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LOCUS NM_001272204 3603 bp mRNA linear INV 26-DEC-2023 (Rilpl), transcript variant C, mRNA. ACCESSION NM_001272204 VERSION NM_001272204.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3603) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3603) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3603) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3603) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3603) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3603) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3603) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3603) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3603) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3603) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3603) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3603) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3603) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3603) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3603) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3603) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3603) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3603) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3603) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3603) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3603) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3603) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3603) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3603 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3603 /gene="Rilpl" /locus_tag="Dmel_CG11448" /gene_synonym="CG11448; Dmel\CG11448; EG:132E8.4; RILP" /note="Rab interacting lysosomal protein like" /map="2A1-2A1" /db_xref="FLYBASE:FBgn0024985" /db_xref="GeneID:31090" CDS 491..1951 /gene="Rilpl" /locus_tag="Dmel_CG11448" /gene_synonym="CG11448; Dmel\CG11448; EG:132E8.4; RILP" /note="CG11448 gene product from transcript CG11448-RC; CG11448-PC; Rilpl-PC" /codon_start=1 /product="Rab interacting lysosomal protein like, isoform C" /protein_id="NP_001259133.1" /db_xref="FLYBASE:FBpp0304571" /db_xref="GeneID:31090" /db_xref="FLYBASE:FBgn0024985" /translation="MPGFHLNEMGEMVLDAIDDIGVVDVYDLASDIGKEYERIMDRFG TDAVSGLMPKIINTLELLEALATKNERENATIQELRDKVAQLESEKLEKAEFRRRFDK ELELIEEQWRSETNELVDLVSSLQDENKRLVKQTQDLQSSSAQSSGLGASLTESIISM TNHELHSALSDTQVLQRLKEQIYKQRDELKHRERELQDKYSELEHLNIQAERLKASER DTRRRHKLMQAQVKTLCEERADFLAQLQDQSREINQLRKRLGLAEKENEDLVASYDDG QNDPNRPRYTTRELKELISERDELLTTIDTLNEQLAELKPPSQAKGKRQRHFSSSDDS DEDDDGHVADNDDDDDEEEAAAEANELEPPAAGETPPGHDAPVQGPLPYEPDDAPWKK SSESGIRKFFRKLFSDPSDGSNTFPKRSLATLSKMALSATPGSVSASAAANLGNSLYL TLSLAIHLLRLSCTYIVYTLDCCALIILSCYAILFT" misc_feature 563..1051 /gene="Rilpl" /locus_tag="Dmel_CG11448" /gene_synonym="CG11448; Dmel\CG11448; EG:132E8.4; RILP" /note="JNK_SAPK-associated protein-1; Region: Jnk-SapK_ap_N; pfam09744" /db_xref="CDD:462875" misc_feature <680..>1435 /gene="Rilpl" /locus_tag="Dmel_CG11448" /gene_synonym="CG11448; Dmel\CG11448; EG:132E8.4; RILP" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:274008" ORIGIN 1 cagttattcg ttactcatca gttccagttc ggttcagcaa aaattgtgca aataaattgc 61 ggaaagtcgg attgtttatg tgggaatcgg cagcgaaaag cgactcggcg gcagtaacaa 121 ctagagtgaa tgaagtgagc actgccactc ccacgcacac tactgtgcag tctgtgtgcg 181 ccaactgtga attgcgaagt gcgaattccg tacttcggat tgcggattcc ccccctccct 241 taaagcactt ggaaaaccaa cacctggcgc acgtacacgc acacgcacac ttgtcctgct 301 agcgaaagaa aaatccctgt cagctggtgc agcgattccc gaagcaactc cgaggagcag 361 gacaccgtgg aaagaggcga caactgaagc tggtcttcag tgaacacaga gtccagtgag 421 caagtgtgag caagtaaaca agtgatacag cgcttggcag gagtcacaga ttatctgagc 481 gaccacctgg atgcccggct ttcacctcaa tgagatgggt gaaatggtcc tggacgccat 541 cgacgacatc ggcgtggtcg atgtgtacga cttggcctcc gacattggca aggagtacga 601 gcggatcatg gaccgcttcg gcacggacgc cgtcagcggg ctgatgccca agatcatcaa 661 caccctggag ctgttggagg cgctggccac gaagaacgag cgcgagaacg ccaccatcca 721 ggagctgcgc gataaggtgg cccagctgga gagcgagaag ctggagaagg ccgagttccg 781 gcggcggttc gacaaggagc tggagctgat cgaagagcag tggcgcagcg agaccaacga 841 gctggtcgat ctcgtctcct cgctgcaaga cgagaacaag cggctggtaa agcagactca 901 ggatctgcag tcatcgtccg cccagagctc cggcctgggg gccagtctca ccgagagcat 961 tatcagcatg accaaccacg agctgcacag cgctctttcg gatactcaag tgctgcaacg 1021 gctgaaggag cagatataca agcagcgcga cgagttgaag caccgcgagc gtgagctgca 1081 ggacaagtac agcgagctgg agcacctcaa tatccaggcg gagcgtctga aggcatcaga 1141 gcgagatacc cggcgccgcc acaagctgat gcaggcccaa gtgaagacgc tgtgcgagga 1201 gcgcgccgac tttcttgccc agctgcagga ccagagccgg gagatcaacc aactgcgcaa 1261 gcgattgggc ctggccgaaa aggagaatga ggatttggtg gcctcgtacg acgatggcca 1321 gaacgatccc aaccggccgc ggtacaccac gcgcgagctg aaagagttga ttagcgagcg 1381 cgatgagctg ctgaccacca tcgacaccct caacgagcag ctggcggagc tgaagccacc 1441 aagccaggcg aagggcaagc ggcagcgtca cttctccagc tccgacgata gcgatgagga 1501 cgacgatggt cacgtggcgg acaacgatga tgacgacgac gaggaggagg cggctgccga 1561 ggcgaacgag ctggagccac cagcggccgg agaaacgcca cctggacacg atgcgcccgt 1621 gcagggccct ttgccctacg agccggacga tgcgccctgg aagaagagct ccgagtcggg 1681 aatacgcaaa ttcttccgga agctgttctc ggacccgtcg gacggcagca acacgttccc 1741 gaaacgttcc ttggccacgc tctccaagat ggcgctgtcg gccacgcccg gttccgtttc 1801 cgcctccgca gcggcgaatt taggcaacag cctgtatctg accctgtccc tcgccattca 1861 cctgctccgc ctgagctgta catacatagt ttacacactc gattgctgtg ccctcataat 1921 tctaagttgt tatgcaattt tgtttacgta atacgcgttt tattcgtaac tcgtaacccc 1981 taactgtact ggatatattt aatacgaatc cactttgtat ttttcgtacc ttcgatttat 2041 tctaacttga ttaacgacta ccacataaga ctccaaacat accacagccc ccacatgtgc 2101 acgtgtttca aaaatcaaga tcgagaacga aaacgagaac gaaaacgata tcgagattgt 2161 gcaaagattg ccgagtgagt ttttaatgaa tttagacaaa aacaagctta gaaagacaaa 2221 cagtcctccc aggtgcagat gcagagaaaa cgattcggtg agatgaggag acgagacgag 2281 gaggactctg gttctgggac cccagatttt agaaagtcta ggtagaacgg gaagattttg 2341 cttcaattat ccgtagtgta actgtcccta agacccctgc atctatctag atcttcggct 2401 atcgccagcc cgtatgagta ttttagcact ctcatagcag ttgccccaag cggccttata 2461 aatatattac aaatttatca aaatacgcaa accttagagc gaaagaaacc taaaagtata 2521 tataattgat atataattag caaacgttac aaccttagcg cattgtttgt tgacttgaat 2581 tgaactaact aacgaaacca atctcagcat agtagattcc attgatagca ttcgattgca 2641 caaagatgcc aaaaagcgaa aatctccgcg ttaccccatt gccggccggc cagtctaaat 2701 caaggaatgt tttagccaag agttttacca tagacttagc cactgaccag ctcgaattgt 2761 tgttaccgca cccagacgac ttcgcccaga gcccccactc cacttgaagc ccagtgattt 2821 cgaggagatc tcagtccgat cctcgttcat agctagtatc catgagagag acgcccatgt 2881 agtgcaatta ccaatatggt gtcacttccc gctccccttc cactcacaag cacaaagcga 2941 ggaaactccg tttacatatc agctccatcg ctatcgtcga tgcgaacgtg ccaaagacta 3001 atggtcagac cctatgcccc cattattcgc aactcccccc cactacccac accacgcacc 3061 gaacacccag cccacaacac ccgacttacc aatctcaatt aacccatctc gtttcgaaca 3121 caacaaagag tggcaactga acttttataa aattgaacac gagcgcgcaa tggcatcgat 3181 atgaaaaagt ggactaacgt tgagtgggtg aagaccacga aaagaagatg gagagaaatt 3241 gagtatttgg tgaattaatg ttaactaaat ttatatacac atatacacat gcattataca 3301 taatatactt tactatatac tatgtaatac cgtattatat ggaactatga ctaaccaaaa 3361 aggcaacaag gcaacaatta tacaaaattc aaagcgtacc agggtggcac ttggaccatg 3421 gactgcagga gcgaccagag cgatagcgag catcggatcg gatcggattg gatcgcatca 3481 tggtgaaccg catcagaggg cgacgcctcc gcatccgggt atcatctgct cacccctgta 3541 cgtacatcaa atttatgagt ggcttccttt gagcgaccac caaaataaac ttatgaaccg 3601 tgg