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LOCUS NM_001272203 3799 bp mRNA linear INV 26-DEC-2023 (Rilpl), transcript variant B, mRNA. ACCESSION NM_001272203 VERSION NM_001272203.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3799) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3799) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3799) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3799) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3799) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3799) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3799) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3799) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3799) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3799) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3799) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3799) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3799) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3799) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3799) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3799) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3799) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3799) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3799) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3799) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3799) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3799) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3799) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3799 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3799 /gene="Rilpl" /locus_tag="Dmel_CG11448" /gene_synonym="CG11448; Dmel\CG11448; EG:132E8.4; RILP" /note="Rab interacting lysosomal protein like" /map="2A1-2A1" /db_xref="FLYBASE:FBgn0024985" /db_xref="GeneID:31090" CDS 491..1837 /gene="Rilpl" /locus_tag="Dmel_CG11448" /gene_synonym="CG11448; Dmel\CG11448; EG:132E8.4; RILP" /note="CG11448 gene product from transcript CG11448-RB; CG11448-PB; Rilpl-PB" /codon_start=1 /product="Rab interacting lysosomal protein like, isoform B" /protein_id="NP_001259132.1" /db_xref="FLYBASE:FBpp0304570" /db_xref="GeneID:31090" /db_xref="FLYBASE:FBgn0024985" /translation="MPGFHLNEMGEMVLDAIDDIGVVDVYDLASDIGKEYERIMDRFG TDAVSGLMPKIINTLELLEALATKNERENATIQELRDKVAQLESEKLEKAEFRRRFDK ELELIEEQWRSETNELVDLVSSLQDENKRLVKQTQDLQSSSAQSSGLGASLTESIISM TNHELHSALSDTQVLQRLKEQIYKQRDELKHRERELQDKYSELEHLNIQAERLKASER DTRRRHKLMQAQVKTLCEERADFLAQLQDQSREINQLRKRLGLAEKENEDLVASYDDG QNDPNRPRYTTRELKELISERDELLTTIDTLNEQLAELKPPSQAKGKRQRHFSSSDDS DEDDDGHVADNDDDDDEEEAAAEANELEPPAAGETASLFRPPGHDAPVQGPLPYEPDD APWKKSSESGIRKFFRKLFSDPSDGSNTFPKRSLATLSKMALSATPGSVSASAAAK" misc_feature 563..1051 /gene="Rilpl" /locus_tag="Dmel_CG11448" /gene_synonym="CG11448; Dmel\CG11448; EG:132E8.4; RILP" /note="JNK_SAPK-associated protein-1; Region: Jnk-SapK_ap_N; pfam09744" /db_xref="CDD:462875" misc_feature <680..>1435 /gene="Rilpl" /locus_tag="Dmel_CG11448" /gene_synonym="CG11448; Dmel\CG11448; EG:132E8.4; RILP" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:274008" ORIGIN 1 cagttattcg ttactcatca gttccagttc ggttcagcaa aaattgtgca aataaattgc 61 ggaaagtcgg attgtttatg tgggaatcgg cagcgaaaag cgactcggcg gcagtaacaa 121 ctagagtgaa tgaagtgagc actgccactc ccacgcacac tactgtgcag tctgtgtgcg 181 ccaactgtga attgcgaagt gcgaattccg tacttcggat tgcggattcc ccccctccct 241 taaagcactt ggaaaaccaa cacctggcgc acgtacacgc acacgcacac ttgtcctgct 301 agcgaaagaa aaatccctgt cagctggtgc agcgattccc gaagcaactc cgaggagcag 361 gacaccgtgg aaagaggcga caactgaagc tggtcttcag tgaacacaga gtccagtgag 421 caagtgtgag caagtaaaca agtgatacag cgcttggcag gagtcacaga ttatctgagc 481 gaccacctgg atgcccggct ttcacctcaa tgagatgggt gaaatggtcc tggacgccat 541 cgacgacatc ggcgtggtcg atgtgtacga cttggcctcc gacattggca aggagtacga 601 gcggatcatg gaccgcttcg gcacggacgc cgtcagcggg ctgatgccca agatcatcaa 661 caccctggag ctgttggagg cgctggccac gaagaacgag cgcgagaacg ccaccatcca 721 ggagctgcgc gataaggtgg cccagctgga gagcgagaag ctggagaagg ccgagttccg 781 gcggcggttc gacaaggagc tggagctgat cgaagagcag tggcgcagcg agaccaacga 841 gctggtcgat ctcgtctcct cgctgcaaga cgagaacaag cggctggtaa agcagactca 901 ggatctgcag tcatcgtccg cccagagctc cggcctgggg gccagtctca ccgagagcat 961 tatcagcatg accaaccacg agctgcacag cgctctttcg gatactcaag tgctgcaacg 1021 gctgaaggag cagatataca agcagcgcga cgagttgaag caccgcgagc gtgagctgca 1081 ggacaagtac agcgagctgg agcacctcaa tatccaggcg gagcgtctga aggcatcaga 1141 gcgagatacc cggcgccgcc acaagctgat gcaggcccaa gtgaagacgc tgtgcgagga 1201 gcgcgccgac tttcttgccc agctgcagga ccagagccgg gagatcaacc aactgcgcaa 1261 gcgattgggc ctggccgaaa aggagaatga ggatttggtg gcctcgtacg acgatggcca 1321 gaacgatccc aaccggccgc ggtacaccac gcgcgagctg aaagagttga ttagcgagcg 1381 cgatgagctg ctgaccacca tcgacaccct caacgagcag ctggcggagc tgaagccacc 1441 aagccaggcg aagggcaagc ggcagcgtca cttctccagc tccgacgata gcgatgagga 1501 cgacgatggt cacgtggcgg acaacgatga tgacgacgac gaggaggagg cggctgccga 1561 ggcgaacgag ctggagccac cagcggccgg agaaactgca tcgcttttca ggccacctgg 1621 acacgatgcg cccgtgcagg gccctttgcc ctacgagccg gacgatgcgc cctggaagaa 1681 gagctccgag tcgggaatac gcaaattctt ccggaagctg ttctcggacc cgtcggacgg 1741 cagcaacacg ttcccgaaac gttccttggc cacgctctcc aagatggcgc tgtcggccac 1801 gcccggttcc gtttccgcct ccgcagcggc gaagtaagcg ccccttaaag catccgagtt 1861 ggcgtgcatt tcacttttcg tttgttttct gtttttccgt ttccgttcca ttccgttccg 1921 ttccgtttgc actgcccccc gcacccctgc atcttgcatc ctaatttatt atttattttt 1981 tacttttacg tcttacgatt acgtttacat ttagtttagg caacagcctg tatctgaccc 2041 tgtccctcgc cattcacctg ctccgcctga gctgtacata catagtttac acactcgatt 2101 gctgtgccct cataattcta agttgttatg caattttgtt tacgtaatac gcgttttatt 2161 cgtaactcgt aacccctaac tgtactggat atatttaata cgaatccact ttgtattttt 2221 cgtaccttcg atttattcta acttgattaa cgactaccac ataagactcc aaacatacca 2281 cagcccccac atgtgcacgt gtttcaaaaa tcaagatcga gaacgaaaac gagaacgaaa 2341 acgatatcga gattgtgcaa agattgccga gtgagttttt aatgaattta gacaaaaaca 2401 agcttagaaa gacaaacagt cctcccaggt gcagatgcag agaaaacgat tcggtgagat 2461 gaggagacga gacgaggagg actctggttc tgggacccca gattttagaa agtctaggta 2521 gaacgggaag attttgcttc aattatccgt agtgtaactg tccctaagac ccctgcatct 2581 atctagatct tcggctatcg ccagcccgta tgagtatttt agcactctca tagcagttgc 2641 cccaagcggc cttataaata tattacaaat ttatcaaaat acgcaaacct tagagcgaaa 2701 gaaacctaaa agtatatata attgatatat aattagcaaa cgttacaacc ttagcgcatt 2761 gtttgttgac ttgaattgaa ctaactaacg aaaccaatct cagcatagta gattccattg 2821 atagcattcg attgcacaaa gatgccaaaa agcgaaaatc tccgcgttac cccattgccg 2881 gccggccagt ctaaatcaag gaatgtttta gccaagagtt ttaccataga cttagccact 2941 gaccagctcg aattgttgtt accgcaccca gacgacttcg cccagagccc ccactccact 3001 tgaagcccag tgatttcgag gagatctcag tccgatcctc gttcatagct agtatccatg 3061 agagagacgc ccatgtagtg caattaccaa tatggtgtca cttcccgctc cccttccact 3121 cacaagcaca aagcgaggaa actccgttta catatcagct ccatcgctat cgtcgatgcg 3181 aacgtgccaa agactaatgg tcagacccta tgcccccatt attcgcaact cccccccact 3241 acccacacca cgcaccgaac acccagccca caacacccga cttaccaatc tcaattaacc 3301 catctcgttt cgaacacaac aaagagtggc aactgaactt ttataaaatt gaacacgagc 3361 gcgcaatggc atcgatatga aaaagtggac taacgttgag tgggtgaaga ccacgaaaag 3421 aagatggaga gaaattgagt atttggtgaa ttaatgttaa ctaaatttat atacacatat 3481 acacatgcat tatacataat atactttact atatactatg taataccgta ttatatggaa 3541 ctatgactaa ccaaaaaggc aacaaggcaa caattataca aaattcaaag cgtaccaggg 3601 tggcacttgg accatggact gcaggagcga ccagagcgat agcgagcatc ggatcggatc 3661 ggattggatc gcatcatggt gaaccgcatc agagggcgac gcctccgcat ccgggtatca 3721 tctgctcacc cctgtacgta catcaaattt atgagtggct tcctttgagc gaccaccaaa 3781 ataaacttat gaaccgtgg