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LOCUS NM_001272403 3006 bp mRNA linear INV 26-DEC-2023 mRNA. ACCESSION NM_001272403 VERSION NM_001272403.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3006) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3006) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3006) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3006) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3006) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3006) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3006) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3006) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3006) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3006) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3006) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3006) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3006) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3006) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3006) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3006) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3006) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3006) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3006) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3006) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3006) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3006) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3006) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3006 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3006 /gene="otu" /locus_tag="Dmel_CG12743" /gene_synonym="CG12743; Dmel\CG12743; DROOTUA; fs(1)231; fs(1)23l; fs(1)jA265; fs(1)M101; fs(1)otu; K; Otu; OTU" /note="ovarian tumor" /map="7F1-7F1" /db_xref="FLYBASE:FBgn0003023" /db_xref="GeneID:31789" CDS 75..2510 /gene="otu" /locus_tag="Dmel_CG12743" /gene_synonym="CG12743; Dmel\CG12743; DROOTUA; fs(1)231; fs(1)23l; fs(1)jA265; fs(1)M101; fs(1)otu; K; Otu; OTU" /note="CG12743 gene product from transcript CG12743-RD; CG12743-PD; otu-PD; ovarian tumour; ovarian tumor" /codon_start=1 /product="ovarian tumor, isoform D" /protein_id="NP_001259332.1" /db_xref="FLYBASE:FBpp0305351" /db_xref="GeneID:31789" /db_xref="FLYBASE:FBgn0003023" /translation="MDMQVQRPITSGSRQAPDPYDQYLESRGLYRKHTARDASSLFRV IAEQMYDTQMLHYEIRLECVRFMTLKRRIFEKEIPGDFDSYMQDMSKPKTYGTMTELR AMSCLYRRNVILYEPYNMGTSVVFNRRYAENFRVFFNNENHFDSVYDVEYIERAAICQ SIAFKLLYQKLFKLPDVSFAVEIMLHPHTFNWDRFNVEFDDKGYMVRIHCTDGRVFKL DLPGDTNCILENYKLCNFHSTNGNQSINARKGGRLEIKNQEERKASGSSGHEPNDLLP MCPNRLESCVRQLLDDGISPFPYKVAKSMDPYMYRNIEFDCWNDMRKEAKLYNVYIND YNFKVPYESLHPLPPDEYRPWSLPFRYHRQMPRLPLPKYAGKANKSSKWKKNKLFEMD QYFEHSKCDLMPYMPVDNCYQGVHIQDDEQRDHNDPEQNDQNPTTEQRDREEPQAQKQ HQRTKASRVQPQNSSSSQNQEVSGSAAPPPTQYMNYVPMIPSRPGHLPPPWPASPMAI AEEFPFPISGTPHPPPTEGCVYMPFGGYGPPPPGAVALSGPHPFMPLPSPPLNVTGIG EPRRSLHPNGEDLPVDMVTLRYFYNMGVDLHWRMSHHTPPDELGMFGYHQQNNTDQQA GRTVVIGATEDNLTAVESTPPPSPEVANATEQSPLEKSAYAKRNLNSVKVRGKRPEQL QDIKDSLGPAAFLPTPTPSPSSNGSQFSFYTTPSPHHHLITPPRLLQPPPPPPIFYHK AGPPQLGGAAQGQTPYAWGMPAPVVSPYEVINNYNMDPSAQPQQQQPATLQPAPLSVQ SQPAAVYAATRHH" misc_feature 135..521 /gene="otu" /locus_tag="Dmel_CG12743" /gene_synonym="CG12743; Dmel\CG12743; DROOTUA; fs(1)231; fs(1)23l; fs(1)jA265; fs(1)M101; fs(1)otu; K; Otu; OTU" /note="OTU (ovarian tumor) domain of bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 and similar proteins; Region: OTU_ALG13-like; cd22753" /db_xref="CDD:438590" misc_feature order(192..194,327..329,336..338,357..368,444..446, 450..452,486..488,498..506) /gene="otu" /locus_tag="Dmel_CG12743" /gene_synonym="CG12743; Dmel\CG12743; DROOTUA; fs(1)231; fs(1)23l; fs(1)jA265; fs(1)M101; fs(1)otu; K; Otu; OTU" /note="putative polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:438590" ORIGIN 1 tagttcgcgg gttctctgaa aggctagatc gcgccattcg cttcaattct tcgtgtaacg 61 gtgctagagt cgccatggac atgcaagtgc agcgccccat tacgtcaggc agccggcagg 121 ccccggatcc gtatgatcag tatctggaga gccgtggact ctaccgtaag cacacggccc 181 gggacgcctc cagtttgttc cgtgtgatcg ccgagcagat gtacgacacc cagatgctgc 241 actacgagat tcggctagag tgcgtccgct tcatgaccct aaaacgacgc atctttgaga 301 aggaaattcc tggcgatttc gatagctaca tgcaggacat gtccaagccc aagacatatg 361 gaaccatgac agaactacgc gctatgtcct gcctatatcg ccgcaatgtt atcctgtatg 421 agccctacaa catgggcacc agcgtcgttt ttaatcgtcg ctatgcggaa aacttccgtg 481 tcttcttcaa caatgagaat cactttgatt cggtttatga cgttgaatat atagaaagag 541 ccgccatttg tcaatcaatc gcctttaagt tgctgtacca gaagcttttc aaattgcctg 601 acgtatcctt tgctgtggag attatgttgc atccacacac cttcaattgg gatcgcttca 661 atgtggagtt cgatgacaag ggctatatgg ttcgcattca ttgcaccgat ggacgagttt 721 ttaagcttga tctgccaggg gacacaaact gcatactgga aaactataag ctgtgcaatt 781 tccatagcac caatggaaat cagagcatta atgctcgaaa gggaggccgg ctggagatta 841 aaaaccagga ggagcgaaag gcatccggca gcagtggcca cgaaccaaac gatctgttgc 901 ccatgtgtcc aaaccgattg gagtcctgtg tccgccagct gctagatgat ggtatctctc 961 cgtttcccta caaagtggcc aagtccatgg acccctatat gtatcgtaat atagaatttg 1021 attgctggaa cgatatgcgc aaggaggcca agctttataa tgtctacata aatgactata 1081 actttaaggt cccgtatgaa tcgctccatc ccctgccgcc agatgagtac cgcccatggt 1141 cgttgccatt ccgctatcat cgccagatgc ctcgcttgcc gttgcccaag tatgccggta 1201 aggccaacaa gtcttccaaa tggaagaaga acaagctgtt cgaaatggac cagtattttg 1261 agcacagcaa gtgtgatttg atgccctaca tgcccgtgga caattgctat cagggtgtgc 1321 acattcagga cgatgagcag cgggatcata atgatcctga acaaaatgac cagaacccga 1381 ctacggagca gcgggatcgt gaagaaccgc aggcacagaa gcaacaccag cgcacgaagg 1441 catcaagggt tcagccgcag aactcgagtt ccagccaaaa ccaggaggtt tcgggttcgg 1501 ctgccccgcc acccactcag tatatgaatt acgtgccaat gataccgagt cgtcctgggc 1561 atttaccgcc accttggcct gcatctccga tggctattgc cgaggagttt ccgttcccca 1621 tttcaggaac cccgcatcca ccgccaaccg aaggttgtgt atacatgcca ttcggtggtt 1681 atggtccacc accaccggga gctgttgctt tatcgggacc gcatccattt atgccgcttc 1741 cttctccacc gctaaatgtt accggaattg gcgagccacg tcgttctcta cacccaaacg 1801 gtgaagattt gcccgtggat atggtgactt tgagatactt ctacaacatg ggcgtggatt 1861 tgcattggcg catgtcgcac cacacgccgc ctgatgaact aggaatgttt ggataccatc 1921 agcagaacaa cactgatcaa caggcaggac ggactgtagt cattggcgcc acagaggaca 1981 atttgactgc cgtggagtca acaccaccac cttcgccaga ggtggcaaat gccacagagc 2041 agtcaccgct tgagaaaagt gcctacgcca agcgcaattt gaattcggtt aaggtgcgcg 2101 gcaaacgtcc ggagcagctg caagatatta aggattcgct ggggccagcg gcatttttgc 2161 ccactccaac gccatcgcca agctcgaatg gcagtcagtt tagtttctat actactccat 2221 cgccgcatca tcacctgata acaccgccga ggttgctcca accgccgcca ccgccaccga 2281 tattctacca caaggcggga ccaccacagc tagggggagc agctcaagga cagactccct 2341 acgcctgggg catgccagct ccggtggtgt ccccctatga ggtgatcaac aactataaca 2401 tggacccgtc ggctcagcca caacaacagc agccagccac cttgcaacca gctcccttat 2461 ctgtccaatc tcagccggca gctgtctatg ctgcaacgcg tcatcactaa acaaagaaag 2521 aaaaaaaaaa gggagcgggg gcaaaaaaca gatcacttga aagagagagg ccatacagat 2581 cgaaggcatt acattccatt gcaattaacg gcttttaaaa tttaatctca cttttaaatt 2641 tgtagttaac tttttatagg ccataagcgt tggcgctcta tcataaacca ttcagcttct 2701 gtacaacaat cgattgcata acctaacgca aatgtcaacc caacttcatt ttaaaaatgt 2761 aatttaacgt aattttatgc gaattttttt aaagttagcc gtcacgaaat caaagaacca 2821 cctatttata tgatttattt aaaacccttc taaccaaaaa tatctacata ctatctacta 2881 tatatataca tatatatata tatatatatt tatgtgctcg ctgttcggct agagactcac 2941 ctatgtaaag tgtaccatca aaaattaacc ataaataaaa caagattcaa ctgcagcgca 3001 agagac