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LOCUS NM_001272371 3068 bp mRNA linear INV 26-DEC-2023 variant F, mRNA. ACCESSION NM_001272371 VERSION NM_001272371.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3068) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3068) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3068) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3068) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3068) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3068) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3068) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3068) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3068) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3068) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3068) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3068) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3068) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3068) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3068) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3068) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3068) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3068) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3068) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3068) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3068) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3068) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3068) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3068 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3068 /gene="ogre" /locus_tag="Dmel_CG3039" /gene_synonym="cb-8; CB8; CG3039; Dm-inx1; Dmel\CG3039; FBpp0070995; inx-1; inx1; Inx1; jnL3; l(1)6Ec; l(1)jnL3; l(1)ogre; Ogre" /note="optic ganglion reduced" /map="6E4-6E4" /db_xref="FLYBASE:FBgn0004646" /db_xref="GeneID:45382" CDS 1584..2672 /gene="ogre" /locus_tag="Dmel_CG3039" /gene_synonym="cb-8; CB8; CG3039; Dm-inx1; Dmel\CG3039; FBpp0070995; inx-1; inx1; Inx1; jnL3; l(1)6Ec; l(1)jnL3; l(1)ogre; Ogre" /note="CG3039 gene product from transcript CG3039-RF; CG3039-PF; ogre-PF; innexin 1; optic ganglion reduced; contrast-blind-8; optic ganglia-reduced; innexin-1" /codon_start=1 /product="optic ganglion reduced, isoform F" /protein_id="NP_001259300.1" /db_xref="FLYBASE:FBpp0306903" /db_xref="GeneID:45382" /db_xref="FLYBASE:FBgn0004646" /translation="MYKLLGSLKSYLKWQDIQTDNAVFRLHNSFTTVLLLTCSLIITA TQYVGQPISCIVNGVPPHVVNTFCWIHSTFTMPDAFRRQVGREVAHPGVANDFGDEDA KKYYTYYQWVCFVLFFQAMACYTPKFLWNKFEGGLMRMIVMGLNITICTREEKEAKRD ALLDYLIKHVKRHKLYAIRYWACEFLCCINIIVQMYLMNRFFDGEFLSYGTNIMKLSD VPQEQRVDPMVYVFPRVTKCTFHKYGPSGSLQKHDSLCILPLNIVNEKTYVFIWFWFW ILLVLLIGLIVFRGCIIFMPKFRPRLLNASNRMIPMEICRSLSRKLDIGDWWLIYMLG RNLDPVIYKDVMSEFAKQVEPSKHDRAK" misc_feature 1644..2639 /gene="ogre" /locus_tag="Dmel_CG3039" /gene_synonym="cb-8; CB8; CG3039; Dm-inx1; Dmel\CG3039; FBpp0070995; inx-1; inx1; Inx1; jnL3; l(1)6Ec; l(1)jnL3; l(1)ogre; Ogre" /note="Region: Innexin; pfam00876" /db_xref="CDD:459975" ORIGIN 1 agtacgtgac gcgtagagca taaaaaacaa acaaacgggc tcacacagag tcccagtgca 61 cagatacaga tacaaagata ctttgccttt gttcctctgc tctgtctccc aagttgatgg 121 cttgtgttag catttttgaa tggctgttta taatggaaca ccttaaacag atttaacgat 181 ctttctggag ttctttgaag gccttgtgct ccgtgctaat tttccaccga aaggaactat 241 tttgagcacc tctagatgat tgttctccag cctgcctgat gaattccagt accacggaca 301 ttgacgatct tcgcttactt gaaaacatat gcgcggtctc actctatata tagaaccctt 361 gcgatggtcc acggactctg gtattttcca tacgattcct tttgatcgtc gaatgttctg 421 caaattgtta atgcactcga acatagtaca tacacaactg aaaaataaat atatttaatc 481 gaatcttttt ttttataaaa attaactata tttataaata taacgttaaa gctatcattt 541 ttaatttcta cgtgctcata aatatatttc acttttacca accttagtca tatttttcac 601 tgtgtagtaa aagccagaca taaaaggaag ctgcagtccc cctttatcaa cccccttttt 661 ctctcttttc tttctctctc tctctcttcc ccatcccttt tagggaagca gtccaaaaag 721 gaagttgcaa aaacaggagc agctgctgca acaaatgaga tttgcacatt ttagtgagcg 781 aatttctctg agaggagcgc ttcttaccaa gaagcgcaaa cacactggga taaaaataaa 841 tacaattcta cgttcgtgct cctgctcacg tacatgagtc cgccgatatc gataccaccg 901 atacctgatt cgagtacttt tgcggcttat ggcctggtga ggagggagtg gcggggtgtg 961 tgtggttaat ggaccgattg cgacagacgt gacacttggc caagtgaaag gtaccaccaa 1021 tgataccatt gtccgcatgt tttcggcatt tcgtgtgggt acagtatgtg ttaagagaat 1081 atatctgttt gctgacattt gattgcacat gtgcgagtcg atttaaagtg agtgtgtgtg 1141 cgcggttttt tcttttgaca gtcatttttc gaaaatatat tgtttgaggc cctgtgggct 1201 gcattcgaga acctgtttca tgcaaattct acggccacct ggcagctgat tcaaaaaata 1261 aaacaaaaaa atttaaagaa gaggaagcag tcccaaaaca aacacacaca cgcgccatgc 1321 tctgacaaaa aatcaaaaat ataaagaaga gcagcaaaac aaaaagccag aagaagagcc 1381 tgacaagaca acggaattct gcttgatatg catcgaaagc tgaaggcgaa gagaattcga 1441 aacaagacaa gaaccggcaa gagaaagtta aagtcgcgtc tagcataaca acgtttccgt 1501 ttgggaagat caaacacact gcccggagga gaagctcccg aaagatcctg atccttgccc 1561 actgagatcc aaactgtgcc aagatgtata agttgctggg tagcctgaag agctacctca 1621 agtggcagga catccagacg gacaacgccg tcttccggct gcacaactcc tttaccacgg 1681 tgctcctgct aacctgcagc ctgatcatca ccgccaccca gtacgtgggc cagccgatta 1741 gctgcatcgt caatggcgta ccgccgcacg tggtcaacac gttctgctgg atccacagca 1801 ctttcaccat gccggacgct tttcgcagac aggttggccg agaggtggct catcccggtg 1861 tggccaatga ttttggcgac gaggatgcca agaagtacta cacctactac cagtgggtgt 1921 gcttcgtgct tttcttccag gccatggcct gttatacgcc caaattcctg tggaataaat 1981 tcgagggcgg actgatgcgc atgattgtga tgggtctgaa tatcacgatc tgcacccgcg 2041 aggagaagga ggccaaacgc gatgccctgc tggactatct gatcaagcac gtgaagcgcc 2101 acaagctgta cgccattcgg tactgggcct gcgaatttct ctgctgcatc aacattatcg 2161 tgcagatgta tctgatgaat cgctttttcg atggcgagtt cctctcgtac ggtacgaata 2221 tcatgaagct ttcggatgtg ccgcaggagc aaagggtgga tcccatggtc tatgtgttcc 2281 cccgggtgac caagtgcacc ttccacaagt atggtccctc tggttcgctg cagaagcacg 2341 actcactctg catcctgccg ctgaacattg tgaacgagaa gacgtacgtg ttcatctggt 2401 tctggttctg gatcctgctc gtcctgctca tcggactgat agtgttccgt ggctgcatta 2461 tctttatgcc gaaattccga ccccgcctcc tgaacgccag caatcgcatg attccgatgg 2521 agatctgtcg ctcgctgtcc cgcaaactgg acatcggtga ctggtggcta atctatatgc 2581 tgggtcgcaa tcttgatccg gtcatctaca aggacgtgat gagcgagttt gccaagcagg 2641 tggagccctc caagcacgac cgtgccaagt agaccagatg tacgagatga tgccccccga 2701 tatgccgttc gatatatcaa tcaccctgcc tattagtccc catcattttg tccgaaaccc 2761 gaaattccga attctgtttt ggatttttta tttttattta gcacaaatca tactacttag 2821 ttgaaactcg agaccaggac agggccacgc ccccaacgcc ccgttggtag ttctgtgatt 2881 aagccctgac cttttaaccc cttccaaaaa cgaacccaat tcccatcccc tgacccaagc 2941 caaaagctat catacacatg gattaatcaa tgatcacaac tcgaatcgct tggcagaaaa 3001 gacaattctt ttattttaat ttttttttta tttttgattt tccatcaatg ataacaagac 3061 aaacaaac