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LOCUS NM_001272319 3403 bp mRNA linear INV 26-DEC-2023 G (CG44774), mRNA. ACCESSION NM_001272319 VERSION NM_001272319.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3403) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3403) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3403) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3403) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3403) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3403) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3403) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3403) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3403) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3403) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3403) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3403) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3403) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3403) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3403) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3403) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3403) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3403) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3403) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3403) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3403) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3403) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3403) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3403 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3403 /gene="CG44774" /locus_tag="Dmel_CG44774" /old_locus_tag="Dmel_CG4068" /old_locus_tag="Dmel_CR43698" /old_locus_tag="Dmel_CR43699" /gene_synonym="CG4068; CR43698; CR43699; Dmel\CG44774; hp-CG4068" /map="4D6-4D7" /db_xref="FLYBASE:FBgn0266000" /db_xref="GeneID:31424" CDS 618..2483 /gene="CG44774" /locus_tag="Dmel_CG44774" /old_locus_tag="Dmel_CG4068" /old_locus_tag="Dmel_CR43698" /old_locus_tag="Dmel_CR43699" /gene_synonym="CG4068; CR43698; CR43699; Dmel\CG44774; hp-CG4068" /note="CG44774 gene product from transcript CG44774-RG; CG44774-PG" /codon_start=1 /product="uncharacterized protein, isoform G" /protein_id="NP_001259248.1" /db_xref="FLYBASE:FBpp0309840" /db_xref="GeneID:31424" /db_xref="FLYBASE:FBgn0266000" /translation="MFNFHKPRVYRSADGCCICRAKSSSSRFTASRKYEKESMQCFNL NEPRNGEICNACVLLVKRYKRLPIGSKRHWGHVVDARAGPGTKSMAKQKKRDNADAKS RAANGSGNSFLPEKFAKNRKSKERAATEAAAARPSSLSLSTSAVNRPSSTSPTSDHQH SDSNESYDDEQTLPANKPYQTRKRTAAAALATANESKEPNNKRPKLTGSYRRRQLVPQ KNRRSVDNIPFFEENDLVRLEVCCGVVFQSLSLGSTYYIIDPELYKPCAKHQRIRHQQ MQLQLQHQQAEAVNATPTPTTTPTVTTNSSPHTTQVQSKVPTIGPLKKHHLFCKRQSG SFPQGEIHSISPIPMSKTETDGQPLSPKPHSTLSLILKPTVQMQQQQPQSQAQSQVVS VGAASPSSLSSLSNCSTSSSVATKFNDNSSDSGFDEHVLERKSVSPPTDECKLRGTTG GRVQLILVSGLPLAGQSQNLMLAGNEFTARIVQQREAGIAAATAAGAGTGTPSTGATP LKINVLGGSQGNSNKMRAIFNSASSIQHENGVTTIVPASSLAASNQTAAMNAIAPSTV TITPSSVGKKVTVPNPKFILLKPAKFVGPASANEVNTATLTAEPHAPPPPQAKIV" misc_feature 621..1424 /gene="CG44774" /locus_tag="Dmel_CG44774" /old_locus_tag="Dmel_CG4068" /old_locus_tag="Dmel_CR43698" /old_locus_tag="Dmel_CR43699" /gene_synonym="CG4068; CR43698; CR43699; Dmel\CG44774; hp-CG4068" /note="Protein Family FAM60A; Region: FAM60A; pfam15396" /db_xref="CDD:464703" ORIGIN 1 cgtcagttgg cctttcgggt ttctagcgtg cgcacgtgtt ttagtttttc tcctccacta 61 acctttaaat ttgaagaatg gcaaaaaaaa aaaaaaaaaa atgatataaa ttgtgtgtaa 121 ttgaatagca acaaaaatgt ctgtgtattt aagcacaaat gcagccagct acagtgaagc 181 ctggacaatg gatgttggca atgcacgcgc tcagaacaac gggtgcaaag ggaaaaagcg 241 cgcacaaata acactagcac aataacagtg aacaccgtcg cagcacacac caaacacaga 301 aacccgaatt gccactcaaa acactttcca aaaacaaaga agaaacatca ttttaaatca 361 agcaaggaaa gcaaaaaaca ttaaaagcgt aaaaaaaaat agaaaaaaag cattaaaagc 421 gtaaaaaaag gaaaaaaaaa aaaaaaacaa aacattaaaa gcgtcaaaaa aaaaaaagag 481 gaaaaaaaca ttaaaagcgt aaaaaagaga gaaaaaaaag aacaggaaaa tatagtcatc 541 gtaaatcatt gtgaaatctc cacggaacat tgaaaaccca aatatcaaaa ccacaaacat 601 actccaataa caaagccatg ttcaattttc ataagccacg cgtctaccgc tctgcggatg 661 gatgttgcat ttgccgggcc aagtcgagca gctcgcgctt caccgcctcc cgcaagtacg 721 aaaaggagtc gatgcagtgc tttaatctta acgagcctcg aaatggtgaa atctgcaacg 781 cctgcgtcct tttggtcaag cgctacaagc gactacccat aggtagtaag cgtcactggg 841 gtcatgtggt ggatgcccgt gctggacccg gcaccaagtc catggccaaa cagaagaagc 901 gcgacaacgc agacgcgaag agcagggccg ccaatggcag tggcaactca ttcctgcccg 961 agaagttcgc caagaaccgc aagagcaagg agagagcggc gactgaagca gcagcagcaa 1021 gaccatcatc attatcatta tcgaccagtg ctgtaaatcg acctagcagc acttcaccca 1081 cctcggatca tcagcacagc gattcgaatg agagctacga tgatgagcag acgctgccgg 1141 caaataaacc atatcaaacg cgcaagcgaa ccgcggctgc cgcactagcg actgccaacg 1201 aatcgaagga gcccaacaac aaacgtccga agttaaccgg cagctaccga cgtcgtcagc 1261 tggtgccaca aaagaatcgt cggtccgtcg acaatatccc cttcttcgag gaaaatgatc 1321 tcgttcgcct ggaggtctgt tgcggtgtgg tcttccagag tttatccctc ggcagcactt 1381 actacatcat cgatccggag ctgtacaaac cgtgtgcgaa gcaccagcgc atacgccacc 1441 agcagatgca gcttcagctg caacatcagc aggcggaggc ggtaaatgcc actccaaccc 1501 ccacgaccac tccaacggtc acgaccaact catcgccaca caccactcaa gttcaaagta 1561 aggtgccaac gattgggcca cttaagaagc atcatttgtt ctgcaagcga caatcggggt 1621 catttccgca aggtgaaatc catagcataa gtccaattcc aatgagcaag actgaaacgg 1681 acggccaacc actgtcgccg aagccacatt ccactctgtc cctgatcctc aagcccaccg 1741 tccaaatgca acaacagcaa ccacagtcgc aggcccagag ccaagtggtc tccgtgggcg 1801 ctgcgtcgcc ctcgtcgctg tcctccttgt ccaactgctc cacctcgtcc tcggtggcca 1861 ccaagttcaa cgacaattcc tcggattcgg gattcgatga gcatgtgcta gagcgcaagt 1921 cggtcagccc accaacggac gagtgcaaac tgcgcggaac cacgggtggc agggtgcagc 1981 taatcctagt cagcggcctg cctctggctg gacaatctca gaatctgatg ctggcgggca 2041 acgagtttac ggcacgtatt gtgcagcaaa gagaagccgg aattgcagct gcaaccgcag 2101 ccggagccgg aaccggtact ccatcgacag gagcaacccc actcaaaatc aacgtacttg 2161 gcggatctca gggcaatagc aataaaatgc gtgctatatt caatagcgcc agcagcattc 2221 agcatgagaa cggcgtgacc accattgtgc cagcctcctc gttggcagcc agcaatcaaa 2281 cagctgccat gaacgcaatt gcgccgagca cggtgactat aacgccgtca tcggtgggca 2341 aaaaggtgac ggtgccaaat cccaagttta tcctgctgaa gccagccaaa tttgtgggac 2401 cagcatcggc aaacgaggta aacacagcga ctctgacggc ggaaccacat gctcctcccc 2461 ctccacaagc caaaatcgta taggcgattg aaaacgaaag agagagagat agataggaga 2521 tgtctagcgt ctcgcaggga atatagtaac caccctgtta cgtttgttat acactaagct 2581 atttaacggc gaccgaaagc caagctccct tccttagccg caggttccat atcattcaag 2641 agtaatattt aacatttcaa ggaacacctt agcctagacg ttactttagc ctagactaga 2701 gcactgaact acagtatggg cgaatgagtc cacgcaaaac tcacacccac acagagccat 2761 acaaattgta acaattatta gtgtgttaat tgtttaatgt agcgccccgg tagcctgtag 2821 tttgactcca acaagttcgc tcctggcgct tcacaggcgc tggaaaatct taaccgccgg 2881 aagtcacttc cgctggcttt gattttccag cgtcagtcaa gcggaaggag ggacttgttt 2941 gagtccaact acaggatact ggggggccct taagaacaga atggggaatg agtccacgca 3001 aaacacacac ccacacacac acagaaccat acaaattgta accattattt gagtgttaat 3061 tgttgactgt agcgccctgg tagcctgtag tttgactcca acaagttcgc tcctggcgct 3121 tcacaggcgc tggaaaatct taaccgccgg aagtcacttc cgctggcttt gattttccag 3181 cgtcagtcaa gcggaaggag ggacttgttt gagtccaact acaggatact ggggggccct 3241 taagaacaga atggggaatg agtccacgca aaacacacac ccacacacac acagaaccat 3301 acaaattgta accattattt gagtgttaat tgttgactgt agcgccctgg tagcctgtag 3361 tttgactcca acaagttcgc tcctggcgct tcacaggcgc tgg