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LOCUS NM_001272269 3244 bp mRNA linear INV 26-DEC-2023 I (CG3588), mRNA. ACCESSION NM_001272269 VERSION NM_001272269.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3244) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3244) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3244) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3244) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3244) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3244) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3244) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3244) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3244) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3244) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3244) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3244) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3244) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3244) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3244) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3244) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3244) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3244) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3244) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3244) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3244) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3244) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3244) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3244 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3244 /gene="CG3588" /locus_tag="Dmel_CG3588" /gene_synonym="Dmel\CG3588; EG:100G7.6" /map="3C3-3C3" /db_xref="FLYBASE:FBgn0025643" /db_xref="GeneID:31278" CDS 210..2198 /gene="CG3588" /locus_tag="Dmel_CG3588" /gene_synonym="Dmel\CG3588; EG:100G7.6" /note="CG3588 gene product from transcript CG3588-RI; CG3588-PI" /codon_start=1 /product="uncharacterized protein, isoform I" /protein_id="NP_001259198.1" /db_xref="FLYBASE:FBpp0304699" /db_xref="GeneID:31278" /db_xref="FLYBASE:FBgn0025643" /translation="MRHAFVGLIVCWLAVCQPQAEAQFGGFGFQPQFAYQQPQFQQVY RQPQLQPQVYRQPQAYQQQPLVYYQQPQQPQQFRQRQGSVSKANTNAYERQVDFGNNL EYTQGVSNSRAVTKQNGQRVVTKSQAQTRDVDLGGLQLGNTLTRTRTNANGQVSQGIA DQFRIGNVGLGASLSPQNLQNGFGLQRGADGDLRLGLGLLNLDLDRNVANSNTLSQAQ VNANGKGARAGSNSNSQSNTQHFGGVTVTDTRANSNAFGKAQRGQTSATTGGFGGNAA TNGQSFGGPFQRVVRQNRRPKRKAQFVPFGYPRIGFGPVLSPLERPRRQFGRPGFGGP GFGGGEFEFGGGPGFGGPGFGGPGFGGPGFEQEFYEPERQQHKKKGNKNQAHGNANAQ GGPGFNQQASSNNHASPGNTGSSSISSNLAQDGSSGQVSSANTNTHQGQTANGGYQSD QNSQSQALNFRPGEQQASSANANTQHTQQGNRDTYDSNSGSTSTNNNKFGSATNTANT NSQVVRDGNRQDATSDANSQSIFQGNNGQGDASAQTNAQTSSQQGPGGFISNSASSSA TATAGNGQSANANSNANAGGGVGGAGAGANAGGFGGGADANSGANGGGGSAGANAGAN GGFGGFGGFGGFGGGGGGGANANSNAFGGYDGFGFFGR" ORIGIN 1 gcgctcattg cgtgcgctgt tttcgcaacg gcaacggaaa attagccacc cggttgcggt 61 gcaagcgaga tagcgagtgt acggcaacgg aatacggatt ttcagagtgc gggaaagtac 121 gaaaagtacg gaatacacga gaaccggagg caggagcaca aagaacggag aacggcgaac 181 ggcaaacgga gtggggatac gtagccagga tgcgacacgc atttgttgga ttaattgtgt 241 gctggctggc agtttgtcaa ccgcaagctg aggcgcagtt tggcggcttt ggattccagc 301 cacagttcgc ctaccagcag ccgcagttcc aacaggtata ccgccaaccg cagttgcaac 361 cgcaggtgta tcgccaacca caggcttacc aacaacaacc tttggtttat taccaacagc 421 cccagcagcc acagcagttc cgccagcgac agggatccgt ttccaaggcg aacacgaatg 481 cctacgagcg ccaggtggac tttggcaaca accttgagta cacccagggt gtgtccaatt 541 cacgagcggt taccaaacag aatggccagc gtgtggtgac caagagccag gcgcagacga 601 gggatgtcga tctgggtggt ctgcagttgg gcaacacact aaccaggacc aggacgaatg 661 ccaatggtca ggtgtcgcag ggcattgccg atcagttccg catcggaaac gtgggactcg 721 gagcctcgct gtcgccacag aatcttcaga atggcttcgg actgcagcgt ggcgccgatg 781 gagaccttcg cctgggcttg ggtctgctca acttggatct tgaccgcaat gtggccaatt 841 cgaacaccct gtcgcaggcg caggtaaatg ccaacggcaa gggtgcccgg gctggatcga 901 acagcaactc gcagtcgaac acccagcact ttggcggcgt caccgtcacc gatacgcgcg 961 ccaactcgaa tgcctttggc aaggcgcaaa ggggacagac ctcggccacc accggcggct 1021 tcggcggcaa tgcggccacc aatggccaga gtttcggtgg tcccttccag cgagttgtgc 1081 gccagaatag gcggcccaag cgaaaggctc agttcgtccc cttcgggtat cctcgaattg 1141 gtttcggccc cgtcttgagt cccttggaaa gaccgaggag gcagttcggc aggccgggtt 1201 tcggtggacc aggatttgga ggaggtgagt ttgaattcgg tggaggacct gggtttggag 1261 gacctggctt tggaggtcct ggttttggag gacctggctt cgagcaggag ttctacgagc 1321 ccgaacgtca gcaacacaag aagaagggta acaagaacca ggcgcatggc aatgcgaatg 1381 cccaaggtgg acctggattc aaccagcagg cctcgagcaa taaccacgcc agtcccggca 1441 acacgggcag cagttccatc agctccaatt tggcccagga cggcagcagt ggccaggtga 1501 gctcggccaa tacaaacacc catcagggcc aaacggcgaa cggtggctac cagagtgacc 1561 agaactcgca gagccaggcg ctcaacttcc ggccgggcga gcagcaggcc tccagcgcga 1621 atgcgaacac tcagcacacc cagcagggca atcgcgacac ctatgactcg aacagtggat 1681 ccacctccac gaacaacaac aagtttggct ccgcgacgaa cacggccaac acgaactcgc 1741 aggtggtcag ggatggcaat cgccaggatg cgaccagcga tgcgaacagt cagagcatct 1801 tccagggcaa caatggccag ggagacgcct ccgctcagac gaatgcgcag acgagcagcc 1861 agcaggggcc cggaggattt atcagcaact cggcctccag cagtgccacc gccaccgctg 1921 ggaatggaca gtcggccaat gcgaattcga acgcgaatgc gggcggaggt gtaggtggtg 1981 cgggcgcagg agccaatgct ggcggatttg gaggcggtgc tgatgccaat tccggtgcca 2041 atggcggtgg cggcagtgct ggagcgaatg ccggtgccaa tggtggcttc ggtggattcg 2101 gtggattcgg tggcttcggc ggcggcggtg gcggcggtgc caatgcgaac agcaatgcct 2161 ttggtggcta cgatggattc ggattcttcg gacgttagtt ttagacttta attttctaaa 2221 gactcaccca actttttttt gtcaccccac gaaaagcaca agaataaaaa tgcattttgt 2281 taatttaaat cccacaattg agcactgcaa atcgcgtagc gactgtctag cacactccaa 2341 ataacgatcg ttatcacttt cacatattac atatgtactt gtttcatcat cgttcggcat 2401 gtttttttta aaaaaaaaag cacattgata ttggcacaaa tgggtggtcc aactgacgag 2461 cacctctaat atttgccagt gtctattgaa atctctgcag ttcgccaacg tgcccagcaa 2521 aagattcgct tgcagcgctg gcagccacgc acccagaacg gaacatcatc caggggcacc 2581 tcgactaacg aaaactttga gtatgtgtac ttcaatcgca catcgtcgtc gtcccgcctc 2641 gaagatctgc agcctgacaa tgacgatagc tctggccggg atttggaagt ggctgggaca 2701 ccgctgaata cttcggtgga tgagttcgga ccgtacgata gtacgcagcg tcagggacgc 2761 accttcagcg tgatctatga ctggatcagc ggatttttca actcctgcgt ctcaccctgc 2821 accttggagg ccttccagaa gcagacctgc tgtgaaacct acgtggttga tccctcgtat 2881 ccaccaccac cgccaccgcc tccgccacca ccacctccac agacttgctg tgcaccggtg 2941 agaccaccct acgccccacc agttagacca ctgccaccac caccaccgcc gccgccaccc 3001 gtgccctacc cctatacacc gatctatccc aataagaaga cgcccgtggt ggtggtggcc 3061 acgcccatca actgctgcac agtctgcacc ttcacgtact acggaccacc gccctgtggg 3121 cggctctaca acaacagcag cagcggaagc gatggcaaga aggtcaccat ctatgtgcca 3181 ccaccctatt atgggcggta aaacaagtag acccaaccaa ccatagttac ctgctcatcg 3241 cacg