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LOCUS NM_001258692 3133 bp mRNA linear INV 26-DEC-2023 mRNA. ACCESSION NM_001258692 VERSION NM_001258692.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3133) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3133) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3133) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3133) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3133) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3133) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3133) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3133) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3133) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3133) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3133) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3133) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3133) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3133) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3133) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3133) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3133) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3133) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3133) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3133) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3133) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3133) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3133) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001258692.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3133 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3133 /gene="GCS1" /locus_tag="Dmel_CG1597" /gene_synonym="CG1597; Dmel\CG1597" /note="Glucosidase 1" /map="10B3-10B3" /db_xref="FLYBASE:FBgn0030289" /db_xref="GeneID:32073" CDS 120..2669 /gene="GCS1" /locus_tag="Dmel_CG1597" /gene_synonym="CG1597; Dmel\CG1597" /EC_number="3.2.1.106" /note="CG1597 gene product from transcript CG1597-RC; CG1597-PC; GCS1-PC" /codon_start=1 /product="glucosidase 1, isoform C" /protein_id="NP_001245621.1" /db_xref="FLYBASE:FBpp0298826" /db_xref="GeneID:32073" /db_xref="FLYBASE:FBgn0030289" /translation="MARNTGSSSGSTPAASSSGSSAAAAAAAAAAAAAASNAKQKQRS PRFSLSSNLILDKWKTMIGCVCLAIASYFGYLGYLETRVNTPFDHQKMVVHAGLEQPD RYWGSYRPLTYFGMKTRDPHSLVMGLMWYTPSNLGPGGQGIRHWCEQGDKLDSYGWTH HDGRSFGVQEIQDLPFELKTSFVKYPEGKQYGGDWTARISVRNTTRAWDKSISLIWYV ALDERTNGHIKYVSDDKSPEPGVYGEAQGLGEFQVRFHAVKGKILHKSYLSTVAPSLA KLKDTLFSHFRAFADKRGNRFIGLPGEIVSQNGLPSSNPEPNFIAIQITAEVDFTLDI TYQSTSGFSLGESIPKPPTGRAYQDSLQAKIAQFEQRFEDRFQLKQKGHSPEEVRFAR NALSNLLGGIGYFYGSSRVQSVYTKNPVPYWKAPLYTAVPSRSFFPRGFLWDEGFHGL LISAWDIDIELDIICHWFDLLNVEGWIPREQILGVEALAKVPEEFVTQRNSNANPPTF FLTLKKLLTSHRAELSQNGRLATLERLYPRVQAWFNWFNTTQRGEVLGTYLWRGRNAT TTRELNPKSLSSGLDDYPRASHPTDKERHLDLRCWIALAAGVMAELSTLLGKDDAKYY ETASYLTDNVRLNRLHLAPYSEQYADWGLHTDQVKLKRPPSMAPQQQQRHHHQHYQLP EMQRVTGELPTYQFVDSAFGYVSLFPLLLEQLDHDSPYLTKLLNDLRDPEQLWTNYGL RSLSKRSPLYMQRNTEHDPPYWRGPIWININYLAAKALHHYGKIDGPNAALARQIYAE LRDNLVGNILRQYKRSGYLWEQYDDTSGEGKGCNPFTGWTATVVLLMAEQF" misc_feature 429..>887 /gene="GCS1" /locus_tag="Dmel_CG1597" /gene_synonym="CG1597; Dmel\CG1597" /note="Glycosyl hydrolase family 63 N-terminal domain; Region: Glyco_hydro_63N; pfam16923" /db_xref="CDD:465316" misc_feature 1173..2660 /gene="GCS1" /locus_tag="Dmel_CG1597" /gene_synonym="CG1597; Dmel\CG1597" /note="Glycosyl hydrolase family 63 C-terminal domain; Region: Glyco_hydro_63; pfam03200" /db_xref="CDD:397353" ORIGIN 1 tagttgggat gatccggcaa cgcagtgcgg atcgaaataa aaaagaaaac aatgcgctcg 61 caagaaaatt gaagcaacaa caaatagccg ataaatcaga gccaagggac aagcgcaaaa 121 tggctaggaa cacgggcagc tcctcgggct ccacgcccgc tgcatcctca tccggatcga 181 gcgcagcagc agcagcggcg gcggcagcgg cagcagcagc ggcatccaat gccaaacaga 241 agcagcgcag cccgcgtttc agtttatcct cgaatttgat cctggacaaa tggaaaacga 301 tgattggttg cgtttgcctg gcgatagcct cgtacttcgg ctatctgggc tacctggaga 361 cgcgcgttaa cacgcccttc gatcaccaga agatggtggt gcatgccggc ctggagcaac 421 cggatcgcta ctggggctcc taccgtccgt tgacgtactt cggcatgaag accagggatc 481 cgcactcgct ggtcatgggc ctgatgtggt atacgcccag taatctgggc cccggtggcc 541 agggcattcg acactggtgc gagcagggcg ataaactgga ctcgtacggc tggacgcatc 601 acgatggccg cagttttggc gttcaagaga tccaggatct gcccttcgag ctgaagacct 661 cgttcgttaa gtatccagag ggcaagcagt acggcggcga ttggactgcc aggatatcgg 721 tgaggaatac gacaagggcg tgggacaaga gcatctcgct aatctggtat gtggcattgg 781 atgagcgcac caatggacac attaagtacg tgtcggacga caagagtccg gagccgggcg 841 tctatggtga ggcgcagggc ctgggcgagt tccaagtgcg tttccatgcc gtcaagggca 901 agatactgca taaatcctat ctcagcacgg tggcaccgtc gctggccaag ctcaaggata 961 cgctcttctc gcacttccgc gccttcgccg acaagcgtgg caatcgcttc atcggcctgc 1021 ccggcgagat agtctcgcag aatggcctgc catcctccaa tccggagccc aatttcatag 1081 ccatacagat aacggcggag gtggacttca cgctggacat tacgtaccag tcgacgtcgg 1141 gcttttcgct tggcgagtcg atacccaagc cgccgacggg acgagcctat caggattcgc 1201 ttcaggcgaa aatagcacaa tttgagcagc gtttcgagga tcgtttccag ctgaagcaga 1261 agggtcactc gccggaggag gtgcgatttg cgcgcaacgc attgagcaat ctgcttggcg 1321 gcattggtta cttctatggc tccagtcgcg tgcaatcggt gtacacaaag aatccggtgc 1381 cctactggaa ggctccactg tacacggccg tgccgtcgcg tagcttcttt cccaggggct 1441 tcctttggga cgagggcttc cacggcctgt tgatcagtgc gtgggacatc gatatcgagc 1501 tggatatcat atgccattgg ttcgatttgc tcaacgtgga gggctggata cccagggagc 1561 aaatcctggg cgttgaggcg ctggccaagg tgcccgagga gtttgtcacg caacggaata 1621 gcaacgccaa tccgccgacg ttctttctta cgctcaagaa actgctgacc agccaccggg 1681 cggagttgtc gcaaaacggc agattggcca cgctggagcg gctctatccg cgtgtccagg 1741 cctggttcaa ttggttcaac accacgcaga ggggtgaagt gttgggcaca tatttgtggc 1801 gcggcaggaa cgcgaccacc acgcgcgaat tgaaccccaa gagtctgtcc tccggcctgg 1861 acgattatcc gcgcgcctcg catcccacgg acaaggagcg tcacctggac ctgcgctgct 1921 ggattgccct ggccgccggt gtgatggccg aactgtccac gctgctgggc aaggacgatg 1981 ccaagtacta cgagacggca tcgtacttaa cggacaatgt gcgtctgaat cgcctccatt 2041 tggcgccgta cagcgaacag tacgccgact ggggcctgca cacggaccag gtgaagctga 2101 agcgtccgcc gtccatggcg ccgcagcagc agcagcggca tcatcaccag cactaccagc 2161 tgcccgagat gcaacgtgtg accggcgagt tgccgaccta tcagttcgtg gacagcgcct 2221 ttggctatgt tagcctgttt ccgttgctgc tcgagcaact ggatcacgat tcgccgtatc 2281 tgaccaagtt gctaaacgat ctgcgtgatc cggaacagtt gtggaccaac tacggtctgc 2341 gttcgctttc gaagagatcg ccattgtata tgcaacgcaa tacggaacac gatccgccgt 2401 attggcgtgg acccatctgg attaatatca actatttggc ggccaaggcg ctgcatcact 2461 atggcaagat cgatggaccg aatgcggcgt tggcgcgaca aatttacgcc gaactgcgcg 2521 acaatctggt gggcaacatc ctgcggcagt acaagcgcag cggctacttg tgggagcagt 2581 acgatgacac cagcggcgag ggcaagggct gcaatccgtt caccggctgg acggccaccg 2641 ttgtcctcct gatggccgag caattctaga tctcgcctac acggttttca gcctgccaaa 2701 actgctgtga gttcctcaac gaacgaccct gtccccgcat tcctggcgaa gatcaatgcg 2761 tttttgtgtg tgtttggaat agctgggtgc ttcaattgca aacgtttgga gtaccaaata 2821 aattttactt aaattgtagc caaaactatc atcatctatg gagattcgtt tgttagtttt 2881 cgtgtgtgtg tccgtgttgt ttgtgacaca cgatatacca aagattaata taatgactcg 2941 ctgtggtttt aagtagtttg tgctaagata tttgattgcc agttgggcgt gtagcttgta 3001 agcttagaga acaaacccag ctattcctag ttagcaattt cacgctccag tttgctatac 3061 gcgatactta agatacttgg agtgcaaagt aatcatttct cctagcgtta aatagacgaa 3121 ttttaaaatt gac