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LOCUS NM_001272202 3620 bp mRNA linear INV 26-DEC-2023 B (CG12773), mRNA. ACCESSION NM_001272202 VERSION NM_001272202.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3620) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3620) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3620) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3620) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3620) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3620) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3620) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3620) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3620) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3620) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3620) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3620) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3620) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3620) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3620) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3620) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3620) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3620) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3620) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3620) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3620) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3620) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3620) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3620 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3620 /gene="CG12773" /locus_tag="Dmel_CG12773" /gene_synonym="Dmel\CG12773; EG:8D8.3" /map="1F4-1F4" /db_xref="FLYBASE:FBgn0024365" /db_xref="GeneID:31082" CDS 494..2629 /gene="CG12773" /locus_tag="Dmel_CG12773" /gene_synonym="Dmel\CG12773; EG:8D8.3" /note="CG12773 gene product from transcript CG12773-RB; CG12773-PB" /codon_start=1 /product="uncharacterized protein, isoform B" /protein_id="NP_001259131.1" /db_xref="FLYBASE:FBpp0304566" /db_xref="GeneID:31082" /db_xref="FLYBASE:FBgn0024365" /translation="MTNSSEGNGNGGRRTVDWQRFGLGGDEDGDVAVTSFRQRTNNNT GGFVDLGNEYTYAAGGHHASGANEIFAGEQGDKPWRSNFFISQPVLFGTWDGVFTSCL INVFGVIVFLRSGWIVAQAGILNAVLIIFCTVVIALVSVLSAIGICERCRVESGGVYF LIAHTLGSRFGGALGLLYCFGQAVGCALNVMGFGESMAGLVGLEGSKWAIRGFATAAV LLLGCINVAGVKWVIKLQFILLMILLISALDFMVGSFTSEASGGFNGWASGNFVENLW PKYDDGYSWFRVFGVFFPTVTGVLSGINMSGDLRAPSTDIPNGTLAAFGTSTFLYLVF VLFLGATCQRSFLYTDYMISVKVSAVHFLLLAGIYVSSMSSCLGAMYGTPRVLQSIAK ESVIPGIDILGKGRGPNKVPLYAMAIVALVTVTFIIVGDINFLAPIVTMPFLLTYACI DYAYFALAQTFDIQEQREERFRIQASSPSYETRRYGSVSDTGNDLDLLFPDRVRHKNL QSPQNSPLHQTVPLEFDNEGPSTSNQAQSSERRTGHEADTTLAVEQAVAQAGVEQDQG DEAEPIAPIRPPIHSKTKNWYSGYCNRWASLLGAFTKLLVMLLVNWYYALTCFLVVFV VWFYVGTANPAVKPGLTAEFNFFAWLKSVIFRCFGKRMNEYEQIVVTPSCPGVDLSPT QLNEQNEDFRPRPNYHHSSVIEGRLIDDI" misc_feature 596..>1858 /gene="CG12773" /locus_tag="Dmel_CG12773" /gene_synonym="Dmel\CG12773; EG:8D8.3" /note="Amino acid permease; Region: AA_permease_2; cl45918" /db_xref="CDD:459263" ORIGIN 1 ctatcgtcta acgcatatcg cagcccaccg aaaagtcatc gatgacgact tcttgtagtt 61 taccaataag caagtgtttt tatttagctt tttgagcgtt tattgagtgc ggttacagtt 121 actcaagtgc gaccaagacg atgcccgccg tttcccgctt cggtcgccag tgactcgaat 181 ccagcgcctg cagcacctcc atcggatctg cgatcttcag aggattctcc actggctgcc 241 tgcgtggatg tgctcgcact tggacgtttg gatgtttggg tgtagcagtg ggagcgcaac 301 gccaagaaat agcaatcagt taattgccgc gattacgccc gagtagtcgt cagataaccc 361 gcgagaacag cacaacgcaa aaactgctca actccacggg agcagcagca acaacaaggc 421 cagcaaacaa ctgccaaaag cggtacggga aaagcggggt ggagcggagt gtgcggtgcg 481 aagcggagcg gagatgacta atagctctga gggcaatggc aacggcggcc gacgcactgt 541 cgactggcag agatttggac ttggcggcga cgaggacggg gatgtggcgg tgaccagctt 601 tcgccagcgg accaacaaca acaccggcgg atttgtggat ttaggtaacg agtacacgta 661 cgcggctggt ggccaccatg cgtccggggc caacgagatc tttgcgggcg agcagggcga 721 caagccgtgg cgctcgaact tcttcatctc ccagcccgtg ctattcggca cctgggacgg 781 agtgttcacc tcctgcctaa tcaacgtgtt tggagtgatc gtgttcctgc gatccggatg 841 gatcgtcgca caggcaggca ttctgaacgc ggtgctgatc atcttttgca cggtggtcat 901 agctctcgtc agcgtcctct cggcaatcgg tatctgcgag cggtgccgtg tggaaagcgg 961 tggcgtgtac tttctcatag cccacacgct tggttcccga ttcggaggcg ccttgggttt 1021 gctctactgc tttggccagg cggtgggatg cgcccttaac gtaatgggat ttggcgaatc 1081 aatggctgga ctagtgggac tcgagggcag caagtgggcc atccgcgggt tcgctacggc 1141 agcggtgctc ctgttgggct gcatcaacgt ggccggcgtc aagtgggtca tcaagcttca 1201 gtttatactg ctcatgatac tgctgatctc ggcgctggac ttcatggtgg gcagcttcac 1261 tagtgaggcc agtggcggct ttaatggctg ggcgagcgga aacttcgtgg agaacctatg 1321 gccaaagtac gacgacggct actcctggtt ccgtgtgttc ggcgtcttct ttcccaccgt 1381 caccggagtg ctgtcgggca ttaacatgag cggcgacttg cgcgcgccgt ccacggacat 1441 tcccaatggc accctggccg cctttggcac ctccacgttc ctgtacttgg tgttcgtcct 1501 gtttttgggg gccacctgcc aacgaagctt cctgtatact gactacatga tctctgtcaa 1561 ggtgtctgcc gtgcatttcc tgctgttggc cggcatttat gtgtccagca tgtcctcctg 1621 cctgggcgcc atgtacggca ctccgcgcgt ccttcagagc atcgccaaag agagcgtcat 1681 tccgggcatc gatatcctgg gaaagggtcg tggtcccaac aaagtgcctt tatacgcaat 1741 ggccatcgtg gccctagtca ctgtcacctt cattatcgtg ggagacatca acttcttggc 1801 gccgatcgtg accatgccct tcctgctcac atatgcctgt atcgactacg cctactttgc 1861 gctggcccag accttcgaca ttcaggagca gcgcgaggag cgtttccgca tccaggcgtc 1921 gagtcccagc tacgagacgc gccgttacgg cagtgtttcg gacacgggca acgacctgga 1981 cctcctgttc cctgatcggg tgcgccacaa gaacctgcag agtccgcaga actcaccgct 2041 gcaccaaaca gtgcccctgg agtttgacaa cgagggtccc agcacctcca accaggccca 2101 gtcttcggaa cggagaacgg ggcacgaggc ggacaccaca ctggccgtgg agcaggcagt 2161 cgcgcaggcc ggcgtcgaac aggaccaggg cgacgaggcc gaaccgatag ccccgatccg 2221 tccgcccatc cactccaaga cgaaaaactg gtactccggc tactgtaatc gctgggcctc 2281 tctgctgggg gccttcacta aactgctggt tatgctgcta gtcaactggt actacgccct 2341 cacctgcttc ttggtggtgt tcgtcgtatg gttctatgtg ggcacagcca atccggccgt 2401 gaagccgggt ctcactgcgg agtttaactt cttcgcctgg ctgaagagcg tcatattccg 2461 gtgcttcggc aaacggatga acgagtacga gcagatagtc gtgacaccct cgtgcccagg 2521 cgttgatctc tcacccacgc agctcaacga gcagaacgag gacttccgtc cgcggcccaa 2581 ctaccaccac tcgtccgtta tcgagggtcg cctcatagat gacatctaga ccgagtccag 2641 ggtctagagc acaggttcac ctgtatgcgg gccgggcaac ggggcaggcg gcgtggctgt 2701 ggaaagcaat agtcgagtgc atttctctac cgctaagcag tactacgttt aactaaagtg 2761 aagtagagcc ggcgaggcag ccgaactaaa cttaacccta tgtgtgtttg taaatctgta 2821 cgaatgtatt tgatgtatag ttaggatagc gacagctgag gtcacgatgg tagtattcca 2881 aactcggtct tagttcgttt tgctttaaca aaatttggag tctgtgacgc attttaactg 2941 ggactctccc acgatgtagt gcttagataa gaaaatgttg atagtgtatt gatttttagc 3001 tttttactag ttgttaaaac gttcggaggt cagccaaatc agagcacatt tcagttgcgg 3061 aggctccatt ctgaccacag ctgtccagtc cagcgtttac caccgtgtcc atccccgtgt 3121 ccacgcctcg cccacacgca cacacccaac ttcagaggac actcacacaa caactcagag 3181 cactttctaa ttattaattc taatgtatta attcttaagc ttcgcattct ttcgatgtgt 3241 tccttgctct cgtagttctt caacgattac tccttagttg agagcgaata agttgttgct 3301 aaatggatat gtttccagtg ttccgcacac aaaacagaac gcatttcgag gagacatatg 3361 tgatactgag ataataagtg aaaccaaaac cagaaatcaa actcgatgat ttggcgcctt 3421 gcatttaaga cgacaacaca cacagcacac agagcacaat gaaattgtta cagaacacaa 3481 gaatgagcca cataacacaa acaacaccta agctaagcta taatcctgta ttaccatgtc 3541 ggtggacaat aacagtccta attgataata tatataaacc tgtacccgcg tacactcact 3601 cggcatacga tatcagcaat