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Drosophila melanogaster hormone receptor 4, transcript variant J


LOCUS       NM_001272233           10003 bp    mRNA    linear   INV 26-DEC-2023
            (Hr4), mRNA.
ACCESSION   NM_001272233
VERSION     NM_001272233.2
DBLINK      BioProject: PRJNA164
            BioSample: SAMN02803731
KEYWORDS    RefSeq.
SOURCE      Drosophila melanogaster (fruit fly)
  ORGANISM  Drosophila melanogaster
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
REFERENCE   1  (bases 1 to 10003)
  AUTHORS   Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St
            Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K.,
            Strelets,V., Russo,S.M. and Gelbart,W.M.
  CONSRTM   FlyBase Consortium
  TITLE     Gene Model Annotations for Drosophila melanogaster: Impact of
            High-Throughput Data
  JOURNAL   G3 (Bethesda) 5 (8), 1721-1736 (2015)
   PUBMED   26109357
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10003)
  AUTHORS   Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St
            Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B.,
            Russo,S.M. and Gelbart,W.M.
  CONSRTM   FlyBase Consortium
  TITLE     Gene Model Annotations for Drosophila melanogaster: The
            Rule-Benders
  JOURNAL   G3 (Bethesda) 5 (8), 1737-1749 (2015)
   PUBMED   26109356
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 10003)
  AUTHORS   Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I.,
            Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R.,
            Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G.,
            Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N.,
            Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A.,
            Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E.
  TITLE     The Release 6 reference sequence of the Drosophila melanogaster
            genome
  JOURNAL   Genome Res 25 (3), 445-458 (2015)
   PUBMED   25589440
REFERENCE   4  (bases 1 to 10003)
  AUTHORS   Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M.,
            Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F.,
            Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E.
  TITLE     Sequence finishing and mapping of Drosophila melanogaster
            heterochromatin
  JOURNAL   Science 316 (5831), 1625-1628 (2007)
   PUBMED   17569867
REFERENCE   5  (bases 1 to 10003)
  AUTHORS   Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
  TITLE     The Release 5.1 annotation of Drosophila melanogaster
            heterochromatin
  JOURNAL   Science 316 (5831), 1586-1591 (2007)
   PUBMED   17569856
  REMARK    Erratum:[Science. 2007 Sep 7;317(5843):1325]
REFERENCE   6  (bases 1 to 10003)
  AUTHORS   Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D.,
            Ashburner,M. and Anxolabehere,D.
  TITLE     Combined evidence annotation of transposable elements in genome
            sequences
  JOURNAL   PLoS Comput Biol 1 (2), 166-175 (2005)
   PUBMED   16110336
REFERENCE   7  (bases 1 to 10003)
  AUTHORS   Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A.,
            Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A.,
            Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W.,
            Celniker,S.E., Rubin,G.M. and Karpen,G.H.
  TITLE     Heterochromatic sequences in a Drosophila whole-genome shotgun
            assembly
  JOURNAL   Genome Biol 3 (12), RESEARCH0085 (2002)
   PUBMED   12537574
REFERENCE   8  (bases 1 to 10003)
  AUTHORS   Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J.,
            Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E.,
            Rubin,G.M., Ashburner,M. and Celniker,S.E.
  TITLE     The transposable elements of the Drosophila melanogaster
            euchromatin: a genomics perspective
  JOURNAL   Genome Biol 3 (12), RESEARCH0084 (2002)
   PUBMED   12537573
REFERENCE   9  (bases 1 to 10003)
  AUTHORS   Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S.,
            Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E.,
            Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L.,
            Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D.,
            Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J.,
            Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M.,
            Rubin,G.M. and Lewis,S.E.
  TITLE     Annotation of the Drosophila melanogaster euchromatic genome: a
            systematic review
  JOURNAL   Genome Biol 3 (12), RESEARCH0083 (2002)
   PUBMED   12537572
REFERENCE   10 (bases 1 to 10003)
  AUTHORS   Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W.,
            Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E.,
            Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M.,
            Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S.,
            Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M.,
            Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W.,
            Gibbs,R.A. and Rubin,G.M.
  TITLE     Finishing a whole-genome shotgun: release 3 of the Drosophila
            melanogaster euchromatic genome sequence
  JOURNAL   Genome Biol 3 (12), RESEARCH0079 (2002)
   PUBMED   12537568
REFERENCE   11 (bases 1 to 10003)
  AUTHORS   Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D.,
            Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F.,
            George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N.,
            Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X.,
            Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D.,
            Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L.,
            Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D.,
            Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M.,
            Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S.,
            Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P.,
            Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A.,
            Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B.,
            Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I.,
            Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S.,
            Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C.,
            Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S.,
            Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z.,
            Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J.,
            Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J.,
            Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z.,
            Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C.,
            Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A.,
            Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C.,
            McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C.,
            Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L.,
            Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K.,
            Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S.,
            Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K.,
            Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I.,
            Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C.,
            Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R.,
            Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A.,
            Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT,
            Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F.,
            Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H.,
            Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O.,
            Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C.
  TITLE     The genome sequence of Drosophila melanogaster
  JOURNAL   Science 287 (5461), 2185-2195 (2000)
   PUBMED   10731132
REFERENCE   12 (bases 1 to 10003)
  AUTHORS   Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R.,
            Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R.,
            Smith,E., Yu,C. and Rubin,G.
  CONSRTM   Berkeley Drosophila Genome Project
  TITLE     Drosophila melanogaster release 4 sequence
  JOURNAL   Unpublished
REFERENCE   13 (bases 1 to 10003)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   14 (bases 1 to 10003)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2023) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   15 (bases 1 to 10003)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   16 (bases 1 to 10003)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (20-APR-2020) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   17 (bases 1 to 10003)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (22-APR-2019) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   18 (bases 1 to 10003)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAY-2018) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   19 (bases 1 to 10003)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (07-DEC-2016) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   20 (bases 1 to 10003)
  AUTHORS   Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R.,
            Park,S., Svirskas,R. and Karpen,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
            Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne
            Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA
  REMARK    Direct Submission
REFERENCE   21 (bases 1 to 10003)
  AUTHORS   Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S.,
            Svirskas,R. and Rubin,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
            Lawrence Berkeley National Laboratory, One Cyclotron Road, MS
            64-121, Berkeley, CA 94720, USA
  REMARK    Direct Submission
REFERENCE   22 (bases 1 to 10003)
  AUTHORS   Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
  CONSRTM   Drosophila Heterochromatin Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project,
            Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron
            Road, Mailstop 64-121, Berkeley, CA 94720, USA
REFERENCE   23 (bases 1 to 10003)
  AUTHORS   Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive,
            Rockville, MD 20850, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by FlyBase. This
            record is derived from an annotated genomic sequence (NC_004354).
            
            On Jul 15, 2014 this sequence version replaced NM_001272233.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider :: FlyBase
            Annotation Status   :: Full annotation
            Annotation Version  :: Release 6.54
            URL                 :: http://flybase.org
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10003
                     /organism="Drosophila melanogaster"
                     /mol_type="mRNA"
                     /db_xref="taxon:7227"
                     /chromosome="X"
                     /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2]
                     bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]"
     gene            1..10003
                     /gene="Hr4"
                     /locus_tag="Dmel_CG43934"
                     /old_locus_tag="Dmel_CG16902"
                     /old_locus_tag="Dmel_CG3600"
                     /old_locus_tag="Dmel_CG42527"
                     /gene_synonym="CG16902; CG3600; CG42527; CG43692; CG43934;
                     DHR4; Dmel\CG43934; EG:133E12.2; EG:BACH61I5.1; EP(X)1232;
                     EP1232; GRF; hr4; HR4; NR6A2; null"
                     /exception="dicistronic gene"
                     /note="Hormone receptor 4"
                     /map="2B16-2C1"
                     /db_xref="FLYBASE:FBgn0264562"
                     /db_xref="GeneID:31162"
     CDS             1550..7081
                     /gene="Hr4"
                     /locus_tag="Dmel_CG43934"
                     /old_locus_tag="Dmel_CG16902"
                     /old_locus_tag="Dmel_CG3600"
                     /old_locus_tag="Dmel_CG42527"
                     /gene_synonym="CG16902; CG3600; CG42527; CG43692; CG43934;
                     DHR4; Dmel\CG43934; EG:133E12.2; EG:BACH61I5.1; EP(X)1232;
                     EP1232; GRF; hr4; HR4; NR6A2; null"
                     /note="CG43934 gene product from transcript CG43934-RJ;
                     CG43934-PJ; Hr4-PJ"
                     /codon_start=1
                     /product="hormone receptor 4, isoform J"
                     /protein_id="NP_001259162.1"
                     /db_xref="FLYBASE:FBpp0305536"
                     /db_xref="GeneID:31162"
                     /db_xref="FLYBASE:FBgn0264562"
                     /translation="MNAQQPLILEPGSKASSVVAAAAELEAATTTAALATSSATEASA
                     ADSYPAVQQNGGHEEQRLNGNHGCRREQPDDRTDQPEQLDQQDEPEPVKDVANKLTII
                     KTPLNKTLLKKCNSNGSLQMPHANNGSSININNRNNTNNTNNNNSNNNNNAASNDVCD
                     SGLQSGNSNEQEPFANNDRHHHIYHHHHHHYHHHHGGDKSEASGDVASSSSADPNSQV
                     KDEPTAQDSQDNQAAGAAEAGGATAVAATCSPSKCNKCNSHNNNSNCNNNNNTISNNN
                     NNTSSNTNTNSNSNNNANNNNNNNNNNHYNNYNNYYKKKSRMPPICRIMTLSRGPYSE
                     LDKMSLFQDLKLKRRKIDSRCSSDGESIADTSTSSPDLLAPMSPKLCDSGSAGASLGA
                     SLPLPLALPLPMALPLPMSLPLPLTAASSAVTVSLAAVVAAVAETGGAGAGGAGTAVT
                     ASGAGPCVSTSSTTAAAATSSTSSLSSSSSSSSSTSSSTSSASPTAGASSTATCPASS
                     SSSSGNGSGGKSGSIKQEHTEIHSSSSAISAAAASTVMSPPPAEATRSSPATPEGGGP
                     AGDGSGATGGGNTSGGSTAGVAINEHQNNGNGSGGSSRASPDSLEEKPSTTTTTGRPT
                     LTPTNGVLSSASAGTGISTGSSAKLSEAGMSVIRSVKEERLLNVSSKMLVFHQQREQE
                     TKAVAAAAAAAAAGHVTVLVTPSRIKSEPPPPASPSSTSSTQRERERERDRERDRERE
                     RERDRDREREREQSISSSQQHLSRVSASPPTQLSHGSLGPNIVQTHHLHQQLTQPLTL
                     RKSSPPTEHLLSQSMQHLTQQQAIHLHHLLGQQQQQQQASHPQQQQQQQHSPHSLVRV
                     KKEPNVGQRHLSPHHQQQSPLLQHHQQQQQQQQQQQQHLHQQQQQQQHHQQQPQALAL
                     MHPASLALRNSNRDAAILFRVKSEVHQQVAAGLPHLMQSAGGAAAAAAAAVAAQRMVC
                     FSNARINGVKPEVIGGPLGNLRPVGVGGGNGSGSVQCPSPHPSSSSSSSQLSPQTPSQ
                     TPPRGTPTVIMGESCGVRTMVWGYEPPPPSAGQSHGQHPQQQQQSPHHQPQQQQQQQQ
                     QQSQQQQQQQQQQSLGQQQHCLSSPSAGSLTPSSSSGGGSVSGGGVGGPLTPSSVAPQ
                     NNEEAAQLLLSLGQTRIQDMRSRPHPFRTPHALNMERLWAGDYSQLPPGQLQALNLSA
                     QQQQWGSSNSTGLGGVGGGMGGRNLEAPHEPTDEDEQPLVCMICEDKATGLHYGIITC
                     EGCKGFFKRTVQNRRVYTCVADGTCEITKAQRNRCQYCRFKKCIEQGMVLQAVREDRM
                     PGGRNSGAVYNLYKVKYKKHKKTNQKQQQQAAQQQQQQAAAQQQHQQQQQHQQHQQHQ
                     QQQLHSPLHHHHHQGHQSHHAQQQHHPQLSPHHLLSPQQQQLAAAVAAAAQHQQQQQQ
                     QQQQQQQAKLMGGVVDMKPMFLGPALKPELLQAPPMHSPAQQQQQQQQQQQQQQASPH
                     LSLSSPHQQQQQQQGQHQNHHQQQGGGGGGAGGGAQLPPHLVNGTILKTALTNPSEIV
                     HLRHRLDSAVSSSKDRQISYEHALGMIQTLIDCDAMEDIATLPHFSEFLEDKSEISEK
                     LCNIGDSIVHKLVSWTKKLPFYLEIPVEIHTKLLTDKWHEILILTTAAYQALHGKRRG
                     EGGGSRHGSPASTPLSTPTGTPLSTPIPSPAQPLHKDDPEFVSEVNSHLSTLQTCLTT
                     LMGQPIAMEQLKLDVGHMVDKMTQITIMFRRIKLKMEEYVCLKVYILLNKAEVELESI
                     QERYVQVLRSYLQNSSPQNPQARLSELLSHIPEIQAAASLLLESKMFYVPFVLNSASI
                     R"
     misc_feature    5258..5527
                     /gene="Hr4"
                     /locus_tag="Dmel_CG43934"
                     /old_locus_tag="Dmel_CG16902"
                     /old_locus_tag="Dmel_CG3600"
                     /old_locus_tag="Dmel_CG42527"
                     /gene_synonym="CG16902; CG3600; CG42527; CG43692; CG43934;
                     DHR4; Dmel\CG43934; EG:133E12.2; EG:BACH61I5.1; EP(X)1232;
                     EP1232; GRF; hr4; HR4; NR6A2; null"
                     /note="DNA-binding domain of ecdysone-induced DHR4 orphan
                     nuclear receptor is composed of two C4-type zinc fingers;
                     Region: NR_DBD_DHR4_like; cd07168"
                     /db_xref="CDD:143542"
     misc_feature    order(5282..5284,5291..5293,5333..5335,5342..5344,
                     5390..5392,5408..5410,5438..5440,5447..5449)
                     /gene="Hr4"
                     /locus_tag="Dmel_CG43934"
                     /gene_synonym="CG16902; CG3600; CG42527; CG43692; CG43934;
                     DHR4; Dmel\CG43934; EG:133E12.2; EG:BACH61I5.1; EP(X)1232;
                     EP1232; GRF; hr4; HR4; NR6A2; null"
                     /note="zinc binding site [ion binding]; other site"
                     /db_xref="CDD:143542"
     misc_feature    order(5312..5320,5336..5341,5345..5347,5351..5353,
                     5360..5362,5369..5371,5429..5434,5441..5443,5450..5452,
                     5483..5485,5492..5494)
                     /gene="Hr4"
                     /locus_tag="Dmel_CG43934"
                     /gene_synonym="CG16902; CG3600; CG42527; CG43692; CG43934;
                     DHR4; Dmel\CG43934; EG:133E12.2; EG:BACH61I5.1; EP(X)1232;
                     EP1232; GRF; hr4; HR4; NR6A2; null"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:143542"
     misc_feature    6287..7066
                     /gene="Hr4"
                     /locus_tag="Dmel_CG43934"
                     /old_locus_tag="Dmel_CG16902"
                     /old_locus_tag="Dmel_CG3600"
                     /old_locus_tag="Dmel_CG42527"
                     /gene_synonym="CG16902; CG3600; CG42527; CG43692; CG43934;
                     DHR4; Dmel\CG43934; EG:133E12.2; EG:BACH61I5.1; EP(X)1232;
                     EP1232; GRF; hr4; HR4; NR6A2; null"
                     /note="The ligand binding domain of orphan nuclear
                     receptor Ecdysone-induced receptor DHR4; Region:
                     NR_LBD_DHR4_like; cd06953"
                     /db_xref="CDD:132751"
     misc_feature    order(6377..6382,6392..6394,6494..6496,6506..6508,
                     6515..6517,6713..6715,6782..6784)
                     /gene="Hr4"
                     /locus_tag="Dmel_CG43934"
                     /gene_synonym="CG16902; CG3600; CG42527; CG43692; CG43934;
                     DHR4; Dmel\CG43934; EG:133E12.2; EG:BACH61I5.1; EP(X)1232;
                     EP1232; GRF; hr4; HR4; NR6A2; null"
                     /note="putative ligand binding site [chemical binding];
                     other site"
                     /db_xref="CDD:132751"
     misc_feature    order(6407..6409,6416..6418,6428..6430,6443..6445,
                     6458..6463,6467..6472,6479..6484)
                     /gene="Hr4"
                     /locus_tag="Dmel_CG43934"
                     /gene_synonym="CG16902; CG3600; CG42527; CG43692; CG43934;
                     DHR4; Dmel\CG43934; EG:133E12.2; EG:BACH61I5.1; EP(X)1232;
                     EP1232; GRF; hr4; HR4; NR6A2; null"
                     /note="putative coactivator recognition site [active]"
                     /db_xref="CDD:132751"
ORIGIN      
        1 gtgtatccca cgagctagtc gcgcgcggaa agcaaacgct tcgaaaatca aacgatattt
       61 ccgttgtggg ttcccaagaa ataaaataat aacacaaaac gaaataacta tttttttacg
      121 ttttttttgt tgcctctcca ggattttgtt gaccatcgta gattggatat gtgaaacaaa
      181 ttttaagggc ctccactttc tctatctcgc cctagcagca aggtgcactg tgtgtgtgtg
      241 cgacaatttt acaagtgcaa catgaataaa tgcaaagaaa attttttttt taattgttga
      301 caacaagaat ttgcaagcat cttcaaagat ccaacagaaa attggcttgt ttttgttttg
      361 tgtgtgtgtg tacgtgtgcg tgcgtgcgtg tgtgtgtgcg gcgcaaatat aaaaaaaatg
      421 cataacgaca ccttggcact gacgctattt ttttaattct attttttatg tgtgtgttcc
      481 gttgcagttg acgtttaacc cccacccacc caaataaagc aaatctaact aaagagtcct
      541 gcaaaaaaat caacagctgc ttgatcttga agcctccata tcttgaaatc ctgcatcagc
      601 caacagcccc aaaacaaaac aaaacaaaac gaatgcaaat acactaatgt gaacaacaac
      661 taaattgcta gtgaaatgtt ttaagccaaa tgctgtgagt gtgtaacaaa aaaaaaaaaa
      721 aaaaaaaaaa aaaaagaaga gtgattcaaa gcaaccgcaa gcaatcaact tgtaacggta
      781 gtcggatact cgcttgcccg cggagcatgg atatcgcccc agttccgcca ccaccattat
      841 cgatatccgt atcgctttcg gctccaggat caacggtatt cgcaaacgct ggccactaga
      901 gaagcgtcag ccgaatgcct caaagatgac accgctgcaa cgggaccaat tgaaccacca
      961 acaatttgtg caccactatt tgcaaagtca acctgtcaat aacaaaattg acagctttga
     1021 tattaaacat atacgtaaaa cccaaaaccc gaccacaaac ccaaagtttc gaactgaaga
     1081 ccgtttcaag acaagcagca agagcaagat taccaacccg gagagcggaa atacccaact
     1141 ccattttcat ttgagtgaaa cgccagactt atccgcctca acttcgctgt tgccgtcagc
     1201 atttgttgca tcctccgccg ccttggtgaa tgtgacatgc caggcggagg aaggacaaag
     1261 ttcagcagga tcacactaca cagttcatag agggaatgac gcaggcattt cttttgcagc
     1321 gttggacttt cgttttataa gttttggcaa tggacgcaga cttcttctcc atctaatcga
     1381 accgagtgac ttcgcatcat gctgtagaag aagaagttga ctaacaaatg gttgttgtga
     1441 tcgaaagtgt cttttgagat gtgtttaaaa ctcggtgttt gcccagccaa aatggcccag
     1501 catcgttcgc ttgtccgtct ctacctgccc acctagaaga gctgcccaga tgaatgccca
     1561 gcagccgctg atcctggagc ctggatccaa ggccagcagt gttgttgcgg cagctgccga
     1621 gctagaggca gcaacaacca cggcagcgct ggccacgtcc tccgccacgg aggcttctgc
     1681 agcggacagc tatcctgccg tacagcagaa cggcggccac gaggagcagc ggctcaatgg
     1741 caaccacgga tgtcgccgcg agcagccgga tgatcggacg gaccagccgg agcagttgga
     1801 tcagcaggat gagcccgagc cagtcaagga cgtggccaac aagctgacca ttatcaagac
     1861 gccgttgaac aagactctgc tgaagaagtg caacagcaac gggagcctgc agatgccgca
     1921 cgccaacaat ggcagcagca tcaacatcaa taatcgcaac aacacaaaca acaccaacaa
     1981 caacaatagc aacaataaca acaatgcggc cagcaacgac gtctgcgatt ccggtttgca
     2041 aagcggaaat agcaatgaac aagaaccatt tgccaacaac gatcgccatc accacatcta
     2101 ccaccaccac caccatcact atcatcatca ccatggcggc gataagagcg aggcgagcgg
     2161 cgacgttgca tcctcgtcct ccgcggaccc caactcgcag gtcaaggacg agcccacagc
     2221 gcaggatagc caggacaatc aagcggccgg agctgcagag gctggaggag ctactgcggt
     2281 tgcagccacg tgcagcccca gcaagtgcaa caagtgcaac tcgcacaata acaacagcaa
     2341 ctgcaacaat aacaataata ccatcagcaa caacaacaat aatacaagca gtaataccaa
     2401 tacgaacagc aacagcaaca acaatgccaa caacaataat aataataaca ataataacca
     2461 ttacaacaac tacaataact attataagaa aaagtctcgt atgccgccca tttgccgaat
     2521 tatgacactg agccgtggcc cgtacagcga gctcgataaa atgagccttt ttcaagacct
     2581 caaactcaaa cggcgcaaaa tcgattcgcg atgcagcagt gacggcgagt ccatagcgga
     2641 cacgtccacc tcgtcgccgg acctgctggc gcccatgtcg ccgaagctct gcgacagcgg
     2701 ctcggcgggg gcgtcgctgg gggcatcgct gcccctgccg ctggccctgc ccctgccaat
     2761 ggccctgcca ctgcccatgt cgctgcccct gcccctcacg gcggcatctt cggcggtcac
     2821 cgtttcgctg gcagcggtcg tggccgcggt ggccgagacg ggtggcgcgg gcgcgggagg
     2881 agctgggaca gcagtaacag cgtcgggagc aggaccatgc gtctccacgt cgtctacgac
     2941 ggcagcggca gccacatcct cgacctcctc gctctcgtcc tcctcctctt cgtcatcctc
     3001 cacgtcctcc agcacttcct ccgcctcgcc gacagctgga gcctcctcca cggccacctg
     3061 ccccgccagc agcagcagca gcagtggaaa cggaagtggg ggcaaaagtg gtagcatcaa
     3121 gcaggagcac acggagatac actcgtcgag cagtgcgatt tcggcggccg ccgcctcaac
     3181 ggtgatgtca ccgccgcccg ctgaggcgac gagatccagt ccagccacgc ccgagggagg
     3241 cggaccagct ggcgacggaa gtggagcaac gggaggcgga aacacgagcg gcggatcaac
     3301 ggctggagtg gccattaatg aacaccaaaa caatggcaat ggcagcggcg ggagcagtcg
     3361 agcctctccc gattcgctgg aagagaagcc ctctaccaca acgaccacag gtcgtccaac
     3421 gctcacgccc acgaatgggg tgctgtcctc cgcctcggcg ggcacgggga tttccacagg
     3481 aagcagcgcc aagctgagcg aggctggtat gagtgtgata cggtccgtga aggaggagcg
     3541 cttgctcaac gtatccagca agatgctggt gttccatcag cagcgggagc aagagaccaa
     3601 agcagtggcg gctgcagcag cagcagcagc ggcgggccat gtgacggttc tagtgacgcc
     3661 atcgcgcatc aaatcggagc caccgccgcc ggcttcaccc tcctctacat ccagcacaca
     3721 aagggaaagg gaacgggaac gcgatcgaga gagggatcgc gaaagggaac gcgagcggga
     3781 ccgggaccgg gaacgggaac gggaacagtc catcagctcc tcgcagcagc acctaagtcg
     3841 ggtctccgcc agtccaccca ctcagctgtc ccacggcagc ctgggaccca acattgtgca
     3901 gacgcaccat cttcaccagc aactcacaca gccgctgacg ctgcgcaaga gcagcccgcc
     3961 cacagagcac ctgctcagtc agtccatgca acatctcaca cagcagcagg cgatccacct
     4021 gcatcaccta cttggccagc agcagcagca gcagcaggcg tcgcatcccc agcagcaaca
     4081 gcagcagcaa cactcgcccc actccctggt gcgggtgaaa aaggaaccga atgttggtca
     4141 gcggcactta tcgccgcatc accaacaaca gtcgccactc ctgcagcacc accaacagca
     4201 gcagcagcag caacaacaac agcaacagca tctgcatcag caacagcaac agcagcagca
     4261 tcaccagcag cagccccagg cactggccct gatgcatccg gcttccctgg cgctaaggaa
     4321 cagcaatcgg gatgcggcca ttctgtttcg ggtgaagagc gaagtgcacc agcaggtggc
     4381 cgccgggctg ccgcatctga tgcagtccgc tggtggggca gcggccgccg ccgcagcagc
     4441 tgtggccgct cagcgaatgg tatgcttcag caatgccagg atcaatggcg ttaagccgga
     4501 ggtgattgga ggaccgctgg gcaacctgcg gcccgtgggc gtcggtggcg gaaacggaag
     4561 tggctccgtg cagtgcccct cgccgcatcc atcctcctcg tcgtcatcct cgcagctgtc
     4621 gccgcagacg ccctcccaga cgccgccccg aggcacgccc accgtcataa tgggcgagag
     4681 ctgcggggtg cgcaccatgg tctggggcta cgagcctccg ccaccctcgg cgggccagtc
     4741 ccacggccag cacccgcaac agcaacagca gtcgccccac caccagccgc aacaacaaca
     4801 gcagcagcaa caacagcagt cgcagcagca acagcaacag cagcagcaac agtcgctggg
     4861 ccagcagcag cactgcctct cctcgccgtc ggcgggatcg ctgacgccct cctcttcgtc
     4921 cggcggtggt tcggtatctg gcggcggagt gggcggacca ctcacaccct cctcggtggc
     4981 gccgcagaat aacgaggagg ccgcccaact cctgctctcc ctgggacaga cacgcatcca
     5041 ggacatgaga tcacggccac accccttccg cacaccgcac gcccttaata tggagcggct
     5101 gtgggcggga gactactcgc aattgccgcc cggccagctg caggctctga atctcagtgc
     5161 ccaacagcag cagtggggca gcagcaactc cacgggtctt ggtggcgtag gcggcggcat
     5221 gggcggacgc aacctggagg cgccgcacga gccgaccgac gaggacgaac agccgctcgt
     5281 ttgcatgatc tgcgaggaca aggccaccgg cctgcactac ggcatcatca cctgcgaggg
     5341 gtgcaagggc ttcttcaagc ggacggtgca gaaccgacga gtctacacct gcgtggcgga
     5401 cggcacctgc gagataacca aagcacagcg caaccgttgt cagtattgtc gatttaagaa
     5461 gtgcatcgag cagggcatgg tgctgcaagc cgttcgcgag gatcgcatgc cgggcggtcg
     5521 caacagtggc gccgtctaca atttgtacaa ggtgaagtac aagaagcaca agaagaccaa
     5581 tcagaagcag cagcagcagg ccgcccagca gcagcagcag caggcggcgg cgcagcagca
     5641 gcaccagcaa cagcagcagc atcaacagca ccagcaacat cagcaacagc agttgcactc
     5701 gccgctccac catcaccacc accagggcca ccagtcgcac cacgcgcagc agcagcacca
     5761 cccacagctg tcgccgcacc acctgctgtc gccgcagcag cagcaacttg ccgccgcggt
     5821 ggcagcagct gcgcagcacc aacagcaaca gcaacaacag cagcaacagc agcagcaggc
     5881 caagctgatg ggcggcgtgg tggacatgaa gcccatgttc ctcggccccg ctttgaagcc
     5941 ggagttgctg caagcacccc ccatgcacag tccggcccag caacaacaac agcagcagca
     6001 gcagcagcag caacagcagg cctcgccgca tctctcgctt agctcaccgc accagcagca
     6061 gcagcagcag cagggacagc accaaaacca ccaccagcaa caaggtgggg gtggcggagg
     6121 agctggtgga ggagctcaac tgccgccgca cctggtgaac ggaacgatac tgaagacggc
     6181 cctaaccaat cccagcgaga ttgtacatct gcgccaccgc ctcgactcgg cggtcagttc
     6241 gtccaaggac cgacagatct cgtacgagca cgccttaggc atgatccaga cactgatcga
     6301 ctgcgacgcg atggaggaca tagccacact gccgcacttc agcgagttcc ttgaggacaa
     6361 gtcggagatt agcgagaaac tgtgcaacat cggcgattcc atagtccaca agctggtgtc
     6421 gtggacaaaa aagttgccct tctacctgga gatcccggtg gagatacata ccaaactact
     6481 gacggacaag tggcacgaga tccttatcct gaccacggcc gcctaccagg cgttgcatgg
     6541 caagcggcgt ggcgagggag gaggcagcag gcatggttcg ccggcgtcaa cgccactgag
     6601 cacgcccact ggtacgccgt tgagcacacc gataccctcg cccgcccagc cactgcacaa
     6661 ggacgacccg gagtttgtca gcgaggtgaa ctcgcacctg agcacactgc aaacctgctt
     6721 gaccacgcta atgggccagc cgatagcgat ggagcagctg aagctggacg tcgggcacat
     6781 ggtggacaag atgacccaga tcaccatcat gttccggcga atcaagctca agatggagga
     6841 gtacgtctgc ctgaaggttt acatactgct aaacaaagca gaagtggaac tggagagcat
     6901 ccaggagcgg tacgtccagg tgctgcgctc ctacctgcaa aactcctcgc cgcagaatcc
     6961 gcaggcgagg ctcagtgaac tgctctccca cataccagag atccaggctg cggctagcct
     7021 gctgctcgag agcaagatgt tctatgtgcc cttcgtgctc aactcggcga gcataaggta
     7081 gcagatgctt gagcacggac tgctgcccac cgccaaccat cagtcggcgc caccacctgg
     7141 tcctgatacg atcccggagc ggcagcagca acagcaacag gagcggcgtc gaagcaggca
     7201 gcagcagcac cagttgctgc gcaacctgcc caagatcaag atcgagatcg gttcccagcg
     7261 cgatccggag gaagaggagt cggagcaaga gctagagcag gagccggagc aagagcagga
     7321 tgtgcagtcc cgaccctcag ccgcatccac gtccattttg aagacttcac tgctgagcgg
     7381 agcggcggcg acgttggcca ccttgacggc ggcagccgag caaatagccc gctcctcggc
     7441 cagctgcgac actgccaggg attattccca aagcagcaac agcagcagca atagcaacgc
     7501 tgccacagga gcaacaggaa ctatggccag cggcaggaca ggcagcagca acagtttaga
     7561 agagagcaaa agacttgagc atcaacaaca acaacaacaa cagcagcaac aaccacaaca
     7621 gcatcagcag caacaatata catcaatact acacacggcc ttaatgtcac agcgttccat
     7681 gccaccagcg acatcagcta catcagcagc agcggcggtc acatcgacgc cgacaacggc
     7741 agcaacaaca tcgcctacgc ctgcgcatgt gctgaaaaca gcggtgacct tagccagtct
     7801 aagtgagata gccacagcac gtcagcagca gcaggagcag cagcagcaac agcagcagca
     7861 gcagcagcag caacaattgc tggcgatgca acagcaacag caacagctaa cgaaactgcc
     7921 cagaaggata atcaactttg gcagcaatca cactgccaac actgccacca aagcattggg
     7981 agcgggatca gaagcaggag caggagcagg agtgggcatg gccacagcaa cggcaacagc
     8041 aacagttgga cgcaatcgcc aactgggcct gagtcagggt caagtggtga atggtaagca
     8101 gaaagaattg tgagccttgt gtttgcgata acgtttgtgt acccctcgtt aacgctgcca
     8161 gtcaggacag cacgcctgct caatggcaac tgttgcggcc gattgcaggc gacagcagga
     8221 acaggggcca gcaggggcac caacactgcc ggcagcaaca cggtcaacat gcagacccag
     8281 accgacgatg agttgctgcc gctgttagcc atgctcccac aagacgctcc cacaacaaca
     8341 ggagcagcag caggagcagc agtatcatta tcattattag ccacagccac agccacaacc
     8401 acatcttcat catcatcatc atcatcatca ttatcatcat catcgacgat ttcattagca
     8461 acacgtgcag cagcagtaat gcagcagcag caacaatgga ctgccgtgtc gacgacgcca
     8521 gcaacaggag tgatgatgac gacgacgacg acacaatcac aatcacaagc aacattagca
     8581 ccacaacaac agcaactatc actgccacaa caaaagcaac aatttaatac gagaataaac
     8641 agaaaaacaa caattacaac agccaccaca acagcaccaa cagcaacaac agcaacaaca
     8701 acaacaacac gaaacagcaa catcaacttc aacagcaaca ataactatat gaataacaat
     8761 aatataaacg ccgccactgc cagagcctct gccttcgcct ccgcctctgc catggccacg
     8821 gccacgccca caggcacacc cactgccacg ggcccgcgcc agagaccggc cccgcaaccg
     8881 cccccgcccc cgcgcacgcc cacagccacc tcagcttctg ttactgtagt tgtgttcaaa
     8941 acaatgttac ctgatgactg aattatttta gaatcgtaca catagagcat gttttattat
     9001 gattaccact atgattacca cttacgattt acgattacga ttatgattac gattatgagt
     9061 atgtctggat atcattacct attaactatt cattagttat ggattatcga ttattactat
     9121 ttttactatt actattgcta catgcataat gtagagccta attgatctat cgtgtatttt
     9181 agtttgtcta attgttggat ccctgtacta tatcccacac acatacacac actctcaccc
     9241 atatttgatc ctcaccccca aacaatccat aagcacacac tcatacacac acacacacac
     9301 acacacacat tgccgttact aaggaagggt atgcgcatat gcgaagttga aacattttaa
     9361 tcatgtattt tttttttttg tgtttttgct gaacggagat gaaagttaag gaggtcgagc
     9421 aacagcaatt agaagtgtta attgagtagg attatgagta cgtagcgagt atgtaacgag
     9481 tatgtaatga ctaagtaaag tttacgtaga cacaatgcca cacacagcta tagcaagcat
     9541 ttaggatgcg tgcatatgtc agttatctat tttttttttt taaactaaaa tctatataaa
     9601 gtaacgagag aggaaggaag agcgaagcag ggcgggagat tcaaccacat aaagtataaa
     9661 tagtagagct tgagccaagt agctagttta gtgtacatcc gttttggggc agggaagtag
     9721 agcaatttgt tgacgagtcg gggtggtggg gtgagcggta acgaagatcg gtaacggaag
     9781 tggagacaaa gcggaaccgg aaacgggagc tggactgcca gatcggaatc acacatcaac
     9841 cattatgaga acttcgctcg caactcttgc agaattatac tgttagatcc tgttagttat
     9901 ccaacccaaa actcccaacc cacacacact atacctaagt taagaacgca taatcacata
     9961 ctacacataa attacgcata gtacatacaa aaaagatgaa gag