgctgg tcacgcccct tccgaatccg cccccaaaga cgaccccatt gcctcggata 601 aagccaaagt gcacagttaa caaagcccca aagcaaccga aactgaaaga tttagttgtg 661 gtcctggtca caagaaagag gaccactttt aggacagaca atcgcaggag atttgcagtc 721 tataacgttc gcatatagag gcccaaaaga gtcaaggata tcatcaacgt cacgatggtg 781 aagacgtttc aggcctatct accgtccacg aatcggacat actcatgtgt tcactgccgc 841 gcccacctcg cctcccacga cgagctcata tcgaagtcgt ttcagggcag tcagggaccg 901 gcctatctgt tcaactcggt ggtgaacgtg gcctgtggcc agacggagga gcgtgtgctc 961 ctgaccggcc tccatgcggt ggcggacatc tactgcgagt gctgcaagac gccgctgggc 1021 tggaaatatg agcacgccta tgagtccagc caaaagtaca aggagggcaa gttcatcatt 1081 gagctggcgc acatgatcaa ggagaacggc tgggactgaa gggctgtccg tttggatggg 1141 ctgattaatc agaagcacac ccgtaacagg aacagcagca acagcggcgg cggcggcggc 1201 agcggcagga aaagcagcga gttcaccaca caaaaaacga aacacacacg cggcaaataa 1261 attgcagaca aagagtgttt acaaaatggc taaagtctgg aaaatgcgaa cagagaacac 1321 acagagaata aagaagagga caatgaaaat gcgagatcga gttttagggt atcacacaat 1381 atatatatgc tattatatag tgcataactc gtcgtatctt atagagcaaa acaaacaaat 1441 caattaaaca cacagatata ccgcacattc gatcgaaaaa cacacattac ataaaaagct 1501 tgattgggtt tttgggaagg atctctgcgc tggccgccat ctaggatttc cgcactttca 1561 tttcgattac cattacccac taataccact ttgttttcct tttaccattt tgcgttgcaa 1621 gtttattcaa ttgtgtgtac tttctgtgca aaattaattc gatgccttaa ttcgatgata 1681 tcaaatataa aactggcgaa agccacacgc aaaacagaac ttgcactgcc aatcaataag 1741 aaaaatgtta agcatccaaa aaaaataaaa aaaaaaaata cagcaacagc aagaaccatt 1801 tgaaacacat gcgaaatcaa aaatgcggaa aacaaattga taacactcac cgatatacac 1861 aaacataaca cactcaaaca tttattaacg tagtagatat atttaataaa attattaaaa 1921 ttaataattt aatgcaattt tgcttgaaac aaacaaaaac acacacgaaa aagcgatata 1981 aacttaaact acaaaatttg tcaatgtgca aacgtaaaga acaagcgaaa aataaaggcg 2041 gcaaggtgcg cgtcttcacc gccaggtggc gttcaggtga tatccgaatg acactaaaca 2101 ctcaaaaatg atgcaccggt gtgcggtgga aaaaggggtt gggaaatgaa agaaattata 2161 tgaaatacaa gcatatgaca tgcctaactt taataaatga atataaatat acactatata 2221 tatatataca tatatatata tatatgtata tttatctaag agagaaatgc gtatttatgt 2281 cgcaaaatat cgtacattaa tcaaatcgaa ggaaagcttg aagctaagca agaaaataaa 2341 tatatgtata gcggcggaaa aagaaaagag catattttta aagcgaaacg gattatgaaa 2401 tataaatatg caaaaaataa ctgccaagaa ctatttaagt taaatgatgt tctctaagta 2461 gttatattaa tgtatctgag gaatatattt tgtggtagca ttaaaactaa ctagattaaa 2521 acgagaaaca agaaaaccga atacaacaga attcaataaa aacaatttca gaaatcaaat 2581 ccctttcgaa aacgagtaac attgaaatcg ctaaaactta tttgtgtcct taatttcatc 2641 ttcttaagca attggccgta cttaagcccg atctatatat atgtatatat atatatatat 2701 agatatatat atatgtatat atatcattcc aacatataac ccagttttgt caaagctttg 2761 agctttgttc gaccatttag gcattgacta atgtactcca tgcatgtgat gcaccatgaa 2821 cgaaacacaa attttgaaaa cggttaactg atgttagtat ttacatacat acatgccact 2881 atacatactt gcataaatac ataaaacgag accaccttta cattaaaaaa aaaaacaaaa 2941 acaaaataca aaaacctaca aacatcaaaa cacatccaaa acagtcagcg acatgaaccg 3001 catgcagccg attaagatgt attaaaatct caattcaaga ttgcaataaa gcgcattt