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Drosophila melanogaster TATA box binding protein-related factor 2


LOCUS       NM_001272401            6840 bp    mRNA    linear   INV 26-DEC-2023
            (Trf2), transcript variant G, mRNA.
ACCESSION   NM_001272401
VERSION     NM_001272401.1
DBLINK      BioProject: PRJNA164
            BioSample: SAMN02803731
KEYWORDS    RefSeq.
SOURCE      Drosophila melanogaster (fruit fly)
  ORGANISM  Drosophila melanogaster
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
REFERENCE   1  (bases 1 to 6840)
  AUTHORS   Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St
            Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K.,
            Strelets,V., Russo,S.M. and Gelbart,W.M.
  CONSRTM   FlyBase Consortium
  TITLE     Gene Model Annotations for Drosophila melanogaster: Impact of
            High-Throughput Data
  JOURNAL   G3 (Bethesda) 5 (8), 1721-1736 (2015)
   PUBMED   26109357
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6840)
  AUTHORS   Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St
            Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B.,
            Russo,S.M. and Gelbart,W.M.
  CONSRTM   FlyBase Consortium
  TITLE     Gene Model Annotations for Drosophila melanogaster: The
            Rule-Benders
  JOURNAL   G3 (Bethesda) 5 (8), 1737-1749 (2015)
   PUBMED   26109356
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 6840)
  AUTHORS   Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I.,
            Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R.,
            Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G.,
            Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N.,
            Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A.,
            Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E.
  TITLE     The Release 6 reference sequence of the Drosophila melanogaster
            genome
  JOURNAL   Genome Res 25 (3), 445-458 (2015)
   PUBMED   25589440
REFERENCE   4  (bases 1 to 6840)
  AUTHORS   Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M.,
            Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F.,
            Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E.
  TITLE     Sequence finishing and mapping of Drosophila melanogaster
            heterochromatin
  JOURNAL   Science 316 (5831), 1625-1628 (2007)
   PUBMED   17569867
REFERENCE   5  (bases 1 to 6840)
  AUTHORS   Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
  TITLE     The Release 5.1 annotation of Drosophila melanogaster
            heterochromatin
  JOURNAL   Science 316 (5831), 1586-1591 (2007)
   PUBMED   17569856
  REMARK    Erratum:[Science. 2007 Sep 7;317(5843):1325]
REFERENCE   6  (bases 1 to 6840)
  AUTHORS   Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D.,
            Ashburner,M. and Anxolabehere,D.
  TITLE     Combined evidence annotation of transposable elements in genome
            sequences
  JOURNAL   PLoS Comput Biol 1 (2), 166-175 (2005)
   PUBMED   16110336
REFERENCE   7  (bases 1 to 6840)
  AUTHORS   Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A.,
            Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A.,
            Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W.,
            Celniker,S.E., Rubin,G.M. and Karpen,G.H.
  TITLE     Heterochromatic sequences in a Drosophila whole-genome shotgun
            assembly
  JOURNAL   Genome Biol 3 (12), RESEARCH0085 (2002)
   PUBMED   12537574
REFERENCE   8  (bases 1 to 6840)
  AUTHORS   Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J.,
            Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E.,
            Rubin,G.M., Ashburner,M. and Celniker,S.E.
  TITLE     The transposable elements of the Drosophila melanogaster
            euchromatin: a genomics perspective
  JOURNAL   Genome Biol 3 (12), RESEARCH0084 (2002)
   PUBMED   12537573
REFERENCE   9  (bases 1 to 6840)
  AUTHORS   Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S.,
            Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E.,
            Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L.,
            Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D.,
            Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J.,
            Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M.,
            Rubin,G.M. and Lewis,S.E.
  TITLE     Annotation of the Drosophila melanogaster euchromatic genome: a
            systematic review
  JOURNAL   Genome Biol 3 (12), RESEARCH0083 (2002)
   PUBMED   12537572
REFERENCE   10 (bases 1 to 6840)
  AUTHORS   Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W.,
            Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E.,
            Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M.,
            Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S.,
            Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M.,
            Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W.,
            Gibbs,R.A. and Rubin,G.M.
  TITLE     Finishing a whole-genome shotgun: release 3 of the Drosophila
            melanogaster euchromatic genome sequence
  JOURNAL   Genome Biol 3 (12), RESEARCH0079 (2002)
   PUBMED   12537568
REFERENCE   11 (bases 1 to 6840)
  AUTHORS   Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D.,
            Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F.,
            George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N.,
            Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X.,
            Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D.,
            Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L.,
            Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D.,
            Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M.,
            Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S.,
            Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P.,
            Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A.,
            Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B.,
            Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I.,
            Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S.,
            Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C.,
            Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S.,
            Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z.,
            Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J.,
            Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J.,
            Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z.,
            Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C.,
            Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A.,
            Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C.,
            McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C.,
            Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L.,
            Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K.,
            Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S.,
            Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K.,
            Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I.,
            Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C.,
            Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R.,
            Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A.,
            Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT,
            Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F.,
            Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H.,
            Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O.,
            Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C.
  TITLE     The genome sequence of Drosophila melanogaster
  JOURNAL   Science 287 (5461), 2185-2195 (2000)
   PUBMED   10731132
REFERENCE   12 (bases 1 to 6840)
  AUTHORS   Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R.,
            Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R.,
            Smith,E., Yu,C. and Rubin,G.
  CONSRTM   Berkeley Drosophila Genome Project
  TITLE     Drosophila melanogaster release 4 sequence
  JOURNAL   Unpublished
REFERENCE   13 (bases 1 to 6840)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   14 (bases 1 to 6840)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2023) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   15 (bases 1 to 6840)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   16 (bases 1 to 6840)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (20-APR-2020) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   17 (bases 1 to 6840)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (22-APR-2019) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   18 (bases 1 to 6840)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAY-2018) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   19 (bases 1 to 6840)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (07-DEC-2016) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   20 (bases 1 to 6840)
  AUTHORS   Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R.,
            Park,S., Svirskas,R. and Karpen,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
            Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne
            Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA
  REMARK    Direct Submission
REFERENCE   21 (bases 1 to 6840)
  AUTHORS   Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S.,
            Svirskas,R. and Rubin,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
            Lawrence Berkeley National Laboratory, One Cyclotron Road, MS
            64-121, Berkeley, CA 94720, USA
  REMARK    Direct Submission
REFERENCE   22 (bases 1 to 6840)
  AUTHORS   Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
  CONSRTM   Drosophila Heterochromatin Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project,
            Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron
            Road, Mailstop 64-121, Berkeley, CA 94720, USA
REFERENCE   23 (bases 1 to 6840)
  AUTHORS   Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive,
            Rockville, MD 20850, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by FlyBase. This
            record is derived from an annotated genomic sequence (NC_004354).
            
            ##Genome-Annotation-Data-START##
            Annotation Provider :: FlyBase
            Annotation Status   :: Full annotation
            Annotation Version  :: Release 6.54
            URL                 :: http://flybase.org
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6840
                     /organism="Drosophila melanogaster"
                     /mol_type="mRNA"
                     /db_xref="taxon:7227"
                     /chromosome="X"
                     /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2]
                     bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]"
     gene            1..6840
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="TATA box binding protein-related factor 2"
                     /map="7E7-7E9"
                     /db_xref="FLYBASE:FBgn0261793"
                     /db_xref="GeneID:31773"
     CDS             673..5820
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="CG18009 gene product from transcript CG18009-RG;
                     CG18009-PG; Trf2-PG; lethal (1) G0295; lethal (1) G0425;
                     TBP-related factor 2; lethal (1) G0039; TBP related factor
                     2; lethal (1) G0071; TATA box-binding protein related
                     factor 2; TBP-like factor"
                     /codon_start=1
                     /product="TATA box binding protein-related factor 2,
                     isoform G"
                     /protein_id="NP_001259330.1"
                     /db_xref="FLYBASE:FBpp0303138"
                     /db_xref="GeneID:31773"
                     /db_xref="FLYBASE:FBgn0261793"
                     /translation="MGSAVKKGDGSPTRILEEYQVARDLRNEDLFPEHPVEHPDEDSD
                     KENQSPNQSPNPRAIGDCEQGPDIGKDTLNPNEADQFSSEEVEKNEANSSCNESGGDA
                     RNSRDRLSSSHSEDEQLNQEYSTSSSGSTIGNREQGSDVGKDTSSRNEADQFSNEEVE
                     KNEANSSGNESYGDACNSSDRLSSSNSEDEQLHQEYSTSSRGRTREYAQSDLNPGYQD
                     LNIGNQDLNQVNREYQESNNEYQVSNQEYQHLNTEYQELNHGDQDSNDEYQELNHGNQ
                     DSNDEYQESNHGNQDSNDEYQELNHSNQDSNDEYQELNHGDQDSSDEYQDLNHVNQDS
                     NHEYQAWNHEYQDSNHEYQALNREYQYPESDEEEAARKRNIYTRLRSYACQVHLPRLG
                     ESEVDSDDRRHNPINQPFNQPINRPNQKSDSSLESSSPERQDSESESRQASDEESSSG
                     DSDYLIDPVTGWLSRRRETSTEREEKSDQSQQESSEEITDEQKEESDDVEQQSPAEHT
                     SSDRRDHSPDKQQNKRKSLGTGNSSYSKKPLLDGDKGDPRSHLSSLGSRRSLKRKWPF
                     DCTDSKKFKPNLQSEEDKSEEEKREDTESECSDEEDSDSSSFDTDSNSDSDSNLDLDS
                     DSDSHSDFESSSSSEESAQDPAPEGETDQDPAPEGEADQDPAPEGGVDQDPAPEGGVD
                     QDPAPEGEVDQDPAPEGESDQDLAPEGGVDQDPAPEFGTDQDPHPYYNDQDPAPYYDD
                     QDPASYYDDHICDSEEDYKPFIFSKERKFLKFVTNPLGDDKSSLDLSIQLYKVFGAYK
                     LEDVYSSIDEEGQPEQDLQLKQQQKHLKKYQKLQLVVFWHQEKFFSKEQLLLYEYLKL
                     LLQKFFPQEQQEKRLQQEKLLQQEKLLQQEKRLQQEKRLQQEKRLQQEKRLQQEKRLQ
                     QQKLLQQQKLLQQEKLLQQQKLLQQEKLLQQEKLLQQEKQLQQEKHLPQERQLQQDKV
                     FLQLRQLQQKKELEEQRERKRHLFEQQKQFVLEKLRQQKEQHRRQQNRVKRERKLRQK
                     KEKQRLEYERFLKEYREDCKRQLRLQREHYLIKIKQLEKASQRSLKGNRKHKLMQNDM
                     VSIPVANLNGGLKAASSGSGVGVVTSGGVVSSAVLANAPRVYLTPSSTFMTNRQMAGV
                     ASTGRMSGQVVGGSSGTASTAGTVRYFSQFSKMQTAGGPSLQRKLANGDTIVLATGSK
                     NMFLTSSENKANLPTVASNGNGLITAKMDLLEEEVMQSITVIDDDDEEKKEVAEDEEE
                     SSNNAKPIDLHQPIADNEHELDIVINNVVCSFSVGCHLKLREIALQGSNVEYRRENGM
                     VTMKLRHPYTTASIWSSGRITCTGATSESMAKVAARRYARCLGKLGFPTRFLNFRIVN
                     VLGTCSMPWAIKIVNFSERHRENASYEPELHPGVTYKMRDPDPKATLKIFSTGSVTVT
                     AASVNHVESAIQHIYPLVFDFRKQRSAEELQHLRQKQRLQAGGDPHELEKNVLADNKT
                     ASLDNIFVNTTAAHSKSSSNDQTSAPATILSSTVDSMPRLKQMVNYHQMMKQTQEERR
                     HIMFNGEKANPASTSSAAAAPSTSSSSSSSGDNICANARRRATECWATKLQNKRPRYN
                     DPGTTGTINAASSTASAATSSLASQATHLRNPLKTAALANARMLGAKVTTCTRNSIIV
                     QQPQRIQMQQQQQQLQPQQQQTSFSPSEFDVDDLIEEEENNELDMPF"
     misc_feature    <2602..2868
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="hypothetical E4 protein; Provisional; Region:
                     PHA03418"
                     /db_xref="CDD:177646"
     misc_feature    <3343..>3936
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="Family of unknown function (DUF5401); Region:
                     DUF5401; pfam17380"
                     /db_xref="CDD:375164"
     misc_feature    4519..5040
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="TBP-like factors (TLF; also called TLP, TRF, TRP),
                     which are found in most metazoans. TLFs and TBPs have
                     well-conserved core domains; however, they only share
                     about 60% similarity. TLFs, like TBPs, interact with TFIIA
                     and TFIIB, which are part of the...; Region: TLF; cd04517"
                     /db_xref="CDD:239953"
     misc_feature    order(4534..4539,4543..4545,4621..4626,4636..4638,
                     4642..4644,4663..4665,4669..4671,4681..4683,4687..4689,
                     4693..4695,4699..4701,4789..4791,4804..4806,4810..4812,
                     4897..4902,4915..4917,4954..4956,4960..4962,4966..4968,
                     4978..4980)
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="putative DNA interaction surface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239953"
     misc_feature    order(4579..4581,4600..4608,4612..4614,4624..4626,
                     4642..4644,4648..4650)
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="putative TFIIA interaction surface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:239953"
     misc_feature    order(4840..4845,4879..4893,4900..4902,4915..4917)
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="putative TFIIB interaction surface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:239953"
ORIGIN      
        1 gtgagtgcgc acacacacgc acgcacgcgc gcacgcagca attgtgttgg tgcaagtgac
       61 gtttcccatt tctttttgtt ttgcttcgtt tcgtttgctg attactattt acagaaaata
      121 acggcaagtt gcgacgcgaa ttaactgtga tcctttacta aaagatgcag attctttgaa
      181 aattcgtgaa taaaaaccaa gcgatcgaat tcaaagattc atccgcataa gttggtagta
      241 aatagcggtg atccttctca aatgcaacga gaaattgtaa ctgttaaaca gactgctaaa
      301 cggaacaact aaaaactaca agcaaattta accaggagaa aagaacggaa gactagacat
      361 aatcataaac atagtagata gaattagaga accagcaaac ccaacaacta gaacactaag
      421 aaaacattaa ttctaataca aaatcacaca taaaaaagta ttttttggcc ttaagtgcaa
      481 acatactcac atacaaacac atacatacac atccacatga acgaaacaat ggaaagaatg
      541 taatacaaca ccaaggaaga atcaccttta gccttatata caattaaata taattaagaa
      601 gctagcaaga aaacgcagag caagagtcct atcaagaaac ccaaaaagat aacaagaaat
      661 atttttttaa cgatgggcag tgccgtcaaa aagggggatg gttccccgac tcgaatactt
      721 gaagaatacc aagtagctag agacttaagg aacgaggatt tgtttccgga acatccggtt
      781 gaacatccgg acgaagattc ggataaggag aaccaatcgc cgaatcaatc ccccaatcca
      841 agagccatcg gtgattgtga gcaaggacct gacattggta aagatactct aaatcccaac
      901 gaagctgacc agttttcgag cgaagaagtt gagaagaacg aagccaacag cagctgtaac
      961 gagtcgggcg gggatgctcg caattctaga gatcgtttaa gttcctctca tagcgaggac
     1021 gaacagctta accaagaata ttcaacttca tcaagcggaa gcaccatcgg aaatcgtgag
     1081 caaggctctg acgttggtaa agatacttca agtcgcaacg aagctgacca gttttcgaac
     1141 gaagaagttg agaagaacga agccaacagc agcggtaacg agtcgtacgg ggatgcctgc
     1201 aattctagtg atcgcttaag ttcttctaat agcgaggacg aacagctgca ccaagaatat
     1261 tcaacttcat caagaggaag aacaagggaa tatgcacaat ctgacttgaa tcccgggtac
     1321 caggacttga atatcggtaa ccaggacttg aatcaagtta atcgcgagta ccaggagtct
     1381 aataacgagt accaggtttc aaaccaagag taccagcact tgaataccga gtaccaggag
     1441 ttgaatcacg gcgatcagga ctcaaatgac gagtaccagg agttgaatca cggcaaccag
     1501 gactcaaatg acgagtacca ggaatcaaat cacggcaacc aggactcaaa tgacgagtac
     1561 caggagttga atcacagcaa ccaggactca aatgacgagt accaggagtt gaatcacggc
     1621 gatcaggact caagtgacga gtaccaggat ttgaatcacg tcaaccaaga ctcaaatcac
     1681 gagtaccagg cttggaatca cgaataccag gactcaaatc acgagtatca ggccttgaat
     1741 cgagagtacc aatatcctga atctgatgag gaagaggccg ctagaaaaag aaacatatat
     1801 acccgtttac gatcctacgc ttgtcaggta catctccctc gtttaggaga atcagaagtt
     1861 gatagcgacg atcgtcgcca taacccaatc aatcagccat tcaatcagcc aatcaatagg
     1921 ccaaatcaaa aatcggattc atctttagag tcatcttcgc cggagagaca agactctgaa
     1981 agcgagtcgc gacaagcttc agatgaggaa tcgtcttctg gggactcgga ctacttaatc
     2041 gatccagtta ctgggtggct atcgcgccgg cgagaaactt ctaccgaacg cgaggaaaaa
     2101 agcgaccaaa gccaacagga gtcgtcagag gaaattacag acgaacagaa ggaagaaagc
     2161 gacgacgtcg aacaacagtc gccggctgaa catacttctt ctgatagacg cgatcattcg
     2221 ccagacaagc aacagaataa gcgaaaatcg ttaggcactg ggaattcttc gtattcgaag
     2281 aaaccattat tggacggtga caaaggagac ccacgttcac atttatcgtc tctgggaagt
     2341 cgcagatcct taaagcgtaa atggcctttt gattgtacag actctaagaa atttaaacca
     2401 aacttgcaga gtgaggaaga caaatctgag gaggaaaaac gtgaagatac ggaaagcgaa
     2461 tgctctgacg aagaagactc agatagttca agtttcgata cagattcaaa ttcagattca
     2521 gattcaaatt tagatttaga ttccgattcc gattcccatt ccgatttcga atcatcttca
     2581 agttctgagg aatctgccca ggatccagct cctgaaggcg aaaccgatca agatccagct
     2641 cctgaaggcg aagccgatca agatccagct cctgaaggcg gagtcgatca agatccagct
     2701 cctgaaggcg gagtcgatca agatccagct cctgaaggcg aagtcgatca agatccagct
     2761 cctgaaggcg aatccgatca agatctagct cctgaaggcg gagtcgatca agatccagct
     2821 cctgaattcg gaaccgatca agatccacat ccttattaca acgatcagga tccagctcct
     2881 tattacgacg atcaggatcc agcttcttat tacgacgatc acatttgtga ttctgaggag
     2941 gattataaac catttatctt ctcaaaggaa aggaagttct tgaaattcgt aacaaatcct
     3001 ttaggggatg ataaatctag tttggacctt agcatacagc tctataaggt atttggagct
     3061 tacaaactgg aagacgtata cagcagtatt gatgaggaag gccaaccaga acaggacctg
     3121 caactgaagc agcaacagaa acatttaaaa aaatatcaaa agttgcaact ggtggtattc
     3181 tggcaccagg agaaattctt ttcaaaggag caactgttgc tatatgagta tctgaaacta
     3241 cttttgcaga aattctttcc acaagagcaa caggagaaac ggttgcaaca ggagaaactt
     3301 ttgcaacagg agaaactctt gcaacaggag aaacggttgc aacaggagaa acggttgcaa
     3361 caggagaaac ggttgcaaca ggagaaacgg ttgcaacagg agaaacggtt gcaacagcag
     3421 aaactcttgc aacagcagaa actcttgcaa caggagaaac tcttgcaaca gcagaaactc
     3481 ttgcaacagg agaaactctt gcaacaggag aaactcttgc aacaggagaa acaattgcaa
     3541 caggagaaac acttgccaca ggagcgacag ttgcaacagg ataaagtctt cctacagcta
     3601 cgacagttgc aacagaagaa agaactggag gagcagcgag agcgaaagcg ccacctcttt
     3661 gagcaacaga aacagtttgt cctagaaaaa ttgcgccaac agaaggagca gcatcgtcgt
     3721 cagcaaaatc gcgtaaaacg cgaacgtaaa ttgcgccaga aaaaggagaa acagcgcttg
     3781 gaatacgaac gattcttgaa ggaatatagg gaggactgta aacgtcagtt gcgtttgcag
     3841 cgcgagcatt atctgatcaa gattaagcag ctggagaagg ccagtcagcg ctcgttgaag
     3901 gggaatcgaa agcacaagct gatgcaaaac gatatggtca gcataccggt ggccaatttg
     3961 aacggcggcc ttaaagcggc cagcagcggt tccggagttg gtgtagtgac ctccggcggc
     4021 gtcgtatcct cggcggtgct ggccaatgcc ccacgtgtat acctaacgcc ctcctccaca
     4081 ttcatgacca atcgccaaat ggcgggagtg gcgtccaccg gaagaatgag cggacaagtc
     4141 gtcggtggtt catctggcac agcctcaaca gccggtaccg ttcgctattt ttcgcaattc
     4201 agcaaaatgc aaacggccgg cggacccagt ttgcaaagga aacttgccaa cggggatacc
     4261 attgttctgg caaccggcag taaaaatatg ttccttacta gcagcgaaaa taaggctaat
     4321 ctgccgaccg tcgccagcaa tggcaatggt ctgatcacag ccaaaatgga tctattggag
     4381 gaggaggtca tgcagtcgat aactgtgatt gatgacgatg acgaggagaa aaaggaagtc
     4441 gctgaagacg aagaagagag cagcaataat gccaaaccca ttgaccttca ccagccaatt
     4501 gctgataatg agcacgagct ggacattgtg ataaacaatg tggtctgctc gtttagcgtc
     4561 ggctgtcacc tgaagctgcg cgaaattgcg ctgcagggat caaatgtgga gtaccgtcgc
     4621 gagaacggaa tggtgacaat gaagctccgc catccataca ccactgcctc gatttggtcg
     4681 tcggggagga ttacctgcac tggtgccact tccgagtcaa tggccaaggt cgctgcacgc
     4741 cgctatgcca gatgccttgg caagctggga tttcccactc gtttcctcaa ctttcgcatt
     4801 gtcaacgtac tgggcacctg cagcatgccg tgggccatca agatcgtcaa cttttcggag
     4861 cgccatcgcg agaacgccag ctacgagccc gagctgcatc ctggagtgac ttacaagatg
     4921 cgcgatcccg atccaaaggc caccctgaag atcttctcca ccggcagcgt aacagtcacc
     4981 gcggctagcg taaaccacgt tgaatcggct atccagcaca tatacccgct ggtctttgat
     5041 ttccgcaagc aacgttcggc ggaggagctg cagcatctgc gtcaaaagca gcgtctgcaa
     5101 gccggcggtg atccccacga actggagaaa aatgtcttgg ccgataacaa gactgcttcc
     5161 cttgataata tctttgttaa tacaacagcg gcgcactcta aatcatcgtc gaatgaccaa
     5221 acatcagcac ccgcgaccat cttgtccagc acagttgata gtatgcctcg tctgaaacag
     5281 atggtcaact atcaccagat gatgaagcaa acccaggaag agcgccgcca tataatgttt
     5341 aatggggaga aggccaatcc ggcctccacc tcatcggcgg cagcagctcc ctccacctcc
     5401 tcctcatcgt cctcatccgg ggataatatc tgtgccaatg cccgtcgccg ggccaccgaa
     5461 tgctgggcaa ccaagctgca gaataagcgt ccacgttaca atgatcccgg taccacgggc
     5521 acaattaacg ccgcatcgtc cacagcatca gccgccacat cttcgttagc ctcccaggcg
     5581 acacatctgc gtaatcctct caagacggcc gcgttggcca atgcacgtat gttaggcgcc
     5641 aaggtgacaa catgcacacg caacagcata atcgtgcagc agccgcaacg tatccaaatg
     5701 cagcagcagc agcaacagct gcaaccgcag cagcaacaga ccagcttctc gcccagcgaa
     5761 ttcgatgttg atgacttgat cgaggaggag gagaacaacg aattggatat gcccttctaa
     5821 gctagcgctg cccgtgccaa aaaaaaattt caactaaaat ggttcaaatc gatgatgaaa
     5881 cactacaaca ctaaacacgc cacactcaca aatagccacg agcttctttt cgaatttgtt
     5941 ggttattcgt tcaagtcatt tttcatcaca tttattttcg tgtgcttgcc gcatttaaac
     6001 taaactcgag aaagcctgga caccgaagcg aaaagcaccc acagcgaagc aacaacaaca
     6061 aacaacaaac aaaacaccgc agcaacaaca aaatcaagag ccaaatattt aaaatataag
     6121 atttacgttt aaactacttt gtaagttaag cgagcacacc agaaacaaac aagcagagat
     6181 agcgaataga tgatttcgat cccgaagtat cccagaaacc tcaataacat ctagatggta
     6241 agcaagggag cttaccacac ggtaaacata agtttagact taaagaaaat acgtatgcga
     6301 cagcgtttta cgtatataac cgaaatctgt ggatagcctg gatgagtcac catcaatcat
     6361 cgcaattgca atcaattgtg gtgaaagtaa gagaacacac atgtagaact aatcaccagg
     6421 acaggaagag gacgatacga gcaaggtgcc caggcggatc ggatctcgca gcttcctatc
     6481 ttattttaaa tttttttttg aagctgaact ccaattcagt tctggccaag caaactacaa
     6541 ttctcaagta aaaatccgtg gagaggaggt ggggccagag aaaagcccac taggatagtt
     6601 atcaattatc tgaagaacaa ctgattaatt tcttgtatat tcataggaaa ttttttttgt
     6661 tttcgctata agtcctacat aataaatgct atacataagt gctgcgtgtg ggcgcataac
     6721 aaacgaaacg aaatgcgttt gaatgcgatt ataatattaa tattattatg catatataca
     6781 acacacacaa atacctatat ctggtcactt ctaaccaatt ataaacaaaa ctggaaaagc