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LOCUS NM_001272366 2805 bp mRNA linear INV 26-DEC-2023 D (CG43736), mRNA. ACCESSION NM_001272366 VERSION NM_001272366.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2805) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2805) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2805) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2805) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2805) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2805) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2805) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2805) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2805) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2805) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2805) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2805) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2805) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2805) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2805) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2805) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2805) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2805) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2805) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2805) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2805) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2805) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2805) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2805 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2805 /gene="CG43736" /locus_tag="Dmel_CG43736" /old_locus_tag="Dmel_CG33691" /old_locus_tag="Dmel_CG33692" /gene_synonym="CG14433; CG32737; CG32737 ORF A; CG32737-ORFA; CG32737-ORFB; CG33691; CG33692; CG4564; CG4571; Dmel\CG43736" /map="6E1-6E2" /db_xref="FLYBASE:FBgn0263993" /db_xref="GeneID:3771905" CDS 403..2238 /gene="CG43736" /locus_tag="Dmel_CG43736" /old_locus_tag="Dmel_CG33691" /old_locus_tag="Dmel_CG33692" /gene_synonym="CG14433; CG32737; CG32737 ORF A; CG32737-ORFA; CG32737-ORFB; CG33691; CG33692; CG4564; CG4571; Dmel\CG43736" /note="CG43736 gene product from transcript CG43736-RD; CG43736-PD" /codon_start=1 /product="uncharacterized protein, isoform D" /protein_id="NP_001259295.1" /db_xref="FLYBASE:FBpp0303294" /db_xref="GeneID:3771905" /db_xref="FLYBASE:FBgn0263993" /translation="MASEDVQITSVIDANGQSLPLHGNSLGGPLGPPVKQERPDDAEI RELAAKMKEQQKQQAAQQASRQAAMQHSNGGAIAASSAGGNMQPPITNGNGQTNIMNY LSRHQKLPNGTMQVVPALASNGRSNGAVSDSGSDKKSSTGPCDEESIQGHFGWAQFGK VSIPYIYRQSEKYCSVRMIELKLLGKYLNCLHPDIYSSCTCVRSYYITDAEARLFIEI NHKHCDGEFGRDIFNQKDLVVRLSDASKFYQFLDICYRKLVSGSKTPSEKCGFIRINK ESVVPYTVRNNQQVVPLFYFEGETENLKTKAELLNGWDLAYLKFCCKVQGIRNELFSS ENVAVISLTDIKSYFPNGTEFEDYWPSKVVDSNLLIGNRANVNNSVNWTRQPSAPPPK VTTSVSGSSGPSSSSGGNMGQNTSAASSSANTAGGQQVTSKSQQQHAASAAAAAATAH QQHLMKQRAAAAAAAAGANGVANAANSFGAAAVAAFNSQAAAAASMLQQSQGNNRMLS QATVQALASSGWMSGQTNLQLHAQMMAQQTHANANRVGSYREHMNNLMMSGSSRQPYS YNNPAISMSSVNNHSGGGGNAPPPLVRSAAGQNANHIFRTSYGMH" ORIGIN 1 ttgcgaagac gggcggacgt gcgtcggcgt cgaatgcgga acaagcgcta aagcaaacta 61 gcgaaaaagt gcgaatatca aaagaaaaga gaaccaaaca aattgttttt ttttttcacc 121 acgagcgtcg tcgcaaaaac aacaaaaagg aatttaataa accaaaagca aacgaggaga 181 gagaaagcag caactaaata taacaacaaa tgcattaaat agttttgttt ttttttttgc 241 cacactgcca aaatgcagtt agcgtttgtt tgtctcctaa tataaaacca aaccaaaagt 301 gtggatatcg aaaagtctgg aaaagtacga taacgcaaga ttacatagag cgcgagcaag 361 acagcattct agagcaaaag agcgagagtg tgcggaggag cgatggccag cgaggatgtg 421 cagatcacta gcgtcatcga tgccaatggc cagagcctac cgctccacgg caacagtttg 481 ggcggtcccc tgggaccgcc cgtcaagcag gagcgtcccg atgacgccga gatccgcgaa 541 ctagctgcca aaatgaagga gcagcagaag caacaggccg cccagcaggc atcccgtcaa 601 gcggccatgc agcactcgaa tgggggcgcc attgcggcat cctcggccgg tggcaacatg 661 cagccgccga tcacaaatgg caatggccag accaatatca tgaactacct atctcgtcat 721 cagaaactac ccaacggcac catgcaggtg gtgcccgcct tggcctccaa tggccgctcg 781 aatggagccg tcagcgactc cggctcggac aagaagtcct ccacgggacc ctgcgacgag 841 gagtccattc aaggccactt cggctgggct cagttcggca aggtatccat accgtacatc 901 tatcgccaat cggagaagta ctgctccgtg cgcatgatcg aactgaaact gctgggcaaa 961 taccttaact gcctgcatcc ggatatctac tccagctgca cctgcgtgcg cagctactac 1021 atcaccgatg cggaggcccg tctcttcatc gagattaatc ataagcattg tgacggcgag 1081 ttcggtcgcg acatcttcaa ccaaaaggat ttggtggtgc gtctcagtga cgcatccaag 1141 ttctatcagt tcctggatat ttgctatagg aaactagtct ccggcagcaa gacgccgtcg 1201 gagaagtgcg gctttattcg catcaacaag gagtccgtgg tgccctacac tgtgcgcaac 1261 aatcagcagg ttgtgccgct cttttatttt gagggcgaga ccgagaatct aaagaccaaa 1321 gcggagctgc tcaatggctg ggacctggct tatctaaagt tctgctgcaa ggtgcagggc 1381 atacgcaatg agctcttctc cagcgagaac gtggccgtga tttcgctgac ggacatcaaa 1441 agctacttcc caaatggcac cgaattcgag gactactggc ccagcaaggt ggttgactcc 1501 aatctgctca ttggcaatcg ggccaatgtc aacaactcgg tcaattggac ccgtcaaccc 1561 tcggcgccgc ctccaaaagt gaccacctcc gtttccggat cgtccggccc ttcctcctcc 1621 agcggcggca acatgggcca gaacacatca gccgcatcat cctccgcgaa caccgctggt 1681 ggccaacagg tgacctcaaa atctcagcaa cagcacgctg cctctgccgc cgcagcagcg 1741 gcgacggcgc atcaacagca tctgatgaag caacgcgccg ccgcagcagc agctgccgcc 1801 ggcgccaatg gtgtggcgaa tgcggcaaat agttttgggg cagccgcggt agcggccttc 1861 aattcccagg cggcggcagc ggcgtcgatg ctccagcagt cgcagggcaa caacaggatg 1921 ttatcgcagg ccaccgtcca ggctttggcc agcagcggat ggatgtccgg acagacaaac 1981 ctgcagctcc acgcccagat gatggcgcag caaacgcatg cgaacgccaa tcgcgtggga 2041 agctatcggg agcacatgaa caacctgatg atgagcggca gcagccggca gccgtattcc 2101 tacaacaacc ccgcgatctc catgtcctcg gtgaacaacc atagtggtgg cggcgggaat 2161 gccccacctc cgctcgtccg ctcggcggca ggtcaaaatg ccaaccacat attccgaacc 2221 tcttacggca tgcattaggg tggctcaaga aaggctcaga aaagtagagt gaaataaata 2281 agctatcggt atcggaggcg cgctaaggtg gagaatatat cgctcgcatt gggattacac 2341 ggtactaccc gatcgattaa caccaccgcc tactactcca ctccataaat aagtccgtag 2401 aactaaaccc aaacataaac acacacacac acaaaaaacg ctcacaccca cccacacaag 2461 catctgtaca tacatcatgt tgtagagttt tcctataaac caaaagtatc cctagcgatt 2521 gcatgacctc tccgattaag ataaaaatga acgtagaatt aaagtcttta taaacattat 2581 atatacgtat ctaattttaa ttgtttcttt gtcaatggaa tgatgatgat ttcgttataa 2641 ccttactttg tatattatta tgataatact tttttctggt tttgctctta aaacttcttc 2701 tttttttttt ctctttttgt atgatcaaat agtaacttaa tgttaaaacg gaactacaac 2761 atattttgaa aaacataaat tcgcataata aaagagaaaa aaccg