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LOCUS NM_001272174 1749 bp mRNA linear INV 26-DEC-2023 mRNA. ACCESSION NM_001272174 VERSION NM_001272174.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 1749) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1749) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1749) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 1749) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 1749) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 1749) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 1749) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 1749) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 1749) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 1749) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 1749) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 1749) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 1749) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 1749) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 1749) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 1749) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 1749) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 1749) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 1749) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 1749) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 1749) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 1749) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 1749) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1749 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..1749 /gene="Sec22" /locus_tag="Dmel_CG7359" /gene_synonym="34F3.8; CG7359; Dmel\CG7359; EG:34F3.8; sec22; SEC22; Sec22p" /note="Secretory 22" /map="1C5-1C5" /db_xref="FLYBASE:FBgn0260855" /db_xref="GeneID:31030" CDS 410..1051 /gene="Sec22" /locus_tag="Dmel_CG7359" /gene_synonym="34F3.8; CG7359; Dmel\CG7359; EG:34F3.8; sec22; SEC22; Sec22p" /note="CG7359 gene product from transcript CG7359-RB; CG7359-PB; Sec22-PB; Sec22 ortholog" /codon_start=1 /product="secretory 22, isoform B" /protein_id="NP_001259103.1" /db_xref="FLYBASE:FBpp0301847" /db_xref="GeneID:31030" /db_xref="FLYBASE:FBgn0260855" /translation="MALLTMIARVIDGLPLVGTMQDDEQVPSGRSILDYQNQAKMLFR KLGTHSPARCSIETGPYLFHYLIENDVCYLVMVDKMYSKRLAFNYLEDLAQEFHANYG RRVNSVTRPYAFIEFDVYIQKAKKQLTDRRRNISNINTQLQDVQRIMVQNIDDVLQRG TVLAELDTKTQNLSMMSQKYKKDAKLLNRKSMYVKAMALGMILLVFIMYFWVL" misc_feature 416..790 /gene="Sec22" /locus_tag="Dmel_CG7359" /gene_synonym="34F3.8; CG7359; Dmel\CG7359; EG:34F3.8; sec22; SEC22; Sec22p" /note="longin domain; Region: Longin; cd14824" /db_xref="CDD:341428" misc_feature order(416..418,512..514,521..523,581..583,590..592, 596..598) /gene="Sec22" /locus_tag="Dmel_CG7359" /gene_synonym="34F3.8; CG7359; Dmel\CG7359; EG:34F3.8; sec22; SEC22; Sec22p" /note="lipid binding site [chemical binding]; lipid-binding site" /db_xref="CDD:341428" misc_feature order(452..454,461..463,467..469,515..517,527..529, 764..766,776..778,785..787) /gene="Sec22" /locus_tag="Dmel_CG7359" /gene_synonym="34F3.8; CG7359; Dmel\CG7359; EG:34F3.8; sec22; SEC22; Sec22p" /note="Sec22 interface [polypeptide binding]; other site" /db_xref="CDD:341428" misc_feature order(578..580,587..589,647..649,659..661) /gene="Sec22" /locus_tag="Dmel_CG7359" /gene_synonym="34F3.8; CG7359; Dmel\CG7359; EG:34F3.8; sec22; SEC22; Sec22p" /note="VARP interface [polypeptide binding]; other site" /db_xref="CDD:341428" misc_feature 803..994 /gene="Sec22" /locus_tag="Dmel_CG7359" /gene_synonym="34F3.8; CG7359; Dmel\CG7359; EG:34F3.8; sec22; SEC22; Sec22p" /note="SNARE motif of SEC22; Region: R-SNARE_SEC22; cd15866" /db_xref="CDD:277219" misc_feature order(809..817,821..826,830..847,851..859,863..865, 872..877,881..889,893..910,914..931,935..952,956..973, 977..985) /gene="Sec22" /locus_tag="Dmel_CG7359" /gene_synonym="34F3.8; CG7359; Dmel\CG7359; EG:34F3.8; sec22; SEC22; Sec22p" /note="heterotetramer interface [polypeptide binding]; other site" /db_xref="CDD:277219" misc_feature 884..886 /gene="Sec22" /locus_tag="Dmel_CG7359" /gene_synonym="34F3.8; CG7359; Dmel\CG7359; EG:34F3.8; sec22; SEC22; Sec22p" /note="zero layer; other site" /db_xref="CDD:277219" ORIGIN 1 cggtatattt acacggacat accggtgacg tggttacatt gcaacaaaca tccacagaaa 61 cctccaatcc actccaatcc cagacacccg cccgccgcga cgttgcaaca cagttttcat 121 ggtagcagcg aacgttcccg attcgaggca gagtccattt ggaagtcccg ggcatcgcag 181 gagcactgcg gcaagcaccg accgatcggc tgagttgtga aatccaagaa gtggaagagg 241 acgaccggac acaaacttca cacactggtg actggactgc agcggatcca catcggaata 301 agtagcagcc agtggaagga ggcgacggca gagtgcagcc gtggccaaga agacttgaga 361 cgcagccccg tagttccgcg agcaatcgta accaggaaca gcagaagcca tggcgctgct 421 gaccatgata gccagggtca tcgatggcct tcctctggtg gggaccatgc aggatgacga 481 gcaggtaccc agcggacgca gcatactgga ctaccaaaac caggctaaga tgctcttccg 541 caagctgggt acccactccc cggctcgatg cagtatcgag accggaccct acctattcca 601 ctacctaatc gagaacgacg tctgctacct ggtgatggtg gacaagatgt actcaaagcg 661 actggccttc aattacctgg aggacctggc ccaggagttc catgctaact acggccggcg 721 agtaaactca gtgactcgcc catacgcatt catcgagttt gacgtgtaca tacagaaggc 781 gaaaaaacag ttgacggacc gcagacgcaa catcagcaac atcaacacac agctgcagga 841 tgtgcagcgc atcatggtgc aaaacattga cgacgtgctc caacgtggca cagtgctggc 901 ggaactcgac accaagaccc agaacctatc gatgatgtca cagaagtaca agaaggacgc 961 caagctgctc aaccgaaagt ccatgtacgt gaaggcgatg gccttgggca tgatacttct 1021 agtgttcatc atgtatttct gggttctgta atatcaagca gttccatggc cactcggagc 1081 ggcgcgttct ttgttggagt caagcgtcaa ggacgcaaga ccaaaagaca tttagattac 1141 gcgtgcacct gtactccacg ccaccaacca caccatattc attcatatct atgaatcata 1201 ggcaagcgaa aagtgaatag cgaaaccccc taccagcata cgcatcgctc ccgaggattg 1261 ttttacttct aatattaact tacctttgcg ttatttacgg tctgggattc cattaattat 1321 taactcccat ttcatttcgc ctcgcgcttc cgttgcgcag gttttctaaa tatttgatta 1381 cgaatcgggt ttagtttaga cgacctttga gccaagtcgg ttgactacga cccaaatctg 1441 taaattatga gcgtcgatcc gtgtgtgtgt gtataaatgt ctagattgta gatggatcgc 1501 tgcatagcga atccgaatcc ggcggagtgc ttgatacaag ctgcaaaaac accgcaaaaa 1561 acaaaagaaa aagaaaagat aacaagcgaa ccgaaagaaa agaaaagaag agaaagggaa 1621 ataaacaata acagttttag gcaatttata tgtgtaaaat taaggcaaat aaataaattt 1681 atattgttta ataaagagaa ggcaaaactg tgttcgatgc actacccaag cccgaaagat 1741 agaaactgc