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LOCUS NM_001258629 2794 bp mRNA linear INV 26-DEC-2023 variant D, mRNA. ACCESSION NM_001258629 VERSION NM_001258629.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2794) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2794) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2794) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2794) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2794) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2794) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2794) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2794) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2794) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2794) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2794) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2794) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2794) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2794) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2794) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2794) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2794) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2794) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2794) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2794) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2794) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2794) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2794) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_001258629.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2794 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2794 /gene="ogre" /locus_tag="Dmel_CG3039" /gene_synonym="cb-8; CB8; CG3039; Dm-inx1; Dmel\CG3039; FBpp0070995; inx-1; inx1; Inx1; jnL3; l(1)6Ec; l(1)jnL3; l(1)ogre; Ogre" /note="optic ganglion reduced" /map="6E4-6E4" /db_xref="FLYBASE:FBgn0004646" /db_xref="GeneID:45382" CDS 1310..2398 /gene="ogre" /locus_tag="Dmel_CG3039" /gene_synonym="cb-8; CB8; CG3039; Dm-inx1; Dmel\CG3039; FBpp0070995; inx-1; inx1; Inx1; jnL3; l(1)6Ec; l(1)jnL3; l(1)ogre; Ogre" /note="CG3039 gene product from transcript CG3039-RD; CG3039-PD; ogre-PD; innexin 1; optic ganglion reduced; contrast-blind-8; optic ganglia-reduced; innexin-1" /codon_start=1 /product="optic ganglion reduced, isoform D" /protein_id="NP_001245558.1" /db_xref="FLYBASE:FBpp0301608" /db_xref="GeneID:45382" /db_xref="FLYBASE:FBgn0004646" /translation="MYKLLGSLKSYLKWQDIQTDNAVFRLHNSFTTVLLLTCSLIITA TQYVGQPISCIVNGVPPHVVNTFCWIHSTFTMPDAFRRQVGREVAHPGVANDFGDEDA KKYYTYYQWVCFVLFFQAMACYTPKFLWNKFEGGLMRMIVMGLNITICTREEKEAKRD ALLDYLIKHVKRHKLYAIRYWACEFLCCINIIVQMYLMNRFFDGEFLSYGTNIMKLSD VPQEQRVDPMVYVFPRVTKCTFHKYGPSGSLQKHDSLCILPLNIVNEKTYVFIWFWFW ILLVLLIGLIVFRGCIIFMPKFRPRLLNASNRMIPMEICRSLSRKLDIGDWWLIYMLG RNLDPVIYKDVMSEFAKQVEPSKHDRAK" misc_feature 1370..2365 /gene="ogre" /locus_tag="Dmel_CG3039" /gene_synonym="cb-8; CB8; CG3039; Dm-inx1; Dmel\CG3039; FBpp0070995; inx-1; inx1; Inx1; jnL3; l(1)6Ec; l(1)jnL3; l(1)ogre; Ogre" /note="Region: Innexin; pfam00876" /db_xref="CDD:459975" ORIGIN 1 agtacgtgac gcgtagagca taaaaaacaa acaaacgggc tcacacagag tcccagtgca 61 cagatacaga tacaaagata ctttgccttt gttcctctgc tctgtctccc aagttgatgg 121 cttgtgttag catttttgaa tggctgttta taatggaaca ccttaaacag atttaacgat 181 ctttctggag ttctttgaag gccttgtgct ccgtgctaat tttccaccga aaggaactat 241 tttgagcacc tctagatgat tgttctccag cctgcctgat gaattccagt accacggaca 301 ttgacgatct tcgcttactt gaaaacatat gcgcggtctc actctatata tagaaccctt 361 gcgatggtcc acggactctg gtattttcca tacgattcct tttgatcgtc gaatgttctg 421 caaattgtta atgcactcga acatagtaca tacacaactg aaaaataaat atatttaatc 481 gaatcttttt ttttataaaa attaactata tttataaata taacgttaaa gctatcattt 541 ttaatttcta cgtgctcata aatatatttc acttttacca accttagtca tatttttcac 601 tgtgtagtaa aagccagaca taaaaggaag ctgcagtccc cctttatcaa cccccttttt 661 ctctcttttc tttctctctc tctctcttcc ccatcccttt tagggaagca gtccaaaaag 721 gaagttgcaa aaacaggagc agctgctgca acaaatgaga tttgcacatt ttagtgagcg 781 aatttctctg agaggagcgc ttcttaccaa gaagcgcaaa cacactggga taaaaataaa 841 tacaattcta cgttcgtgct cctgctcacg tacatgagtc cgccgatatc gataccaccg 901 atacctgatt cgagtacttt tgcggcttat ggcctggtga ggagggagtg gcggggtgtg 961 tgtggttaat ggaccgattg cgacagacgt gacacttggc caagtgaaag gtaccaccaa 1021 tgataccatt gtccgcatgt tttcggcatt tcgtgtgggt acagtatgtg ttaagagaat 1081 atatctgttt gctgacattt gattgcacat gtgcgagtcg atttaaagtt gatatgcatc 1141 gaaagctgaa ggcgaagaga attcgaaaca agacaagaac cggcaagaga aagttaaagt 1201 cgcgtctagc ataacaacgt ttccgtttgg gaagatcaaa cacactgccc ggaggagaag 1261 ctcccgaaag atcctgatcc ttgcccactg agatccaaac tgtgccaaga tgtataagtt 1321 gctgggtagc ctgaagagct acctcaagtg gcaggacatc cagacggaca acgccgtctt 1381 ccggctgcac aactccttta ccacggtgct cctgctaacc tgcagcctga tcatcaccgc 1441 cacccagtac gtgggccagc cgattagctg catcgtcaat ggcgtaccgc cgcacgtggt 1501 caacacgttc tgctggatcc acagcacttt caccatgccg gacgcttttc gcagacaggt 1561 tggccgagag gtggctcatc ccggtgtggc caatgatttt ggcgacgagg atgccaagaa 1621 gtactacacc tactaccagt gggtgtgctt cgtgcttttc ttccaggcca tggcctgtta 1681 tacgcccaaa ttcctgtgga ataaattcga gggcggactg atgcgcatga ttgtgatggg 1741 tctgaatatc acgatctgca cccgcgagga gaaggaggcc aaacgcgatg ccctgctgga 1801 ctatctgatc aagcacgtga agcgccacaa gctgtacgcc attcggtact gggcctgcga 1861 atttctctgc tgcatcaaca ttatcgtgca gatgtatctg atgaatcgct ttttcgatgg 1921 cgagttcctc tcgtacggta cgaatatcat gaagctttcg gatgtgccgc aggagcaaag 1981 ggtggatccc atggtctatg tgttcccccg ggtgaccaag tgcaccttcc acaagtatgg 2041 tccctctggt tcgctgcaga agcacgactc actctgcatc ctgccgctga acattgtgaa 2101 cgagaagacg tacgtgttca tctggttctg gttctggatc ctgctcgtcc tgctcatcgg 2161 actgatagtg ttccgtggct gcattatctt tatgccgaaa ttccgacccc gcctcctgaa 2221 cgccagcaat cgcatgattc cgatggagat ctgtcgctcg ctgtcccgca aactggacat 2281 cggtgactgg tggctaatct atatgctggg tcgcaatctt gatccggtca tctacaagga 2341 cgtgatgagc gagtttgcca agcaggtgga gccctccaag cacgaccgtg ccaagtagac 2401 cagatgtacg agatgatgcc ccccgatatg ccgttcgata tatcaatcac cctgcctatt 2461 agtccccatc attttgtccg aaacccgaaa ttccgaattc tgttttggat tttttatttt 2521 tatttagcac aaatcatact acttagttga aactcgagac caggacaggg ccacgccccc 2581 aacgccccgt tggtagttct gtgattaagc cctgaccttt taaccccttc caaaaacgaa 2641 cccaattccc atcccctgac ccaagccaaa agctatcata cacatggatt aatcaatgat 2701 cacaactcga atcgcttggc agaaaagaca attcttttat tttaattttt tttttatttt 2761 tgattttcca tcaatgataa caagacaaac aaac