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LOCUS NM_001272429 2708 bp mRNA linear INV 26-DEC-2023 B, mRNA. ACCESSION NM_001272429 VERSION NM_001272429.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2708) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2708) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2708) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2708) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2708) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2708) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2708) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2708) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2708) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2708) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2708) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2708) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2708) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2708) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2708) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2708) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2708) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2708) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2708) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2708) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2708) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2708) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2708) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001272429.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2708 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2708 /gene="Lim1" /locus_tag="Dmel_CG11354" /gene_synonym="BcDNA:GH04929; CG10760; CG11354; dlim-1; dlim1; dLim1; Dlim1; Dmel\CG11354; Lim; lim1; LIM1" /note="LIM homeobox 1" /map="8A5-8B2" /db_xref="FLYBASE:FBgn0026411" /db_xref="GeneID:31813" CDS 179..1222 /gene="Lim1" /locus_tag="Dmel_CG11354" /gene_synonym="BcDNA:GH04929; CG10760; CG11354; dlim-1; dlim1; dLim1; Dlim1; Dmel\CG11354; Lim; lim1; LIM1" /note="CG11354 gene product from transcript CG11354-RB; CG11354-PB; Lim1-PB; Lim kinase" /codon_start=1 /product="LIM homeobox 1, isoform B" /protein_id="NP_001259358.1" /db_xref="FLYBASE:FBpp0304121" /db_xref="GeneID:31813" /db_xref="FLYBASE:FBgn0026411" /translation="MGSASEDDDDDDPPHLRATALGLGVLGPNGPDSAGGPLGTSDIS VQSMSTDSKNTHDDSDQGSLDGDPDGRGDSQAENKSPDDANGSKRRGPRTTIKAKQLE VLKTAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRMKQITSMGRPPFFG GARKMRGFPMNLSPGGLDDGPGFPYFAADAKFEFGYGGPFHPHDGPYFPGHPGGPMPF NAPGGPMDHSGPIPMVNEFGLTPEATFLGQAGGPPMQLQSAVGPPPPPPPPSAEHLMA AAAAAAQQQAAQQQQQQQQQQQQQQQQNAQQAANQTQQQQQQNGPRTNSPEFMSSANF SEPQNMQNEGLVW" misc_feature 257..676 /gene="Lim1" /locus_tag="Dmel_CG11354" /gene_synonym="BcDNA:GH04929; CG10760; CG11354; dlim-1; dlim1; dLim1; Dlim1; Dmel\CG11354; Lim; lim1; LIM1" /note="Homeodomain-containing transcription factor [Transcription]; Region: COG5576" /db_xref="CDD:227863" misc_feature 446..616 /gene="Lim1" /locus_tag="Dmel_CG11354" /gene_synonym="BcDNA:GH04929; CG10760; CG11354; dlim-1; dlim1; dLim1; Dlim1; Dmel\CG11354; Lim; lim1; LIM1" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" ORIGIN 1 tcaaaagaca aatgaaacac aacagtttgt aaaaggaaac gtgtgactct tttttttttt 61 ttgtttttgc cgcttcgacg cgtcaattta ttgcttgtca tataaattaa actgtttgct 121 gtgtgataaa caacaacaat gaatggccgg gcagcggcgg cgtaactgag attcattaat 181 gggctcggcg agcgaagacg atgacgacga tgatccgccg catttgcggg ccacggcact 241 cggattgggc gtactggggc ccaacggacc cgactcagcg ggcggacctc tgggcacatc 301 ggatatatca gtacaaagca tgagcaccga tagcaaaaat acccatgacg attccgatca 361 gggctccttg gacggcgatc cggatggacg tggcgattcc caggcggaga acaaaagtcc 421 cgacgatgcc aacggatcga agcgacgcgg tccgcgcacc accatcaagg ccaaacagct 481 ggaggtgctc aagacggcct tcaatcagac gccgaagccg acacgccaca tcagggagca 541 actggccaag gagaccgggc tgcccatgcg agtcatacag gtgtggttcc agaataaacg 601 gtcgaaggag cgacgcatga aacaaatcac cagcatgggc cgcccgccct ttttcggtgg 661 cgcccggaaa atgaggggct tccccatgaa cctctcgccc ggcggactgg acgacggacc 721 cggctttccc tacttcgcgg cggacgccaa gttcgagttc ggctacggcg gaccctttca 781 cccgcacgac ggaccctact ttcccggaca tcccggcgga ccgatgccct tcaatgcgcc 841 aggtggcccc atggaccaca gcggacccat tccgatggtg aacgagttcg gactgacgcc 901 ggaggcgacg ttccttgggc aggcgggcgg tccgccaatg caactgcagt cggccgtcgg 961 accgccgcca ccgccgccgc cgccgagcgc cgagcacttg atggccgccg cagcggcagc 1021 ggcgcagcaa caggcggcgc aacagcagca gcagcagcag caacaacagc agcagcagca 1081 acagcagaat gcgcaacaag cggcgaatca gacgcagcag cagcagcaac aaaatggccc 1141 ccgcaccaat tcgccggagt tcatgagctc ggcgaatttc agcgaaccgc agaatatgca 1201 aaatgaaggg ctcgtttggt aatatacgaa acagttggca acgcggctgc tgctcttcgg 1261 cagagagcga gagcgagagc gagagagagc ggcgcgagtg gaagagtaaa tgagagggaa 1321 ggagagtcag atgtagtgcc gtctcgttct ggccaaaggc taagccccac cccctctgct 1381 acgttttgtt tttgttatac ttttattatt attattatta ttaaaactgt gctatttttt 1441 tgtatttcaa ttcggcgcca aaatatttgt aaattataaa acaaaaaaca caaaaaaaaa 1501 aacaaataga caaaggaaat ctctcttaaa tgtataaaaa tcaaataatg ggcgctgcac 1561 atagtaaaca atttttttta acaaacaaaa acataaaaaa cacaaaagaa aagctctaaa 1621 aaaattaaat taaacccaaa cactaaacgt cttgtctgta attaaaacaa aaatactatt 1681 tatgtgtatc agtgtataaa aacaaaatga aaaactgtag tcttaaaaaa aggatctgca 1741 taaagagatt tttttttttg taaattagca cattttattc gtatatctaa aatttgttta 1801 tttttgcctg cattttttga cgaaaaacgt tttttttttt ttatattatt acacgtaaca 1861 tatggatata tattataatc gttgtctaac aacataaacg taactaggca tgtactagct 1921 cctaagtcta cataaaccag atattatata tacaagagct acatacggca gcacacacgt 1981 acacggcaaa aaaaaagaaa agaaaaaaga aacacatagc aaactaaact aaactttttt 2041 tttttttttg tggtcttaga acttaagcga acgtaattta ttataaacaa atggataaaa 2101 aaaatgagac gaatgggagg aggaagcagc agaaatgcta aaactaaatg taaacctaga 2161 aaaggatgac acctaaacaa aattacacgt atatataaaa ggtatatgag cataaatata 2221 taaattttcc aattataatg atatagcagc gaaaaaaaac gagacaaaaa tcccccagct 2281 aacaattttg attattatta tgacgatgcg aattattatt attattgtaa aaagtattta 2341 gtgttagcat aatgagtaag tttattaaag aacagaaaca acaacaacca caaaacagac 2401 aactaaatcc ttatattcat caagcgatta aaaatgaaat gtgcaaacga aacggcagca 2461 aaagaaaagt aaagaaatat aataaaggct aaaaaggaat gtgaaaattg caaggaaagg 2521 cgcccgagaa attcacatag gaataagcgc gcggcaaagg aggaaaaatc aataataaat 2581 aaacacaaat tgttaacaaa acctaaaaca taaaaagcat gacgatgaag agcaacaaac 2641 aaaaaacgga aatgaaagaa acatttgatg agaaaaaaat atatataaaa taaaaaatta 2701 aacaaaac