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LOCUS NM_001272187 3355 bp mRNA linear INV 26-DEC-2023 transcript variant M, mRNA. ACCESSION NM_001272187 VERSION NM_001272187.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3355) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3355) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3355) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3355) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3355) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3355) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3355) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3355) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3355) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3355) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3355) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3355) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3355) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3355) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3355) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3355) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3355) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3355) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3355) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3355) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3355) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3355) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3355) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001272187.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3355 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3355 /gene="su(w[a])" /locus_tag="Dmel_CG3019" /gene_synonym="CG3019; Dmel\CG3019; DmSWAP; EG:BACR7A4.10; su(w); su(wa); Su(w[a]); su(w[a])-1; su(w[a])-2; su-w; su[wa]; SWAP" /note="suppressor of white-apricot" /map="1E1-1E1" /db_xref="FLYBASE:FBgn0003638" /db_xref="GeneID:31054" CDS 216..698 /gene="su(w[a])" /locus_tag="Dmel_CG3019" /gene_synonym="CG3019; Dmel\CG3019; DmSWAP; EG:BACR7A4.10; su(w); su(wa); Su(w[a]); su(w[a])-1; su(w[a])-2; su-w; su[wa]; SWAP" /note="CG3019 gene product from transcript CG3019-RM; CG3019-PM; su(w[a])-PM; suppressor of apricot" /codon_start=1 /product="suppressor of white-apricot, isoform M" /protein_id="NP_001259116.1" /db_xref="FLYBASE:FBpp0307668" /db_xref="GeneID:31054" /db_xref="FLYBASE:FBgn0003638" /translation="MLPYNVRNAGGGSVGGILRRTGQGSGTGSTILGNGNSPGALGAG KVSSSLENHRQPPLELLVFGYACKIFRDDEKAREMDHGKQLIPWMGDVNLKIDRYDVR GALCELAPHEAPPGGYGNRLEYLSAEEQRAEQLCEEERYLFLYNNEEELRLRQVLQVS " misc_feature 393..>689 /gene="su(w[a])" /locus_tag="Dmel_CG3019" /gene_synonym="CG3019; Dmel\CG3019; DmSWAP; EG:BACR7A4.10; su(w); su(wa); Su(w[a]); su(w[a])-1; su(w[a])-2; su-w; su[wa]; SWAP" /note="Alternative splicing regulator; Region: DRY_EERY; pfam09750" /db_xref="CDD:462881" ORIGIN 1 ccacctctag cataatatat gtactacatt tatacaaata taaatataat ggaaatatga 61 gaatttaacc aaacaccgcc cgaaatatga gatcctccga gcacagatcc tagcaatcga 121 tctcctcata aagtgagtga gtcgcaagag acgaagggag cgagagagag aaaggagcac 181 ttaaattgca cattcgctgc tgtttgtccg ccgcgatgct gccctacaat gtgcgaaacg 241 ccggtggcgg aagcgttggc ggaatcctgc ggcgcacggg ccaaggttcg ggcaccggaa 301 gcacgattct tggcaatgga aacagtccgg gagcactagg agccggaaaa gtgtcctcca 361 gcctggaaaa ccacagacaa ccgccgttgg aactcctcgt gtttggctac gcctgcaaga 421 ttttccgcga tgacgagaag gcgcgggaaa tggaccacgg caagcagttg attccctgga 481 tgggcgatgt aaatctcaag attgacagat acgatgtgcg tggagccctc tgcgaactgg 541 caccgcacga ggcgccacca ggcggatacg gtaaccggct ggagtacttg agtgccgagg 601 agcagcgcgc cgagcagctg tgcgaggagg agcggtacct gtttctgtac aataacgagg 661 aggagctgcg actgcgacaa gtactgcaag tgtcatgaaa cgcaaaacgc aatcaaaccc 721 aaatcgcaaa tcgaaaataa cttgaacaaa tcagtaccaa tcacatcaaa tccaaccatc 781 gaaaaagata ccaccgacat cccctcgata tttccagcga gtccgttctt ggagcagagg 841 aggacctcaa gcgactgcag caggaaacct cgggcggctg cttcagccag gtgggctttc 901 agtacgatgg ccagtcggca gcctccactt ccatcggtgg ctcctcaacg gcgacctccc 961 agctctcgcc gaactccgag gagagcgagc tgcctttcgt ccttccctac accctgatga 1021 tggcaccacc cttggacatg cagctgcccg aaacgatgaa gcagcacgct atcatagaga 1081 agactgctcg ctttatcgca acccagggcg cccaaatgga aattcttatc aaggcaaagc 1141 aggcgaacaa cacgcagttc gatttcctga cccaaggtgg acatctgcag ccttactacc 1201 gtcacctttt ggctgctatc aaggcggcca agttcccgcc cgcaccacaa actccgttgg 1261 atcagcagaa tacagacaag gaagcaccct cagcggacga ccacagcgag gaagtcgcgg 1321 gtggaaggag gaaccccaac caagtggtca tcacggtgcc caccatcaag tacaagccct 1381 cggccaactg cgcctacacc cagctaatta gcaagatcaa gggcgtgccc ctccaagcgg 1441 tcttgcagga ggacgagtca agcaatccgg gcaactcgca gcactcgggc ggcacggcct 1501 cgcccgcact tagctgtcga tccgaaggtc acaacagcca gggaggtgag ttcacacccg 1561 tattgctgca gtacaacggg agcaccttca cacacgagga ggaatcgtcg aaccgggagc 1621 agcaggatga taacgatgtc aacggtggcg agccgcccca ggtggagctg cttaagaaca 1681 cgagtgcgct ggcgttggcc caaaactata gttcagaaag tgaggaggag gaagatcaag 1741 ttcagccaga aaaggaagag gaaaagaaac cagagcccgt gcttaccttc cccgttccga 1801 aggacagtct aaggcacata atcgacaaga cggccacgta cgtaatcaag aacggacgcc 1861 aattcgagga gacccttcgc acgaagagcg tggatcggtt tagtttcttg ctgccggcca 1921 atgagtacta tccatactac ttgtacaaag tgaccggcga tgtggatgcg gcttccaagg 1981 aggagaaaac taggaaagca gcagccgtag ctgccgccct gatgtcaaag aagggtctta 2041 gttttggagg agcagcagct gcagtgagtg gaagcaatct ggataaggct cctgtaagtt 2101 tctccattcg ggctcgcgat gaccaatgtc cattgcaaca cactttaccg caggaggcca 2161 gcgacgagga gactagttcg aatgctgctg gggtggagca tgtgcgacca ggtatgccag 2221 atagtgtgca acgggccatc aaacaggttg agacgcagtt gttggccagg accgccgggc 2281 agaagggaaa catcacggct tccccatcct gttcctcacc acaaaaagag cagcggcaag 2341 ctgaggagcg tgttaaggat aagctggcgc agattgcccg cgagaagctg aacggaatga 2401 tttcacgcga aaaacaattg cagttggaac gaaagcgaaa ggccttggcc tttctaaatc 2461 agataaaagg tgagggtgcc attgtgggct ctgctgtgcc tgttgttggt ccgaatcctc 2521 cagagtcagc ggccggagct gcgaccgccg acagtggtga cgagtctggt gattctgtac 2581 gttccatacc aattacctac tttggccccg acgacgatga cgaagtcggt gaacagaggc 2641 ctgagatgag gctcataggg agcacgcaga aggacgagga ggacgacgat gaagaggatg 2701 gcggcgatct ggagaagtac aacttgctca acgacgatag cacgaacacc ttcaccagca 2761 aacccgtgct tcctcccacc gctgctccac ctcctgctgc tgttctgctt tctgacgacg 2821 acgacgtcca gcttgtggcc actacctcaa cgcggtcctc cagctcgcgc catctcaaaa 2881 cccaccgccg gagcagaagt cgcagtaaga atgtccgaag cagtgacagc agcccttcta 2941 gtcgagagtc ctcgcgccga cgccgccaga agagcagcag gctttccagg gagccatcat 3001 cgaacccgcc acgtaagtcc cagcattcgt caacgcagcg aaaaaagacc cccaaaaaga 3061 ggaggcgcag caaaagtaga agtcgctcta aaagcatccg gcggagtagg agcataagca 3121 tattgagaaa caaccggcgg agcagatcgc gtagccccag ctgtcgaaat gcagaacagc 3181 gacgccagca ggaccgacgg cgcactccca ctaaaaagtc ccacaagcgg cacaagcgac 3241 gcaggcgcag cagctccccc tgagaatctt cctagagctc cgcaaccacc tccacatttc 3301 aaagtttttt tgtaggttac aagttgtatc aaataaaccc ccaacatatt tttgt