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LOCUS NM_001272284 2896 bp mRNA linear INV 26-DEC-2023 B (CG10803), mRNA. ACCESSION NM_001272284 VERSION NM_001272284.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2896) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2896) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2896) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2896) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2896) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2896) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2896) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2896) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2896) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2896) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2896) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2896) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2896) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2896) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2896) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2896) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2896) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2896) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2896) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2896) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2896) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2896) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2896) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001272284.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2896 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2896 /gene="CG10803" /locus_tag="Dmel_CG10803" /gene_synonym="Dmel\CG10803; rop-1" /map="3D4-3D4" /db_xref="FLYBASE:FBgn0029666" /db_xref="GeneID:31320" CDS 483..2207 /gene="CG10803" /locus_tag="Dmel_CG10803" /gene_synonym="Dmel\CG10803; rop-1" /note="CG10803 gene product from transcript CG10803-RB; CG10803-PB" /codon_start=1 /product="uncharacterized protein, isoform B" /protein_id="NP_001259213.1" /db_xref="FLYBASE:FBpp0304000" /db_xref="GeneID:31320" /db_xref="FLYBASE:FBgn0029666" /translation="MEKEAISNQPLKDEPSKDEPNQSEGTAISTIPAIDKLRRFCFIG STDEPVYTTPALDLVVENNFASLKELCSQVSEDELVECLLSVLGSEPNEEQPPRPDEP LLILAVFFTTCEDEKKRNAVRNRFTDLITSESDLLLFVQLVKRVQKLLERKTPFNRTV RKAVLNWYGTKSLDRLLHFWSIGDGNRWPAHRDLLYRLHFRHANFLPEIIAALRLLSS SPKELSQWPDFLTPLTSFRETIEGVVKLRLLTDPEQAISIVKKLSLSWEHVPFHLLHD PRLAHFLIPHMSYEQLLQKWPRLSRLNSRVRPFAEQLLDKKKLKASNVPPVRLLLEDM RLRKPKKVVNQLVLPSSLKNKNTFKFQCATTSFQKASFLHSVYEISFGLNKALGRRLH ITLNLEQAYLGKYLSGPCRSLKYLDALVALGFGYFRSDRKVTVEFWHDRSGKLKALPW TNEMSVSEAKTCCENQKVGKVRQSLNEILFRALLDMQNTFDVFLVLVPGAARGNPENN SKCLAALMDKYREKRNSNAKFIMVSLRQRQRSMIYSSGRNENLLELCSLDKHTPRLIN AFVRNKFY" misc_feature <882..1475 /gene="CG10803" /locus_tag="Dmel_CG10803" /gene_synonym="Dmel\CG10803; rop-1" /note="TROVE domain; Region: TROVE; pfam05731" /db_xref="CDD:461724" ORIGIN 1 attgttttta tcgcgaattg ccaacgctct gtacaagtga tgtacaacac gagttaaata 61 caaaacaaaa cgaacggata aaagttgcac gctgggcgaa tcgtgacaaa gagggcgtgg 121 caaatcgaaa tatagtatag atcaaatccc cagaaggcgc ggcataaacg taatatgcga 181 aaatcgctgc catgaaaaag ggcaagggat caagctccct tggatcgaag gaatcatcgg 241 ggagaccatc cacggcagtc ctggtgttca agaagtgcgc tagatttgcg gactcttcag 301 aatcggcgga gatccagcag gacggcaagg agcaactgcc tgagaggcaa gactcgctgg 361 atgccaagga attggtgggc atactaatag aagcacagga cgtgtggtta gccatcccgc 421 tgacgcatta aacggaatat ttaacttcta gctgtgataa ggaaattggt aaacctgcag 481 gaatggaaaa agaggcgatt agcaatcagc cattaaagga tgagccatcg aaagatgaac 541 ctaaccaaag cgagggcact gccatttcca ccataccggc gattgataaa ctacgtcgct 601 tctgctttat tggatccacg gacgagcccg tctataccac gcccgcactg gatcttgttg 661 tcgagaacaa tttcgcatcg ctaaaggaac tctgctccca agtgagtgaa gacgagctgg 721 tcgagtgctt gttgagcgtt ttgggcagcg aaccaaatga ggagcaacct ccccgacccg 781 acgagccgct cctaatcctg gctgttttct ttaccacgtg cgaagacgag aagaagcgaa 841 atgcggtgcg taatagattc accgacctga tcaccagcga atcggatctt ctactgttcg 901 tccagttggt caagcgagtc cagaagttgc tcgaacgtaa aacgcccttc aatcgcacag 961 tgcgaaaggc cgtcctcaac tggtatggca cgaaatcgct tgatcgcctt ctccacttct 1021 ggtcaatagg cgatggaaat cgttggcctg cgcatcgcga tctactgtac cgcctccatt 1081 ttcggcatgc caatttttta ccggaaatca ttgctgcctt aaggctgctc tcatcatcgc 1141 caaaggagct atcgcagtgg cctgattttt taacgccctt gaccagcttt cgcgaaacta 1201 ttgagggtgt tgtgaagctt cggctactca cggatcccga acaggctatc tccattgtga 1261 agaagttgtc gctgagctgg gagcatgtgc cttttcattt gcttcacgac cccaggctgg 1321 cgcattttct tattccacac atgagctatg agcaacttct tcagaaatgg ccacgcctct 1381 cgcgacttaa ctcccgagtg cgcccctttg ctgagcaatt gctggataag aagaagctta 1441 aggcgagcaa tgttccgccc gtacgtctgc tgttggagga tatgcgtttg aggaagccca 1501 aaaaggtggt taatcagttg gtactacctt cgtcactcaa aaacaagaat acatttaaat 1561 tccagtgtgc aactacttcg ttccaaaagg cgagtttcct gcatagcgtc tacgaaatat 1621 cctttggcct gaacaaggca ctcggtaggc gactgcacat taccctcaat ctggagcagg 1681 cctatctggg caaatacctt tctggtccat gtcgttcgct gaagtactta gacgccctgg 1741 tggcattggg ttttggctat ttccgcagcg accgaaaggt gacggtggag ttttggcacg 1801 accgcagtgg caaattgaag gcgttgccgt ggacaaatga gatgtctgtt tcagaggcca 1861 agacctgttg cgagaatcag aaggtgggca aagtgaggca atcgctaaat gaaattctgt 1921 tcagagcgct attggatatg cagaatacgt tcgacgtgtt tttggtacta gtgccgggtg 1981 ccgcgcgagg aaatccggaa aataattcaa agtgcttggc tgctctaatg gataagtatc 2041 gcgaaaagcg aaactctaat gctaaattca taatggtgag cctgcggcag cgtcaacgct 2101 ccatgatata ttccagcgga cgaaacgaga acttgttaga gttgtgcagc ctggataagc 2161 acacaccgcg tttgattaac gcatttgtcc gcaataagtt ctactagacg gtgagctgca 2221 ttgcgaatat cggacgaccc atttcatcgc acaactgcag gcacaaagca gttccatttg 2281 ttgaaggacg atggccatcg gttagttgcc atcggccatc tctctcgctt tcatagatgc 2341 ctggtcgttc ggtcctctca ctccattttc gaatagcttt tgtgtaacat attcataggc 2401 ccttggtgtg taatcgttgt agaaccaggc caccaactca atgctacatt catatttaca 2461 tactactaat tgtaatagtt gcatcccgga atccagaatt taaaattcct atcgggctag 2521 taagatatta tcgctcgttt tgtgtaatga aattgtgtat tagcatttgt aatttttact 2581 cgatttggtg tattcatttt gttaaaatta aaccgaatca actgaactga acttaatcta 2641 aattcaattt ggatttaaaa caatctcaat gaaatcgcaa gcgcaaacaa caacaaaaga 2701 accgacaaaa aaaaaaaaaa agaaaaacaa attgccttac aaacaaaaat gttagtaaaa 2761 ctttcatttt agtttagact ttttcaaaaa ttgaatactg gaactgaaac acaatttatg 2821 gcatttagat aaagttaaag ttaaatataa actaattgta tggcctatgt attgaatatt 2881 aatctaacgt aacatt