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LOCUS NM_001272305 1852 bp mRNA linear INV 26-DEC-2023 transcript variant C, mRNA. ACCESSION NM_001272305 VERSION NM_001272305.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 1852) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1852) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1852) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 1852) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 1852) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 1852) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 1852) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 1852) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 1852) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 1852) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 1852) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 1852) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 1852) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 1852) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 1852) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 1852) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 1852) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 1852) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 1852) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 1852) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 1852) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 1852) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 1852) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1852 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..1852 /gene="Tip60" /locus_tag="Dmel_CG6121" /gene_synonym="6121; CG6121; DmEG0007.7; Dmel/TIP60; Dmel\CG6121; Dmel\TIP60; dmHAG405; dTip60; dTIP60; EG0007.7; EG:EG0007.7; TIP-60; tip60; TIP60" /note="Tat interactive protein 60kDa" /map="4A6-4B1" /db_xref="FLYBASE:FBgn0026080" /db_xref="GeneID:31362" CDS 98..1723 /gene="Tip60" /locus_tag="Dmel_CG6121" /gene_synonym="6121; CG6121; DmEG0007.7; Dmel/TIP60; Dmel\CG6121; Dmel\TIP60; dmHAG405; dTip60; dTIP60; EG0007.7; EG:EG0007.7; TIP-60; tip60; TIP60" /EC_number="2.3.1.48" /note="CG6121 gene product from transcript CG6121-RC; CG6121-PC; Tip60-PC; Tat-interactive protein; Tat-interactive protein-60 KDa" /codon_start=1 /product="Tat interactive protein 60kDa, isoform C" /protein_id="NP_001259234.1" /db_xref="FLYBASE:FBpp0305388" /db_xref="GeneID:31362" /db_xref="FLYBASE:FBgn0026080" /translation="MKINHKYEFDDDVASICESTAALTEGCRLPVRMHKTDDWPLAEI VSIKELDGRRQFYVHYVDFNKRLDEWVNEEDLYTRKVQFPRRDGSQTGTSTGVTTPQR HHSLAGSVSRPTSPQHPGSGALAAIPQTPTGASGSVPPPAGIPNSVAPPGTPSSGGEL VNGNNLAAALQKRINRKRKNHGGSAHGHHSLTSQQQQSHPHPTTPQTPTATPVHVTGD GLISGAANDDGDGSQDGKTPTPRQSGSMVTHQDDVVTRMKNVEMIELGRHRIKPWYFS PYPQELCQMPCIYICEFCLKYRKSRKCLERHLSKCNLRHPPGNEIYRKHTISFFEIDG RKNKVYAQNLCLLAKLFLDHKTLYYDTDPFLFYVMTEFDSRGFHIVGYFSKEKESTED YNVACILTMPPYQRKGYGKLLIEFSYELSKFEGKTGSPEKPLSDLGLLSYRSYWAQTI LEIFISQNPSTDGEKPTITINDICECTSIKKEDVISTLQNLNLINYYKGQYIVCINRV IIEQHRRAMDKRKIRIDSKCLHWTPKDWSKRSK" misc_feature 176..367 /gene="Tip60" /locus_tag="Dmel_CG6121" /gene_synonym="6121; CG6121; DmEG0007.7; Dmel/TIP60; Dmel\CG6121; Dmel\TIP60; dmHAG405; dTip60; dTIP60; EG0007.7; EG:EG0007.7; TIP-60; tip60; TIP60" /note="chromo barrel domain of human tat-interactive protein 60, and similar proteins; Region: CBD_TIP60_like; cd18985" /db_xref="CDD:350848" misc_feature order(212..217,221..226,269..271,275..286,296..298, 302..313,317..322,341..343,350..355) /gene="Tip60" /locus_tag="Dmel_CG6121" /gene_synonym="6121; CG6121; DmEG0007.7; Dmel/TIP60; Dmel\CG6121; Dmel\TIP60; dmHAG405; dTip60; dTIP60; EG0007.7; EG:EG0007.7; TIP-60; tip60; TIP60" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:350848" misc_feature order(215..217,275..277,284..286,296..298) /gene="Tip60" /locus_tag="Dmel_CG6121" /gene_synonym="6121; CG6121; DmEG0007.7; Dmel/TIP60; Dmel\CG6121; Dmel\TIP60; dmHAG405; dTip60; dTIP60; EG0007.7; EG:EG0007.7; TIP-60; tip60; TIP60" /note="putative methylated histone tail binding site [chemical binding]; other site" /db_xref="CDD:350848" misc_feature order(266..268,272..289,293..307) /gene="Tip60" /locus_tag="Dmel_CG6121" /gene_synonym="6121; CG6121; DmEG0007.7; Dmel/TIP60; Dmel\CG6121; Dmel\TIP60; dmHAG405; dTip60; dTIP60; EG0007.7; EG:EG0007.7; TIP-60; tip60; TIP60" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:350848" misc_feature order(266..268,275..277,287..289,293..295,305..307) /gene="Tip60" /locus_tag="Dmel_CG6121" /gene_synonym="6121; CG6121; DmEG0007.7; Dmel/TIP60; Dmel\CG6121; Dmel\TIP60; dmHAG405; dTip60; dTIP60; EG0007.7; EG:EG0007.7; TIP-60; tip60; TIP60" /note="putative RNA binding site [nucleotide binding]; other site" /db_xref="CDD:350848" misc_feature <860..1696 /gene="Tip60" /locus_tag="Dmel_CG6121" /gene_synonym="6121; CG6121; DmEG0007.7; Dmel/TIP60; Dmel\CG6121; Dmel\TIP60; dmHAG405; dTip60; dTIP60; EG0007.7; EG:EG0007.7; TIP-60; tip60; TIP60" /note="MYST -like histone acetyltransferase; Provisional; Region: PLN00104" /db_xref="CDD:215056" ORIGIN 1 cactgtggcg gtaatcgatt ggtcgatagt tatttacgtt tcgctatctg gcaatactgc 61 tgttttagga aaaaaaaaac gcgtaaaata taaacaaatg aaaattaacc acaaatatga 121 gttcgacgac gatgtggcct ccatatgcga gtcaacggcc gccctaaccg agggatgtcg 181 tttacccgtc aggatgcaca aaacggacga ctggccacta gcggagattg tgagcatcaa 241 ggagttggat gggcgccggc agttttacgt gcactatgtg gacttcaaca agcgcttgga 301 cgagtgggtc aacgaggagg atctgtacac gcgaaaggtg caatttccgc ggagagacgg 361 ctcacaaaca ggcaccagca ctggagtgac cacgccacag cgccaccatt ccctagcggg 421 cagcgtttct cggcctacat caccgcaaca ccctggttcc ggggctctgg cagccatccc 481 ccagactcct actggtgcat caggcagtgt tcctccccct gctggcattc caaactctgt 541 ggctccaccc ggaacaccaa gcagtggggg agagcttgtg aatggcaaca atctggccgc 601 agcccttcag aaacgcatca atcgcaagcg aaaaaaccac ggaggctcgg cccatggaca 661 ccacagtctg accagtcaac agcagcagtc acatccgcat cctacaactc cgcagacacc 721 cacggctacg cccgtgcatg tgaccggcga cggtttaata agcggagcgg ccaatgatga 781 tggtgatgga tcgcaggatg gcaagacgcc cacgccgagg caatcaggca gcatggttac 841 gcaccaggac gacgtggtca cccgcatgaa gaacgtggag atgatcgagc tgggcaggca 901 tcgcattaag ccctggtatt tctcacccta tccgcaagag ctgtgtcaaa tgccctgcat 961 ctacatctgc gagttctgcc tgaagtacag gaagagcagg aagtgcctgg agaggcacct 1021 gtccaagtgc aatcttaggc atccaccggg aaacgagatc tatcgcaaac atacaatttc 1081 cttctttgaa atcgatggac gcaaaaacaa ggtgtatgcc cagaacttgt gcctgcttgc 1141 caaactcttt ctcgaccaca agacactcta ctatgatacc gatccgtttc tcttctacgt 1201 aatgacagag ttcgactcgc gcggcttcca catagtaggg tacttctcca aggagaagga 1261 gagcacagag gactacaacg tggcctgcat tctcacaatg cctccgtatc agcgcaaggg 1321 ctacggcaag ctgctcattg agttcagcta cgagttgtcc aagttcgagg gcaagacggg 1381 atcgccggag aaaccattgt ctgatctggg tttgctgtcc tatcgatcgt actgggcgca 1441 aaccatactg gagatcttta tcagccaaaa cccgagcacg gacggcgaaa agcccactat 1501 aactataaac gacatctgcg aatgcacatc catcaaaaaa gaggacgtga tctcaacgct 1561 gcagaacctg aacctgatca actactacaa gggccagtac atcgtgtgca tcaaccgggt 1621 tatcatcgag caacaccggc gagcaatgga caagcgcaag atccgcatcg actcgaaatg 1681 cctgcactgg acacccaaag actggtccaa gcgctccaaa tgatttccgc taccaatatt 1741 cttcatcgga tgatcctggc ttcgttgtag cttgtagttt tcatttacag tttccgtttt 1801 taatgttata aactagttta tatcatacaa tattatatat acttttgaga cg