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LOCUS NM_001272285 2890 bp mRNA linear INV 26-DEC-2023 C (CG10803), mRNA. ACCESSION NM_001272285 VERSION NM_001272285.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2890) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2890) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2890) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2890) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2890) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2890) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2890) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2890) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2890) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2890) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2890) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2890) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2890) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2890) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2890) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2890) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2890) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2890) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2890) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2890) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2890) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2890) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2890) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001272285.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2890 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2890 /gene="CG10803" /locus_tag="Dmel_CG10803" /gene_synonym="Dmel\CG10803; rop-1" /map="3D4-3D4" /db_xref="FLYBASE:FBgn0029666" /db_xref="GeneID:31320" CDS 477..2201 /gene="CG10803" /locus_tag="Dmel_CG10803" /gene_synonym="Dmel\CG10803; rop-1" /note="CG10803 gene product from transcript CG10803-RC; CG10803-PC" /codon_start=1 /product="uncharacterized protein, isoform C" /protein_id="NP_001259214.1" /db_xref="FLYBASE:FBpp0304001" /db_xref="GeneID:31320" /db_xref="FLYBASE:FBgn0029666" /translation="MEKEAISNQPLKDEPSKDEPNQSEGTAISTIPAIDKLRRFCFIG STDEPVYTTPALDLVVENNFASLKELCSQVSEDELVECLLSVLGSEPNEEQPPRPDEP LLILAVFFTTCEDEKKRNAVRNRFTDLITSESDLLLFVQLVKRVQKLLERKTPFNRTV RKAVLNWYGTKSLDRLLHFWSIGDGNRWPAHRDLLYRLHFRHANFLPEIIAALRLLSS SPKELSQWPDFLTPLTSFRETIEGVVKLRLLTDPEQAISIVKKLSLSWEHVPFHLLHD PRLAHFLIPHMSYEQLLQKWPRLSRLNSRVRPFAEQLLDKKKLKASNVPPVRLLLEDM RLRKPKKVVNQLVLPSSLKNKNTFKFQCATTSFQKASFLHSVYEISFGLNKALGRRLH ITLNLEQAYLGKYLSGPCRSLKYLDALVALGFGYFRSDRKVTVEFWHDRSGKLKALPW TNEMSVSEAKTCCENQKVGKVRQSLNEILFRALLDMQNTFDVFLVLVPGAARGNPENN SKCLAALMDKYREKRNSNAKFIMVSLRQRQRSMIYSSGRNENLLELCSLDKHTPRLIN AFVRNKFY" misc_feature <876..1469 /gene="CG10803" /locus_tag="Dmel_CG10803" /gene_synonym="Dmel\CG10803; rop-1" /note="TROVE domain; Region: TROVE; pfam05731" /db_xref="CDD:461724" ORIGIN 1 attgttttta tcgcgaattg ccaacgctct gtacaagtga tgtacaacac gagttaaata 61 caaaacaaaa cgaacggata aaagttgcac gctgggcgaa tcgtgacaaa gagggcgtgg 121 caaatcgaaa tatagtatag atcaaatccc cagaaggcgc ggcataaacg taatatgcga 181 aaatcgctgc catgaaaaag ggcaagggat caagctccct tggatcgaag gaatcatcgg 241 ggagaccatc cacggcagtc ctggtgttca agaagtgcgc tagatttgcg gactcttcag 301 aatcggcgga gatccagcag gacggcaagg agcaactgcc tgagaggcaa gactcgctgg 361 atgccaagga attggtgggc atactaatag aagcacagga cgtgtggtta gccatcccgc 421 tgacgcatta aacggaatat ttaacttcta gctgtgataa ggaaattgct gcaggaatgg 481 aaaaagaggc gattagcaat cagccattaa aggatgagcc atcgaaagat gaacctaacc 541 aaagcgaggg cactgccatt tccaccatac cggcgattga taaactacgt cgcttctgct 601 ttattggatc cacggacgag cccgtctata ccacgcccgc actggatctt gttgtcgaga 661 acaatttcgc atcgctaaag gaactctgct cccaagtgag tgaagacgag ctggtcgagt 721 gcttgttgag cgttttgggc agcgaaccaa atgaggagca acctccccga cccgacgagc 781 cgctcctaat cctggctgtt ttctttacca cgtgcgaaga cgagaagaag cgaaatgcgg 841 tgcgtaatag attcaccgac ctgatcacca gcgaatcgga tcttctactg ttcgtccagt 901 tggtcaagcg agtccagaag ttgctcgaac gtaaaacgcc cttcaatcgc acagtgcgaa 961 aggccgtcct caactggtat ggcacgaaat cgcttgatcg ccttctccac ttctggtcaa 1021 taggcgatgg aaatcgttgg cctgcgcatc gcgatctact gtaccgcctc cattttcggc 1081 atgccaattt tttaccggaa atcattgctg ccttaaggct gctctcatca tcgccaaagg 1141 agctatcgca gtggcctgat tttttaacgc ccttgaccag ctttcgcgaa actattgagg 1201 gtgttgtgaa gcttcggcta ctcacggatc ccgaacaggc tatctccatt gtgaagaagt 1261 tgtcgctgag ctgggagcat gtgccttttc atttgcttca cgaccccagg ctggcgcatt 1321 ttcttattcc acacatgagc tatgagcaac ttcttcagaa atggccacgc ctctcgcgac 1381 ttaactcccg agtgcgcccc tttgctgagc aattgctgga taagaagaag cttaaggcga 1441 gcaatgttcc gcccgtacgt ctgctgttgg aggatatgcg tttgaggaag cccaaaaagg 1501 tggttaatca gttggtacta ccttcgtcac tcaaaaacaa gaatacattt aaattccagt 1561 gtgcaactac ttcgttccaa aaggcgagtt tcctgcatag cgtctacgaa atatcctttg 1621 gcctgaacaa ggcactcggt aggcgactgc acattaccct caatctggag caggcctatc 1681 tgggcaaata cctttctggt ccatgtcgtt cgctgaagta cttagacgcc ctggtggcat 1741 tgggttttgg ctatttccgc agcgaccgaa aggtgacggt ggagttttgg cacgaccgca 1801 gtggcaaatt gaaggcgttg ccgtggacaa atgagatgtc tgtttcagag gccaagacct 1861 gttgcgagaa tcagaaggtg ggcaaagtga ggcaatcgct aaatgaaatt ctgttcagag 1921 cgctattgga tatgcagaat acgttcgacg tgtttttggt actagtgccg ggtgccgcgc 1981 gaggaaatcc ggaaaataat tcaaagtgct tggctgctct aatggataag tatcgcgaaa 2041 agcgaaactc taatgctaaa ttcataatgg tgagcctgcg gcagcgtcaa cgctccatga 2101 tatattccag cggacgaaac gagaacttgt tagagttgtg cagcctggat aagcacacac 2161 cgcgtttgat taacgcattt gtccgcaata agttctacta gacggtgagc tgcattgcga 2221 atatcggacg acccatttca tcgcacaact gcaggcacaa agcagttcca tttgttgaag 2281 gacgatggcc atcggttagt tgccatcggc catctctctc gctttcatag atgcctggtc 2341 gttcggtcct ctcactccat tttcgaatag cttttgtgta acatattcat aggcccttgg 2401 tgtgtaatcg ttgtagaacc aggccaccaa ctcaatgcta cattcatatt tacatactac 2461 taattgtaat agttgcatcc cggaatccag aatttaaaat tcctatcggg ctagtaagat 2521 attatcgctc gttttgtgta atgaaattgt gtattagcat ttgtaatttt tactcgattt 2581 ggtgtattca ttttgttaaa attaaaccga atcaactgaa ctgaacttaa tctaaattca 2641 atttggattt aaaacaatct caatgaaatc gcaagcgcaa acaacaacaa aagaaccgac 2701 aaaaaaaaaa aaaaagaaaa acaaattgcc ttacaaacaa aaatgttagt aaaactttca 2761 ttttagttta gactttttca aaaattgaat actggaactg aaacacaatt tatggcattt 2821 agataaagtt aaagttaaat ataaactaat tgtatggcct atgtattgaa tattaatcta 2881 acgtaacatt