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Drosophila melanogaster TATA box binding protein-related factor 2


LOCUS       NM_001272400            7034 bp    mRNA    linear   INV 26-DEC-2023
            (Trf2), transcript variant I, mRNA.
ACCESSION   NM_001272400
VERSION     NM_001272400.1
DBLINK      BioProject: PRJNA164
            BioSample: SAMN02803731
KEYWORDS    RefSeq.
SOURCE      Drosophila melanogaster (fruit fly)
  ORGANISM  Drosophila melanogaster
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
REFERENCE   1  (bases 1 to 7034)
  AUTHORS   Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St
            Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K.,
            Strelets,V., Russo,S.M. and Gelbart,W.M.
  CONSRTM   FlyBase Consortium
  TITLE     Gene Model Annotations for Drosophila melanogaster: Impact of
            High-Throughput Data
  JOURNAL   G3 (Bethesda) 5 (8), 1721-1736 (2015)
   PUBMED   26109357
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7034)
  AUTHORS   Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St
            Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B.,
            Russo,S.M. and Gelbart,W.M.
  CONSRTM   FlyBase Consortium
  TITLE     Gene Model Annotations for Drosophila melanogaster: The
            Rule-Benders
  JOURNAL   G3 (Bethesda) 5 (8), 1737-1749 (2015)
   PUBMED   26109356
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 7034)
  AUTHORS   Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I.,
            Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R.,
            Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G.,
            Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N.,
            Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A.,
            Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E.
  TITLE     The Release 6 reference sequence of the Drosophila melanogaster
            genome
  JOURNAL   Genome Res 25 (3), 445-458 (2015)
   PUBMED   25589440
REFERENCE   4  (bases 1 to 7034)
  AUTHORS   Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M.,
            Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F.,
            Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E.
  TITLE     Sequence finishing and mapping of Drosophila melanogaster
            heterochromatin
  JOURNAL   Science 316 (5831), 1625-1628 (2007)
   PUBMED   17569867
REFERENCE   5  (bases 1 to 7034)
  AUTHORS   Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
  TITLE     The Release 5.1 annotation of Drosophila melanogaster
            heterochromatin
  JOURNAL   Science 316 (5831), 1586-1591 (2007)
   PUBMED   17569856
  REMARK    Erratum:[Science. 2007 Sep 7;317(5843):1325]
REFERENCE   6  (bases 1 to 7034)
  AUTHORS   Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D.,
            Ashburner,M. and Anxolabehere,D.
  TITLE     Combined evidence annotation of transposable elements in genome
            sequences
  JOURNAL   PLoS Comput Biol 1 (2), 166-175 (2005)
   PUBMED   16110336
REFERENCE   7  (bases 1 to 7034)
  AUTHORS   Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A.,
            Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A.,
            Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W.,
            Celniker,S.E., Rubin,G.M. and Karpen,G.H.
  TITLE     Heterochromatic sequences in a Drosophila whole-genome shotgun
            assembly
  JOURNAL   Genome Biol 3 (12), RESEARCH0085 (2002)
   PUBMED   12537574
REFERENCE   8  (bases 1 to 7034)
  AUTHORS   Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J.,
            Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E.,
            Rubin,G.M., Ashburner,M. and Celniker,S.E.
  TITLE     The transposable elements of the Drosophila melanogaster
            euchromatin: a genomics perspective
  JOURNAL   Genome Biol 3 (12), RESEARCH0084 (2002)
   PUBMED   12537573
REFERENCE   9  (bases 1 to 7034)
  AUTHORS   Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S.,
            Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E.,
            Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L.,
            Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D.,
            Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J.,
            Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M.,
            Rubin,G.M. and Lewis,S.E.
  TITLE     Annotation of the Drosophila melanogaster euchromatic genome: a
            systematic review
  JOURNAL   Genome Biol 3 (12), RESEARCH0083 (2002)
   PUBMED   12537572
REFERENCE   10 (bases 1 to 7034)
  AUTHORS   Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W.,
            Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E.,
            Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M.,
            Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S.,
            Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M.,
            Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W.,
            Gibbs,R.A. and Rubin,G.M.
  TITLE     Finishing a whole-genome shotgun: release 3 of the Drosophila
            melanogaster euchromatic genome sequence
  JOURNAL   Genome Biol 3 (12), RESEARCH0079 (2002)
   PUBMED   12537568
REFERENCE   11 (bases 1 to 7034)
  AUTHORS   Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D.,
            Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F.,
            George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N.,
            Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X.,
            Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D.,
            Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L.,
            Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D.,
            Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M.,
            Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S.,
            Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P.,
            Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A.,
            Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B.,
            Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I.,
            Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S.,
            Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C.,
            Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S.,
            Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z.,
            Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J.,
            Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J.,
            Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z.,
            Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C.,
            Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A.,
            Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C.,
            McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C.,
            Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L.,
            Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K.,
            Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S.,
            Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K.,
            Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I.,
            Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C.,
            Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R.,
            Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A.,
            Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT,
            Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F.,
            Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H.,
            Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O.,
            Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C.
  TITLE     The genome sequence of Drosophila melanogaster
  JOURNAL   Science 287 (5461), 2185-2195 (2000)
   PUBMED   10731132
REFERENCE   12 (bases 1 to 7034)
  AUTHORS   Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R.,
            Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R.,
            Smith,E., Yu,C. and Rubin,G.
  CONSRTM   Berkeley Drosophila Genome Project
  TITLE     Drosophila melanogaster release 4 sequence
  JOURNAL   Unpublished
REFERENCE   13 (bases 1 to 7034)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   14 (bases 1 to 7034)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2023) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   15 (bases 1 to 7034)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   16 (bases 1 to 7034)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (20-APR-2020) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   17 (bases 1 to 7034)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (22-APR-2019) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   18 (bases 1 to 7034)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAY-2018) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   19 (bases 1 to 7034)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (07-DEC-2016) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   20 (bases 1 to 7034)
  AUTHORS   Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R.,
            Park,S., Svirskas,R. and Karpen,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
            Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne
            Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA
  REMARK    Direct Submission
REFERENCE   21 (bases 1 to 7034)
  AUTHORS   Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S.,
            Svirskas,R. and Rubin,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
            Lawrence Berkeley National Laboratory, One Cyclotron Road, MS
            64-121, Berkeley, CA 94720, USA
  REMARK    Direct Submission
REFERENCE   22 (bases 1 to 7034)
  AUTHORS   Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
  CONSRTM   Drosophila Heterochromatin Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project,
            Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron
            Road, Mailstop 64-121, Berkeley, CA 94720, USA
REFERENCE   23 (bases 1 to 7034)
  AUTHORS   Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive,
            Rockville, MD 20850, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by FlyBase. This
            record is derived from an annotated genomic sequence (NC_004354).
            
            ##Genome-Annotation-Data-START##
            Annotation Provider :: FlyBase
            Annotation Status   :: Full annotation
            Annotation Version  :: Release 6.54
            URL                 :: http://flybase.org
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7034
                     /organism="Drosophila melanogaster"
                     /mol_type="mRNA"
                     /db_xref="taxon:7227"
                     /chromosome="X"
                     /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2]
                     bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]"
     gene            1..7034
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="TATA box binding protein-related factor 2"
                     /map="7E7-7E9"
                     /db_xref="FLYBASE:FBgn0261793"
                     /db_xref="GeneID:31773"
     CDS             936..6080
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="CG18009 gene product from transcript CG18009-RI;
                     CG18009-PI; Trf2-PI; lethal (1) G0295; lethal (1) G0425;
                     TBP-related factor 2; lethal (1) G0039; TBP related factor
                     2; lethal (1) G0071; TATA box-binding protein related
                     factor 2; TBP-like factor"
                     /codon_start=1
                     /product="TATA box binding protein-related factor 2,
                     isoform I"
                     /protein_id="NP_001259329.1"
                     /db_xref="FLYBASE:FBpp0305892"
                     /db_xref="GeneID:31773"
                     /db_xref="FLYBASE:FBgn0261793"
                     /translation="MGSAVKKGDGSPTRILEEYQVARDLRNEDLFPEHPVEHPDEDSD
                     KENQSPNQSPNPRAIGDCEQGPDIGKDTLNPNEADQFSSEEVEKNEANSSCNESGGDA
                     RNSRDRLSSSHSEDEQLNQEYSTSSSGSTIGNREQGSDVGKDTSSRNEADQFSNEEVE
                     KNEANSSGNESYGDACNSNRLSSSNSEDEQLHQEYSTSSRGRTREYAQSDLNPGYQDL
                     NIGNQDLNQVNREYQESNNEYQVSNQEYQHLNTEYQELNHGDQDSNDEYQELNHGNQD
                     SNDEYQESNHGNQDSNDEYQELNHSNQDSNDEYQELNHGDQDSSDEYQDLNHVNQDSN
                     HEYQAWNHEYQDSNHEYQALNREYQYPESDEEEAARKRNIYTRLRSYACQVHLPRLGE
                     SEVDSDDRRHNPINQPFNQPINRPNQKSDSSLESSSPERQDSESESRQASDEESSSGD
                     SDYLIDPVTGWLSRRRETSTEREEKSDQSQQESSEEITDEQKEESDDVEQQSPAEHTS
                     SDRRDHSPDKQQNKRKSLGTGNSSYSKKPLLDGDKGDPRSHLSSLGSRRSLKRKWPFD
                     CTDSKKFKPNLQSEEDKSEEEKREDTESECSDEEDSDSSSFDTDSNSDSDSNLDLDSD
                     SDSHSDFESSSSSEESAQDPAPEGETDQDPAPEGEADQDPAPEGGVDQDPAPEGGVDQ
                     DPAPEGEVDQDPAPEGESDQDLAPEGGVDQDPAPEFGTDQDPHPYYNDQDPAPYYDDQ
                     DPASYYDDHICDSEEDYKPFIFSKERKFLKFVTNPLGDDKSSLDLSIQLYKVFGAYKL
                     EDVYSSIDEEGQPEQDLQLKQQQKHLKKYQKLQLVVFWHQEKFFSKEQLLLYEYLKLL
                     LQKFFPQEQQEKRLQQEKLLQQEKLLQQEKRLQQEKRLQQEKRLQQEKRLQQEKRLQQ
                     QKLLQQQKLLQQEKLLQQQKLLQQEKLLQQEKLLQQEKQLQQEKHLPQERQLQQDKVF
                     LQLRQLQQKKELEEQRERKRHLFEQQKQFVLEKLRQQKEQHRRQQNRVKRERKLRQKK
                     EKQRLEYERFLKEYREDCKRQLRLQREHYLIKIKQLEKASQRSLKGNRKHKLMQNDMV
                     SIPVANLNGGLKAASSGSGVGVVTSGGVVSSAVLANAPRVYLTPSSTFMTNRQMAGVA
                     STGRMSGQVVGGSSGTASTAGTVRYFSQFSKMQTAGGPSLQRKLANGDTIVLATGSKN
                     MFLTSSENKANLPTVASNGNGLITAKMDLLEEEVMQSITVIDDDDEEKKEVAEDEEES
                     SNNAKPIDLHQPIADNEHELDIVINNVVCSFSVGCHLKLREIALQGSNVEYRRENGMV
                     TMKLRHPYTTASIWSSGRITCTGATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNV
                     LGTCSMPWAIKIVNFSERHRENASYEPELHPGVTYKMRDPDPKATLKIFSTGSVTVTA
                     ASVNHVESAIQHIYPLVFDFRKQRSAEELQHLRQKQRLQAGGDPHELEKNVLADNKTA
                     SLDNIFVNTTAAHSKSSSNDQTSAPATILSSTVDSMPRLKQMVNYHQMMKQTQEERRH
                     IMFNGEKANPASTSSAAAAPSTSSSSSSSGDNICANARRRATECWATKLQNKRPRYND
                     PGTTGTINAASSTASAATSSLASQATHLRNPLKTAALANARMLGAKVTTCTRNSIIVQ
                     QPQRIQMQQQQQQLQPQQQQTSFSPSEFDVDDLIEEEENNELDMPF"
     misc_feature    <1335..2042
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="MSCRAMM family adhesin clumping factor ClfA;
                     Region: MSCRAMM_ClfA; NF033609"
                     /db_xref="CDD:468110"
     misc_feature    <2862..3128
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="hypothetical E4 protein; Provisional; Region:
                     PHA03418"
                     /db_xref="CDD:177646"
     misc_feature    <3603..>4196
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="Family of unknown function (DUF5401); Region:
                     DUF5401; pfam17380"
                     /db_xref="CDD:375164"
     misc_feature    4779..5300
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="TBP-like factors (TLF; also called TLP, TRF, TRP),
                     which are found in most metazoans. TLFs and TBPs have
                     well-conserved core domains; however, they only share
                     about 60% similarity. TLFs, like TBPs, interact with TFIIA
                     and TFIIB, which are part of the...; Region: TLF; cd04517"
                     /db_xref="CDD:239953"
     misc_feature    order(4794..4799,4803..4805,4881..4886,4896..4898,
                     4902..4904,4923..4925,4929..4931,4941..4943,4947..4949,
                     4953..4955,4959..4961,5049..5051,5064..5066,5070..5072,
                     5157..5162,5175..5177,5214..5216,5220..5222,5226..5228,
                     5238..5240)
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="putative DNA interaction surface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239953"
     misc_feature    order(4839..4841,4860..4868,4872..4874,4884..4886,
                     4902..4904,4908..4910)
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="putative TFIIA interaction surface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:239953"
     misc_feature    order(5100..5105,5139..5153,5160..5162,5175..5177)
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="putative TFIIB interaction surface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:239953"
ORIGIN      
        1 gctcaaagtg aaacggccaa acgaagaaga cgtatcgtgt gtgctcagac ttgtgctctc
       61 aaaatttttg agttttaact aaaaaagatc acaagccaaa aaaaaaaaaa acaaagagaa
      121 acctaaagaa atatcaacca aaagtgtgca aaatccaaaa gattctacaa tccgaatcga
      181 aaacaaaaac ataagaacca caaaagcagc agcagaaaga gacacagaga gcagcgaaaa
      241 cttaactgcg aattcagcgg ctgaagcaaa gcagcggagc ccaagtgcaa gcgagacggc
      301 agcagagctc cgctgcaagg caacgggata gaaagagaga taaatagaga gacagcgcag
      361 cagcgatata gagtgagagc aggcgggaga gcgagtagcg gcagcgacag caacacagcc
      421 acaaaagaga tcgtgagagg gagggagagc tagacgacga cctactacac aaaaaaaggc
      481 tctgtggtcg cgattaccag cgtctacgac aagctagaaa acaaaaaaaa gaaaaaatca
      541 ttcaaataat taagactgct aaacggaaca actaaaaact acaagcaaat ttaaccagga
      601 gaaaagaacg gaagactaga cataatcata aacatagtag atagaattag agaaccagca
      661 aacccaacaa ctagaacact aagaaaacat taattctaat acaaaatcac acataaaaaa
      721 gtattttttg gccttaagtg caaacatact cacatacaaa cacatacata cacatccaca
      781 tgaacgaaac aatggaaaga atgtaataca acaccaagga agaatcacct ttagccttat
      841 atacaattaa atataattaa gaagctagca agaaaacgca gagcaagagt cctatcaaga
      901 aacccaaaaa gataacaaga aatatttttt taacgatggg cagtgccgtc aaaaaggggg
      961 atggttcccc gactcgaata cttgaagaat accaagtagc tagagactta aggaacgagg
     1021 atttgtttcc ggaacatccg gttgaacatc cggacgaaga ttcggataag gagaaccaat
     1081 cgccgaatca atcccccaat ccaagagcca tcggtgattg tgagcaagga cctgacattg
     1141 gtaaagatac tctaaatccc aacgaagctg accagttttc gagcgaagaa gttgagaaga
     1201 acgaagccaa cagcagctgt aacgagtcgg gcggggatgc tcgcaattct agagatcgtt
     1261 taagttcctc tcatagcgag gacgaacagc ttaaccaaga atattcaact tcatcaagcg
     1321 gaagcaccat cggaaatcgt gagcaaggct ctgacgttgg taaagatact tcaagtcgca
     1381 acgaagctga ccagttttcg aacgaagaag ttgagaagaa cgaagccaac agcagcggta
     1441 acgagtcgta cggggatgcc tgcaattcta atcgcttaag ttcttctaat agcgaggacg
     1501 aacagctgca ccaagaatat tcaacttcat caagaggaag aacaagggaa tatgcacaat
     1561 ctgacttgaa tcccgggtac caggacttga atatcggtaa ccaggacttg aatcaagtta
     1621 atcgcgagta ccaggagtct aataacgagt accaggtttc aaaccaagag taccagcact
     1681 tgaataccga gtaccaggag ttgaatcacg gcgatcagga ctcaaatgac gagtaccagg
     1741 agttgaatca cggcaaccag gactcaaatg acgagtacca ggaatcaaat cacggcaacc
     1801 aggactcaaa tgacgagtac caggagttga atcacagcaa ccaggactca aatgacgagt
     1861 accaggagtt gaatcacggc gatcaggact caagtgacga gtaccaggat ttgaatcacg
     1921 tcaaccaaga ctcaaatcac gagtaccagg cttggaatca cgaataccag gactcaaatc
     1981 acgagtatca ggccttgaat cgagagtacc aatatcctga atctgatgag gaagaggccg
     2041 ctagaaaaag aaacatatat acccgtttac gatcctacgc ttgtcaggta catctccctc
     2101 gtttaggaga atcagaagtt gatagcgacg atcgtcgcca taacccaatc aatcagccat
     2161 tcaatcagcc aatcaatagg ccaaatcaaa aatcggattc atctttagag tcatcttcgc
     2221 cggagagaca agactctgaa agcgagtcgc gacaagcttc agatgaggaa tcgtcttctg
     2281 gggactcgga ctacttaatc gatccagtta ctgggtggct atcgcgccgg cgagaaactt
     2341 ctaccgaacg cgaggaaaaa agcgaccaaa gccaacagga gtcgtcagag gaaattacag
     2401 acgaacagaa ggaagaaagc gacgacgtcg aacaacagtc gccggctgaa catacttctt
     2461 ctgatagacg cgatcattcg ccagacaagc aacagaataa gcgaaaatcg ttaggcactg
     2521 ggaattcttc gtattcgaag aaaccattat tggacggtga caaaggagac ccacgttcac
     2581 atttatcgtc tctgggaagt cgcagatcct taaagcgtaa atggcctttt gattgtacag
     2641 actctaagaa atttaaacca aacttgcaga gtgaggaaga caaatctgag gaggaaaaac
     2701 gtgaagatac ggaaagcgaa tgctctgacg aagaagactc agatagttca agtttcgata
     2761 cagattcaaa ttcagattca gattcaaatt tagatttaga ttccgattcc gattcccatt
     2821 ccgatttcga atcatcttca agttctgagg aatctgccca ggatccagct cctgaaggcg
     2881 aaaccgatca agatccagct cctgaaggcg aagccgatca agatccagct cctgaaggcg
     2941 gagtcgatca agatccagct cctgaaggcg gagtcgatca agatccagct cctgaaggcg
     3001 aagtcgatca agatccagct cctgaaggcg aatccgatca agatctagct cctgaaggcg
     3061 gagtcgatca agatccagct cctgaattcg gaaccgatca agatccacat ccttattaca
     3121 acgatcagga tccagctcct tattacgacg atcaggatcc agcttcttat tacgacgatc
     3181 acatttgtga ttctgaggag gattataaac catttatctt ctcaaaggaa aggaagttct
     3241 tgaaattcgt aacaaatcct ttaggggatg ataaatctag tttggacctt agcatacagc
     3301 tctataaggt atttggagct tacaaactgg aagacgtata cagcagtatt gatgaggaag
     3361 gccaaccaga acaggacctg caactgaagc agcaacagaa acatttaaaa aaatatcaaa
     3421 agttgcaact ggtggtattc tggcaccagg agaaattctt ttcaaaggag caactgttgc
     3481 tatatgagta tctgaaacta cttttgcaga aattctttcc acaagagcaa caggagaaac
     3541 ggttgcaaca ggagaaactt ttgcaacagg agaaactctt gcaacaggag aaacggttgc
     3601 aacaggagaa acggttgcaa caggagaaac ggttgcaaca ggagaaacgg ttgcaacagg
     3661 agaaacggtt gcaacagcag aaactcttgc aacagcagaa actcttgcaa caggagaaac
     3721 tcttgcaaca gcagaaactc ttgcaacagg agaaactctt gcaacaggag aaactcttgc
     3781 aacaggagaa acaattgcaa caggagaaac acttgccaca ggagcgacag ttgcaacagg
     3841 ataaagtctt cctacagcta cgacagttgc aacagaagaa agaactggag gagcagcgag
     3901 agcgaaagcg ccacctcttt gagcaacaga aacagtttgt cctagaaaaa ttgcgccaac
     3961 agaaggagca gcatcgtcgt cagcaaaatc gcgtaaaacg cgaacgtaaa ttgcgccaga
     4021 aaaaggagaa acagcgcttg gaatacgaac gattcttgaa ggaatatagg gaggactgta
     4081 aacgtcagtt gcgtttgcag cgcgagcatt atctgatcaa gattaagcag ctggagaagg
     4141 ccagtcagcg ctcgttgaag gggaatcgaa agcacaagct gatgcaaaac gatatggtca
     4201 gcataccggt ggccaatttg aacggcggcc ttaaagcggc cagcagcggt tccggagttg
     4261 gtgtagtgac ctccggcggc gtcgtatcct cggcggtgct ggccaatgcc ccacgtgtat
     4321 acctaacgcc ctcctccaca ttcatgacca atcgccaaat ggcgggagtg gcgtccaccg
     4381 gaagaatgag cggacaagtc gtcggtggtt catctggcac agcctcaaca gccggtaccg
     4441 ttcgctattt ttcgcaattc agcaaaatgc aaacggccgg cggacccagt ttgcaaagga
     4501 aacttgccaa cggggatacc attgttctgg caaccggcag taaaaatatg ttccttacta
     4561 gcagcgaaaa taaggctaat ctgccgaccg tcgccagcaa tggcaatggt ctgatcacag
     4621 ccaaaatgga tctattggag gaggaggtca tgcagtcgat aactgtgatt gatgacgatg
     4681 acgaggagaa aaaggaagtc gctgaagacg aagaagagag cagcaataat gccaaaccca
     4741 ttgaccttca ccagccaatt gctgataatg agcacgagct ggacattgtg ataaacaatg
     4801 tggtctgctc gtttagcgtc ggctgtcacc tgaagctgcg cgaaattgcg ctgcagggat
     4861 caaatgtgga gtaccgtcgc gagaacggaa tggtgacaat gaagctccgc catccataca
     4921 ccactgcctc gatttggtcg tcggggagga ttacctgcac tggtgccact tccgagtcaa
     4981 tggccaaggt cgctgcacgc cgctatgcca gatgccttgg caagctggga tttcccactc
     5041 gtttcctcaa ctttcgcatt gtcaacgtac tgggcacctg cagcatgccg tgggccatca
     5101 agatcgtcaa cttttcggag cgccatcgcg agaacgccag ctacgagccc gagctgcatc
     5161 ctggagtgac ttacaagatg cgcgatcccg atccaaaggc caccctgaag atcttctcca
     5221 ccggcagcgt aacagtcacc gcggctagcg taaaccacgt tgaatcggct atccagcaca
     5281 tatacccgct ggtctttgat ttccgcaagc aacgttcggc ggaggagctg cagcatctgc
     5341 gtcaaaagca gcgtctgcaa gccggcggtg atccccacga actggagaaa aatgtcttgg
     5401 ccgataacaa gactgcttcc cttgataata tctttgttaa tacaacagcg gcgcactcta
     5461 aatcatcgtc gaatgaccaa acatcagcac ccgcgaccat cttgtccagc acagttgata
     5521 gtatgcctcg tctgaaacag atggtcaact atcaccagat gatgaagcaa acccaggaag
     5581 agcgccgcca tataatgttt aatggggaga aggccaatcc ggcctccacc tcatcggcgg
     5641 cagcagctcc ctccacctcc tcctcatcgt cctcatccgg ggataatatc tgtgccaatg
     5701 cccgtcgccg ggccaccgaa tgctgggcaa ccaagctgca gaataagcgt ccacgttaca
     5761 atgatcccgg taccacgggc acaattaacg ccgcatcgtc cacagcatca gccgccacat
     5821 cttcgttagc ctcccaggcg acacatctgc gtaatcctct caagacggcc gcgttggcca
     5881 atgcacgtat gttaggcgcc aaggtgacaa catgcacacg caacagcata atcgtgcagc
     5941 agccgcaacg tatccaaatg cagcagcagc agcaacagct gcaaccgcag cagcaacaga
     6001 ccagcttctc gcccagcgaa ttcgatgttg atgacttgat cgaggaggag gagaacaacg
     6061 aattggatat gcccttctaa gctagcgctg cccgtgccaa aaaaaaattt caactaaaat
     6121 ggttcaaatc gatgatgaaa cactacaaca ctaaacacgc cacactcaca aatagccacg
     6181 agcttctttt cgaatttgtt ggttattcgt tcaagtcatt tttcatcaca tttattttcg
     6241 tgtgcttgcc gcatttaaac taaactcgag aaagcctgga caccgaagcg aaaagcaccc
     6301 acagcgaagc aacaacaaca aacaacaaac aaaacaccgc agcaacaaca aaatcaagag
     6361 ccaaatattt aaaatataag atttacgttt aaactacttt gtaagttaag cgagcacacc
     6421 agaaacaaac aagcagagat agcgaataga tgatttcgat cccgaagtat cccagaaacc
     6481 tcaataacat ctagatgcgt tttacgtata taaccgaaat ctgtggatag cctggatgag
     6541 tcaccatcaa tcatcgcaat tgcaatcaat tgtggtgaaa gtaagagaac acacatgtag
     6601 aactaatcac caggacagga agaggacgat acgagcaagg tgcccaggcg gatcggatct
     6661 cgcagcttcc tatcttattt taaatttttt tttgaagctg aactccaatt cagttctggc
     6721 caagcaaact acaattctca agtaaaaatc cgtggagagg aggtggggcc agagaaaagc
     6781 ccactaggat agttatcaat tatctgaaga acaactgatt aatttcttgt atattcatag
     6841 gaaatttttt ttgttttcgc tataagtcct acataataaa tgctatacat aagtgctgcg
     6901 tgtgggcgca taacaaacga aacgaaatgc gtttgaatgc gattataata ttaatattat
     6961 tatgcatata tacaacacac acaaatacct atatctggtc acttctaacc aattataaac
     7021 aaaactggaa aagc