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Drosophila melanogaster Ubr3 ubiquitin ligase (Ubr3), transcript


LOCUS       NM_001272388            9371 bp    mRNA    linear   INV 26-DEC-2023
            variant B, mRNA.
ACCESSION   NM_001272388
VERSION     NM_001272388.1
DBLINK      BioProject: PRJNA164
            BioSample: SAMN02803731
KEYWORDS    RefSeq.
SOURCE      Drosophila melanogaster (fruit fly)
  ORGANISM  Drosophila melanogaster
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
REFERENCE   1  (bases 1 to 9371)
  AUTHORS   Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St
            Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K.,
            Strelets,V., Russo,S.M. and Gelbart,W.M.
  CONSRTM   FlyBase Consortium
  TITLE     Gene Model Annotations for Drosophila melanogaster: Impact of
            High-Throughput Data
  JOURNAL   G3 (Bethesda) 5 (8), 1721-1736 (2015)
   PUBMED   26109357
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9371)
  AUTHORS   Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St
            Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B.,
            Russo,S.M. and Gelbart,W.M.
  CONSRTM   FlyBase Consortium
  TITLE     Gene Model Annotations for Drosophila melanogaster: The
            Rule-Benders
  JOURNAL   G3 (Bethesda) 5 (8), 1737-1749 (2015)
   PUBMED   26109356
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 9371)
  AUTHORS   Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I.,
            Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R.,
            Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G.,
            Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N.,
            Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A.,
            Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E.
  TITLE     The Release 6 reference sequence of the Drosophila melanogaster
            genome
  JOURNAL   Genome Res 25 (3), 445-458 (2015)
   PUBMED   25589440
REFERENCE   4  (bases 1 to 9371)
  AUTHORS   Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M.,
            Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F.,
            Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E.
  TITLE     Sequence finishing and mapping of Drosophila melanogaster
            heterochromatin
  JOURNAL   Science 316 (5831), 1625-1628 (2007)
   PUBMED   17569867
REFERENCE   5  (bases 1 to 9371)
  AUTHORS   Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
  TITLE     The Release 5.1 annotation of Drosophila melanogaster
            heterochromatin
  JOURNAL   Science 316 (5831), 1586-1591 (2007)
   PUBMED   17569856
  REMARK    Erratum:[Science. 2007 Sep 7;317(5843):1325]
REFERENCE   6  (bases 1 to 9371)
  AUTHORS   Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D.,
            Ashburner,M. and Anxolabehere,D.
  TITLE     Combined evidence annotation of transposable elements in genome
            sequences
  JOURNAL   PLoS Comput Biol 1 (2), 166-175 (2005)
   PUBMED   16110336
REFERENCE   7  (bases 1 to 9371)
  AUTHORS   Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A.,
            Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A.,
            Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W.,
            Celniker,S.E., Rubin,G.M. and Karpen,G.H.
  TITLE     Heterochromatic sequences in a Drosophila whole-genome shotgun
            assembly
  JOURNAL   Genome Biol 3 (12), RESEARCH0085 (2002)
   PUBMED   12537574
REFERENCE   8  (bases 1 to 9371)
  AUTHORS   Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J.,
            Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E.,
            Rubin,G.M., Ashburner,M. and Celniker,S.E.
  TITLE     The transposable elements of the Drosophila melanogaster
            euchromatin: a genomics perspective
  JOURNAL   Genome Biol 3 (12), RESEARCH0084 (2002)
   PUBMED   12537573
REFERENCE   9  (bases 1 to 9371)
  AUTHORS   Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S.,
            Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E.,
            Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L.,
            Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D.,
            Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J.,
            Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M.,
            Rubin,G.M. and Lewis,S.E.
  TITLE     Annotation of the Drosophila melanogaster euchromatic genome: a
            systematic review
  JOURNAL   Genome Biol 3 (12), RESEARCH0083 (2002)
   PUBMED   12537572
REFERENCE   10 (bases 1 to 9371)
  AUTHORS   Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W.,
            Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E.,
            Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M.,
            Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S.,
            Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M.,
            Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W.,
            Gibbs,R.A. and Rubin,G.M.
  TITLE     Finishing a whole-genome shotgun: release 3 of the Drosophila
            melanogaster euchromatic genome sequence
  JOURNAL   Genome Biol 3 (12), RESEARCH0079 (2002)
   PUBMED   12537568
REFERENCE   11 (bases 1 to 9371)
  AUTHORS   Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D.,
            Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F.,
            George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N.,
            Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X.,
            Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D.,
            Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L.,
            Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D.,
            Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M.,
            Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S.,
            Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P.,
            Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A.,
            Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B.,
            Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I.,
            Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S.,
            Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C.,
            Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S.,
            Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z.,
            Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J.,
            Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J.,
            Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z.,
            Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C.,
            Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A.,
            Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C.,
            McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C.,
            Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L.,
            Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K.,
            Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S.,
            Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K.,
            Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I.,
            Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C.,
            Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R.,
            Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A.,
            Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT,
            Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F.,
            Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H.,
            Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O.,
            Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C.
  TITLE     The genome sequence of Drosophila melanogaster
  JOURNAL   Science 287 (5461), 2185-2195 (2000)
   PUBMED   10731132
REFERENCE   12 (bases 1 to 9371)
  AUTHORS   Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R.,
            Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R.,
            Smith,E., Yu,C. and Rubin,G.
  CONSRTM   Berkeley Drosophila Genome Project
  TITLE     Drosophila melanogaster release 4 sequence
  JOURNAL   Unpublished
REFERENCE   13 (bases 1 to 9371)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   14 (bases 1 to 9371)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2023) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   15 (bases 1 to 9371)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   16 (bases 1 to 9371)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (20-APR-2020) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   17 (bases 1 to 9371)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (22-APR-2019) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   18 (bases 1 to 9371)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAY-2018) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   19 (bases 1 to 9371)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (07-DEC-2016) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   20 (bases 1 to 9371)
  AUTHORS   Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R.,
            Park,S., Svirskas,R. and Karpen,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
            Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne
            Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA
  REMARK    Direct Submission
REFERENCE   21 (bases 1 to 9371)
  AUTHORS   Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S.,
            Svirskas,R. and Rubin,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
            Lawrence Berkeley National Laboratory, One Cyclotron Road, MS
            64-121, Berkeley, CA 94720, USA
  REMARK    Direct Submission
REFERENCE   22 (bases 1 to 9371)
  AUTHORS   Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
  CONSRTM   Drosophila Heterochromatin Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project,
            Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron
            Road, Mailstop 64-121, Berkeley, CA 94720, USA
REFERENCE   23 (bases 1 to 9371)
  AUTHORS   Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive,
            Rockville, MD 20850, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by FlyBase. This
            record is derived from an annotated genomic sequence (NC_004354).
            
            ##Genome-Annotation-Data-START##
            Annotation Provider :: FlyBase
            Annotation Status   :: Full annotation
            Annotation Version  :: Release 6.54
            URL                 :: http://flybase.org
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9371
                     /organism="Drosophila melanogaster"
                     /mol_type="mRNA"
                     /db_xref="taxon:7227"
                     /chromosome="X"
                     /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2]
                     bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]"
     gene            1..9371
                     /gene="Ubr3"
                     /locus_tag="Dmel_CG42593"
                     /old_locus_tag="Dmel_CG1530"
                     /old_locus_tag="Dmel_CG1531"
                     /gene_synonym="CG1530; CG1531; CG42593; Dmel\CG42593;
                     ubr3; UBR3"
                     /note="Ubr3 ubiquitin ligase"
                     /map="7C8-7D1"
                     /db_xref="FLYBASE:FBgn0260970"
                     /db_xref="GeneID:31713"
     CDS             1074..7784
                     /gene="Ubr3"
                     /locus_tag="Dmel_CG42593"
                     /old_locus_tag="Dmel_CG1530"
                     /old_locus_tag="Dmel_CG1531"
                     /gene_synonym="CG1530; CG1531; CG42593; Dmel\CG42593;
                     ubr3; UBR3"
                     /note="CG42593 gene product from transcript CG42593-RB;
                     CG42593-PB; Ubr3-PB"
                     /codon_start=1
                     /transl_except=(pos:7731..7733,aa:OTHER)
                     /product="Ubr3 ubiquitin ligase, isoform B"
                     /protein_id="NP_001259317.1"
                     /db_xref="FLYBASE:FBpp0303730"
                     /db_xref="GeneID:31713"
                     /db_xref="FLYBASE:FBgn0260970"
                     /translation="MDEDDNLSNADISIDDEEVVREQTHHPPMQEDQELDNEDGSSDV
                     DLSSVYVVPPIVSAPSPASVRIAGGSTIGGGGVAAGAVPTTTDNSHSPFHDWDSSVAA
                     AAAPPPPPPRTGPTTTTSSGTAAESGAASALSDDAGAKPSFFFGASSFSLRSRKEVAA
                     LINTECCRGSPTPDLDSIMDTLFNPGTPIDNLDNIEWIRWLIAGGRTPQEFVKIVRSY
                     DNHAKCGLVWVPHVVAYRCRTCGISPCMSICRDCFKKGNHTNHDFNMFLSQAGGACDC
                     GDTSVMKAEGFCSDHGINNRVNRDPVPNNLLAVAEAIMPKLLFRLLQHFREHSDTPLE
                     VQAITSYSCEEFANMLIDLNNMGEIMRKVMTRTLINPEVYAFFMEAPCQDTRNGRFLK
                     ANREKYEDAVNRFPNPEPPDEYRDLPALGDKLVHTTLLEEFIFWTFKFEFPQTLVCFL
                     LNMLPDQDYKEHLTRTFVMHYSRIPSVLEMSRDPDTLSNRVVHMSVQLFSNESLALKM
                     VNELSLLHVMIISLKLMMSKILIQNTLHDPNKNFHFVIDCTRQVMKDHCYWPLVSDFN
                     NVLSHESVALVFLRDDNLIDMWFQFLQMLQGMNVNVRETASHVEFEPNSYYAAFSCEL
                     EASAYPMWSIISHLQDGTHAHLAKKIINYCVTTLHEWLDSIYFMEARLSMEEMMQASF
                     HFPLHRYLAAFVCQAVTKMGISLNDVLPSRPYLLPLLMIHPLRVQSFFYEILAGKWVR
                     NGLQIKGQAMTYIQANFCNSMADMDLFFLQICATNLPQYFFLQNTIELFDVGQWLETA
                     PLKQPQKAEQSSMLEGFLTFLATLVTSRTNLGNDEATQCIIEISALLATENKTHSQLL
                     ELMPERSGNVHTKNFETFLKKLSVYKAPSSGSENLEQGLFTPIDEVWEKHYDPLHVLL
                     RAVHRRDFQSSLDRFTNYVKSKDKMPASGNLWPPFRLPHALPATSSFSDPCKILNSRI
                     FHSTILSIFFRAVHTRDVSEHLLALAVFLLEIAVETSDDVGSGTGDRAPPALAAVVES
                     SSGPGYHGYGTGRHEPPKLFHCYPTDNLSCNLRHVVKKVSLKSRDPQVITSSYRSNPF
                     YSDLDFEVEADPEQSMRMIGQGDPEGDEATGGAGLGMGAHSRRNVSQALVPMRVPGME
                     VALPPDLSVVAETGVVIRQDSNEDDLLREGNHAMDMSPPAALDFHFPLQQITLPESGM
                     EVAIRRDLLLAETNNMGAIAGGAGGGANASATPPAGASNEMFSPTTPTGSGMLLPFQR
                     VQPVAVPSSGNMDIVPSNAMGAGGSFTSGVSGSGTGRRMNYETGGARKRSVDIAIGGS
                     NKDELHLDESILSLLLKLHSQLSGTLDSFSLSDGEDQSSDDDSTMDVDCNEASTSMAA
                     AESTALAERGRSKRNYKNIHVSSSRIGDGPFFIGNLLRKIAKQDEQCAQSIDDIRARL
                     WPNQREKQAEAKAREAKEKEERRKKARERQQKMMQDFANKQKLFMQSAAASSSGMGYG
                     PEDEDDEELYEEQPREKEYDCIICNCTTPSTESNPIGLVVLVESSGIVGHRRRIAERL
                     PLPINAEDESRLAHTTRLAAEFNRRTELLSLKFGDESWYLSNNMAYDNGVHVQSCGHH
                     VHLSCLEAYLKTLYTTQRQPVQDRGEFYCPVCRQLSNSVLPLSPQLDRPTHLVRSGNQ
                     PFERLVADLTDLIKENETIPQPTKLTEAMGHAMEVMTNIAQRKVKCSSITFRKLFIFV
                     TSIARTNLEAEIIQRGGSLCTANATRYKPKRECIVPLLHVLSVHVRVLVEWPLWSSWA
                     SLAGLPVTATEPLPAHCLELIPSILADPIALLLKFILLAPLQLDQDYFTCMVKVMYNL
                     LYYQIVVQLCVTLTDLECDHIVKVYGSTSVGSDNSAAESQQQESAAGTTNNRRRAGQQ
                     QQSSSQLGKAMALVLSQTNDLVHLRRDCIPSTSSSAAASAAGSSSTTSTNHGASAATA
                     SSATTIEVNLKSMELQLQALCLPFLRVAALLRQHLYRHEMPEISAPGLEFVRLVYYLE
                     LVTDSMDWDCFNASKGLCFIPGTETTLPQFWCQQLMEVRPPADTVRELVLINQHSLWQ
                     QPRLLELPREYERLFTYYHERPCLNCYKVPKESSICLLCGTIVCLKQNCCAENDCCEA
                     VRHTLSCGGGIGIFLVVTSTYIIVIRGRRACLWGSLYLDDFDEEDRDLKRGKPLYLSK
                     DRFNLLESQWLSHKFAHTKHTWVFHRDLLXNMEDLLRSIQELVGQI"
     misc_feature    1743..1949
                     /gene="Ubr3"
                     /locus_tag="Dmel_CG42593"
                     /old_locus_tag="Dmel_CG1530"
                     /old_locus_tag="Dmel_CG1531"
                     /gene_synonym="CG1530; CG1531; CG42593; Dmel\CG42593;
                     ubr3; UBR3"
                     /note="UBR-box found in ubiquitin-protein ligase
                     E3-alpha-3 (UBR3) and similar proteins; Region:
                     UBR-box_UBR3; cd19673"
                     /db_xref="CDD:439071"
     misc_feature    order(1743..1745,1791..1793,1818..1820,1827..1829,
                     1845..1847,1893..1895,1899..1901,1935..1937)
                     /gene="Ubr3"
                     /locus_tag="Dmel_CG42593"
                     /gene_synonym="CG1530; CG1531; CG42593; Dmel\CG42593;
                     ubr3; UBR3"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:439071"
     misc_feature    <5301..5504
                     /gene="Ubr3"
                     /locus_tag="Dmel_CG42593"
                     /old_locus_tag="Dmel_CG1530"
                     /old_locus_tag="Dmel_CG1531"
                     /gene_synonym="CG1530; CG1531; CG42593; Dmel\CG42593;
                     ubr3; UBR3"
                     /note="Flagellar FliJ protein; Region: FliJ; pfam02050"
                     /db_xref="CDD:426581"
     misc_feature    5874..6026
                     /gene="Ubr3"
                     /locus_tag="Dmel_CG42593"
                     /old_locus_tag="Dmel_CG1530"
                     /old_locus_tag="Dmel_CG1531"
                     /gene_synonym="CG1530; CG1531; CG42593; Dmel\CG42593;
                     ubr3; UBR3"
                     /note="RING finger, H2 subclass, found in
                     ubiquitin-protein ligase E3-alpha-3 (UBR3) and similar
                     proteins; Region: RING-H2_UBR3; cd16483"
                     /db_xref="CDD:438146"
     misc_feature    6237..7679
                     /gene="Ubr3"
                     /locus_tag="Dmel_CG42593"
                     /old_locus_tag="Dmel_CG1530"
                     /old_locus_tag="Dmel_CG1531"
                     /gene_synonym="CG1530; CG1531; CG42593; Dmel\CG42593;
                     ubr3; UBR3"
                     /note="Proteolysis_6 C-terminal; Region: PRT6_C;
                     pfam18995"
                     /db_xref="CDD:465944"
ORIGIN      
        1 caggtgtaga gcggtcacac tggatgaaat tcaagaccta tcgatatcct gatatacacg
       61 ccaacgaaga ccgtgtgtgg attcgtggag caaatcgaag ttggcaggat taaaggcatt
      121 cgcgaacgca gaggcagcag ctaaagggcc acccatgcac caaagaaaca aactagctgg
      181 cccagcggtt catttatctg cgactaacaa gctaaaatcg gcgtaattgg caagttcaat
      241 gcacgactaa tatatttggc cacacttgcc agtgtatgtt tgttcgtgtg cgtgcctgtt
      301 tgtgtggtgt cgtctccgta cgtgtttgtg tgtgtgtccg cgacgagtat gtgtgcgcac
      361 atattcgtat atctgcaaga ctcgcggatg aaacagcgtg aaaagtgagc aaaatatcgg
      421 ggaaaaacgg cacggtacgg ccacagaacg gaacggtacg gtgcgatacg atatcgagaa
      481 aaggccatca gccagagtac tcctcgatcc ggaaacggat aatggggata tagatgatac
      541 agccaatagc tccccgaaag ccacagcaca caataggtcg gtcggtcggt cggttggttg
      601 ggcgacgtcg ccgagagtta aacatcaaaa atcaaaccca ggaaccgacg gagctaagtg
      661 tcaagtgttt ggtgttgtga aatttttcgt ttccagctct ccgttcagcg ttcagccaat
      721 ttgccaacct tttcccctct ttaatttgtt atccccggac accacaagag tttcgatcaa
      781 aattttcaat tgaacgcaac atcgccataa acaaaaacat aaaggtaaaa ttcggccact
      841 acccaaacaa caaaaaaata aaatcataag aaaaaatcac gcagtaacgt agaagaagca
      901 gcagccgaag ccgaaaaaag acgaaaagaa aacttgtttg aaaaggccga accgaaagaa
      961 gaaaaagagc agcagcagca gcacagcggc caagtttgga agaatttcag aatttcagcg
     1021 tgctaggaac ggagcagcgg accggcgacg tcaccaaata aacgcccatc accatggacg
     1081 aggatgacaa cctgtccaat gccgacataa gcatagatga cgaggaggtg gtgcgggagc
     1141 agacccacca tccgcccatg caagaggatc aggagctgga taacgaagat gggtcatccg
     1201 acgtggatct gtcttcggtg tacgtcgtgc cacccatagt ctcggcacca tcgcccgcat
     1261 cagtgcgcat cgctggtgga tccacaattg gtggcggagg ggtcgcagct ggagcagttc
     1321 caacaaccac cgataactcg cattccccct tccacgattg ggattccagt gtggcggccg
     1381 ctgctgctcc accgccgcca ccgcccagga caggaccaac tacaactaca agctccggca
     1441 cagccgcgga atcgggagcc gcgtccgcct tatccgacga tgccggcgcc aagccaagtt
     1501 tcttctttgg cgcctcctcg ttcagtttgc gcagccgcaa ggaggtggcc gccctgatca
     1561 acacggaatg ctgccgtggc agccccacac ccgatctcga ctccataatg gataccctat
     1621 tcaatccggg gacgcccatc gacaatctgg acaacatcga gtggatacga tggctcattg
     1681 ccggcggacg gacgccgcag gagtttgtta aaattgtgcg cagctatgac aaccacgcca
     1741 aatgcggtct ggtatgggta ccgcatgtgg tggcctacag gtgccgcact tgcggcatat
     1801 cgccctgcat gtccatatgc cgggactgct tcaagaaggg caaccacacg aaccacgact
     1861 tcaatatgtt cctgtcacag gcgggcggtg cctgcgattg tggtgacacc tcggtcatga
     1921 aggcggaggg tttttgcagt gatcatggca tcaataatcg ggtgaatcgc gatccggtgc
     1981 caaacaatct tttggcagtg gccgaggcca taatgcccaa gctgctcttc cgcctgctgc
     2041 agcacttccg tgagcacagc gacaccccac tggaggtgca agcgataacg tcgtactcct
     2101 gcgaggagtt cgccaacatg ctgatcgatc tgaacaacat gggcgaaata atgcgcaaag
     2161 tgatgacgcg cacgctgata aatccggagg tgtatgcctt cttcatggaa gcaccgtgcc
     2221 aggacacccg gaatggacgc ttcttgaagg cgaaccgaga gaagtacgag gatgccgtca
     2281 atagattccc aaacccagag ccacccgatg agtacagaga tctgcccgcg ctgggcgaca
     2341 aattggtcca caccacgcta ctcgaagagt tcatcttctg gacatttaag ttcgagtttc
     2401 cacagactct ggtctgcttt ctgctgaaca tgctgcctga tcaggattac aaggaacacc
     2461 tcacccgcac atttgtgatg cactacagcc gcataccgtc cgtgttggaa atgtcccgtg
     2521 atccggacac gctcagcaac cgggtggtcc acatgagcgt ccaactcttc tctaacgaaa
     2581 gtctggccct caagatggtc aacgagctgt cgctgctgca cgtaatgatt attagtctga
     2641 agctaatgat gtccaagata ctcatacaga atacattgca tgatcccaac aagaattttc
     2701 atttcgtcat cgactgcacg cgtcaggtga tgaaggacca ctgctactgg ccactagtct
     2761 cggactttaa caacgtcctt tcacacgaat cggtggccct ggtctttctg cgggacgaca
     2821 atctcatcga tatgtggttc cagtttctcc agatgctcca gggcatgaat gtcaatgtgc
     2881 gcgagacggc ttctcatgtg gaattcgagc caaatagcta ctatgcggcg ttctcctgtg
     2941 agcttgaggc cagtgcctat cccatgtggt cgattatctc gcatctgcag gatggcacac
     3001 atgcccatct ggcaaagaag atcatcaact actgtgtgac gacgctgcac gagtggctag
     3061 actctattta ctttatggag gcgcgtctat ctatggagga gatgatgcag gcttcgttcc
     3121 actttcccct gcatcgttat ctggctgcct ttgtttgcca ggcggtaact aaaatgggaa
     3181 tcagtctgaa cgatgtgctg ccctcacgcc cctatctgct gcccctgctg atgatccatc
     3241 cacttcgcgt ccagagtttt ttctacgaga tcctggccgg aaaatgggtg cgcaatggtc
     3301 tccaaatcaa gggacaagcg atgacctata tccaggcgaa cttctgcaac tcgatggccg
     3361 acatggacct gttcttcctg caaatctgtg ccaccaacct gccgcagtac ttctttctgc
     3421 agaacaccat cgagttgttc gacgtaggtc aatggctgga gacagctccc ttgaagcagc
     3481 ctcaaaaggc ggagcaatcc tcgatgctgg agggattcct aaccttcttg gccaccctgg
     3541 tgacgagtcg cactaatctg ggaaacgatg aagccaccca atgcattatt gagatcagtg
     3601 ccttgttggc taccgagaac aagacgcatt cgcagctcct tgaactaatg ccggagcggt
     3661 cgggcaatgt gcataccaaa aactttgaga ccttccttaa gaagctatcg gtttacaagg
     3721 ctccgtcgag tgggagcgag aacctggagc agggtctctt cacgcccatc gacgaggtgt
     3781 gggagaagca ctacgatccg ctgcacgtcc ttttgcgagc agttcatcgt cgagactttc
     3841 aatcatcgct ggaccgcttt acaaactatg tgaagagcaa ggataagatg ccggcaagtg
     3901 gtaacctatg gccacccttc cgattgcctc atgctctgcc cgcaacgagc tccttcagtg
     3961 atccctgcaa gattttgaac tcgcgcatct ttcactccac catcctgtcg atatttttcc
     4021 gtgcagttca cacacgtgat gtttccgagc atctgctggc tctggctgtg ttcctcttag
     4081 agattgctgt ggaaacaagt gatgatgttg gcagtggaac tggagatcgg gcccctcctg
     4141 cgctggctgc tgtggtggag tcatctagcg ggccgggcta tcatggctac ggcacgggac
     4201 ggcatgagcc gcccaagctt ttccactgct atcccacgga caatctaagc tgcaatctgc
     4261 gccacgtggt caagaaagtg tcgctgaagt cacgcgatcc gcaagtgatc acctccagct
     4321 atcggtcgaa cccattttac tcagatctgg actttgaggt tgaagcggat ccagagcaat
     4381 cgatgcgcat gattggtcaa ggggaccccg aaggagatga ggcaacgggt ggagctggac
     4441 tgggaatggg agctcatagc agaaggaatg tctctcaggc gctggtgccg atgagagtgc
     4501 ccggcatgga ggtcgcccta ccaccggatc tttcagtagt tgccgaaacc ggtgtggtta
     4561 tccgccagga tagcaacgaa gatgatctac tgagagaagg caatcatgcc atggatatga
     4621 gtccaccggc tgctctcgat ttccactttc cgctgcagca gatcactttg ccggagagcg
     4681 gaatggaggt ggctattcgg agagatcttc tgctagccga aacgaataat atgggcgcaa
     4741 ttgcaggtgg agctggaggt ggcgccaatg catcggccac accaccagca ggggcttcca
     4801 atgagatgtt ctcgcctacc acacccacag gcagcggtat gctcctgcct ttccagcggg
     4861 ttcagcctgt agccgtaccc agtagcggta atatggatat tgtaccatca aatgccatgg
     4921 gtgccggcgg aagtttcaca tccggcgtaa gtggtagcgg cactggacgt agaatgaact
     4981 acgaaacggg tggagcacgt aagcgatccg tggacattgc catcggtggc agcaataagg
     5041 atgagctgca tttggacgaa agcattttgt ccctgctact aaagcttcat tctcagctct
     5101 caggcacact agatagcttc tcgttgagcg acggtgaaga tcaatcatct gacgacgatt
     5161 cgaccatgga tgtggactgt aacgaagcca gcacctccat ggcagcagcg gagagcactg
     5221 ccctggctga gagaggacgc agtaagcgca actacaagaa cattcatgta tcctcctcgc
     5281 gcatcggtga cggaccattc tttattggta atctgctgcg aaagatcgcc aagcaggatg
     5341 agcagtgcgc ccagagcatc gacgacatcc gtgccagact ctggccgaat cagcgtgaaa
     5401 aacaagcaga ggcgaaagca cgcgaggcca aggagaagga ggagcgccgc aaaaaagcac
     5461 gtgagcgcca gcagaagatg atgcaagact tcgccaacaa gcagaagctc ttcatgcaat
     5521 ccgctgcagc gtcatccagt ggcatgggct acggaccgga ggacgaggac gatgaggagt
     5581 tgtacgagga gcagccgcgt gagaaagagt acgattgcat aatctgcaat tgcactacgc
     5641 ccagtaccga atcgaatcct atcggcttgg tcgttctggt cgagtccagc ggcattgttg
     5701 gtcatcggcg gcgcatcgcc gagcgattgc cgctgccgat aaacgcggag gatgagtccc
     5761 gactggcgca caccactcga ctggcggctg aattcaacag gcgcacggaa ctgctcagtc
     5821 tgaagtttgg cgatgagtcc tggtatctgt ccaataatat ggcctacgac aacggtgtac
     5881 atgtgcagtc gtgtggccac cacgttcatc tcagttgcct agaggcatac cttaagacgc
     5941 tgtacaccac ccaacgtcag ccagttcagg atcgtggcga gttctactgt cccgtgtgcc
     6001 gacagctctc aaactcggtg ctgccgctga gtccacaact ggacagaccc acgcacctgg
     6061 tccgctctgg taatcagcca ttcgaacgtc tggtcgccga tctaacagat ctgattaaag
     6121 agaacgaaac gataccgcag ccaacaaaac tgacagaggc catgggccat gccatggagg
     6181 tgatgacaaa cattgcccag cgcaaggtta aatgctcctc gataacgttc cgcaagctgt
     6241 tcattttcgt tacctcgatt gcgcgtacaa acctggaggc ggagatcatc cagcggggcg
     6301 gatcactatg tacagcgaat gccacgcggt acaagccaaa gcgggaatgc atcgtaccgc
     6361 tactgcacgt gctatcggta catgtgcgtg tcttggttga atggccgctg tggagcagct
     6421 gggcctcgtt agctggcctg cccgttaccg ctacggaacc gttgccggcg cactgcctcg
     6481 aattgattcc cagcatatta gcggatccca ttgctctgct gctcaagttt atcctgctgg
     6541 cgccactgca actcgatcag gattacttta cgtgcatggt gaaagtcatg tacaatctgc
     6601 tgtactatca aattgtggtt cagctgtgcg ttactctcac cgatttagag tgcgatcaca
     6661 ttgtcaaagt ttacggcagc actagcgttg gcagtgacaa ctctgctgcg gaatcccaac
     6721 agcaggagtc tgccgccggg acaacgaaca accgtcgccg tgctggacaa cagcagcaga
     6781 gctcctcgca gctaggaaag gccatggccc tggtgctgag ccagacaaat gacctagttc
     6841 acttgcgacg cgactgcata cccagtacca gcagctcggc ggcagcgtcg gcggctggtt
     6901 cctcctccac aacgtccaca aaccatggag ctagcgcagc cacagcctcc tctgccacga
     6961 cgatcgaggt taatctgaag tccatggaat tacagctgca ggcgctatgc ttgccgtttt
     7021 tgcgagtagc tgccctgctg cgccagcatc tctatcgcca tgagatgccg gagatctcgg
     7081 caccgggact ggaatttgtg cgccttgttt actatttgga actcgtaaca gattctatgg
     7141 actgggattg ctttaatgcc agcaaggggc tatgctttat tcccggcact gagacaacgc
     7201 tgccccagtt ctggtgccag cagttgatgg aggtgcgtcc gccggccgat acggtcagag
     7261 aattggtgct catcaatcag cattcgttgt ggcagcagcc gcgacttctt gaattgccgc
     7321 gcgagtacga acgcttgttc acgtactacc atgagcggcc gtgcctcaat tgctataaag
     7381 tgcccaagga gagctccatc tgcctgctgt gcgggacgat cgtatgcctc aagcagaact
     7441 gctgcgcgga gaatgactgc tgcgaggctg ttcgccatac gctatcctgt ggcggtggca
     7501 taggcatctt tttggtggtc acctccacgt acatcattgt tatccgcgga cgacgcgcct
     7561 gcctttgggg ctcactctat ctggacgact tcgatgagga ggatcgcgat ctcaagcgcg
     7621 gcaaaccttt gtatttgagc aaagaccgct tcaatctcct ggagtcgcag tggctgtccc
     7681 ataagtttgc tcatacaaaa cacacatggg tgtttcaccg ggatctcttg tgaaatatgg
     7741 aagatctact gcgcagcatc caggagctgg ttggccagat ctgagatgcc ctatccacgc
     7801 ctagtcgaac cagtcaacca caaaaccacc caaccacaca accacacgat cacccgtccc
     7861 caaaatccgc cttcagcagc tgaatcacca ctaatccaat caaccacctg actaaaagct
     7921 agtttccaca ttttgtcggc ttttcgtatc cgtttacgca tctgcatttt gtttacggct
     7981 ttcgatcccc atcccccacc acatgcccca aacgcaccta gaagcaatgt aggcaatttg
     8041 caattaattg atattaaaca ttttttttta atacataaac aatacttata aatatggatg
     8101 caaagggata cgaaataccg acaactatac tattgtttgt tgtcaacttt ttaagtgaga
     8161 aacgcataat acaccttata cagaagatca cataatcttg cgatcgacaa caatatttaa
     8221 caaccaatta taaattacaa atattattac ccacccactt gctgggcaaa gacgacgcga
     8281 aaacagcctg gataaaacgg agatggtgca tcgcgcgggt cttcagttgc gttctaccta
     8341 aactaagtct taagtcctta actttataga tttttttttt tagggaaaga aaggcaagaa
     8401 ggcaaataac aaattacgag taacaaataa cacgatacta cacaatataa aattgcctac
     8461 attggactca tgagtttgtg catgtaaaaa atgaaaaaaa gattatatag ttaatatata
     8521 caaatacaat atacactaca gttaattgca acataaacga aaaatgatac aaaaaaaaaa
     8581 aaaaaaacaa taaacgaaaa gcgaattgtg aaatgcatag aaactagttt gcatgcccca
     8641 ttatacataa atattatgta attaagaagc ataagaaaaa agatgattga aagaacgaga
     8701 agggtaatca atctgaattg gaaacgctag gatcatcgga tgtgaatttg ttattagttt
     8761 ttacaaattg tgtgttattt aggcggcgct tcaagggaac ttcgatattg tttgagcgca
     8821 tatgtttatt ttgaacgatc aaattgagcc actgcaaaga ctagctaata tttcaatatc
     8881 tagaagtata tacatacata tatataatag gtttttcaag caaattcaaa attgttgaag
     8941 atagtatctt cggcaaaaaa aaacctggtt gtctagtaat tggtataaat ttccatcaag
     9001 ttatagaaaa attgcatgtg cgttacacga aaagacatgg aagaattgct acgaattgta
     9061 aatacactga aaacgaagct gcatcttgta taattaaata ttaatatatc acagttttat
     9121 cttttttttt tttttactag ttatacaaat ctagatgttt tggttggcct cctagactaa
     9181 ctaaattcaa ttctgcaaaa caaacaaaca agaaaaacac atgatttaag agattaaatg
     9241 gcacagcaca gcaatacaca atacacactc aatacacaca atacacacac agcccctagt
     9301 actctagtac acccaaaaaa gataatgtaa acgtgcattc tgagtgacaa accgaaaacc
     9361 cttaataaaa t