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LOCUS NM_001258605 1499 bp mRNA linear INV 26-DEC-2023 (Tre1), mRNA. ACCESSION NM_001258605 VERSION NM_001258605.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 1499) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1499) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1499) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 1499) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 1499) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 1499) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 1499) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 1499) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 1499) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 1499) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 1499) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 1499) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 1499) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 1499) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 1499) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 1499) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 1499) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 1499) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 1499) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 1499) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 1499) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 1499) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 1499) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1499 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..1499 /gene="Tre1" /locus_tag="Dmel_CG3171" /gene_synonym="anon-WO0170980.16; anon-WO0170980.17; anon-WO0170981.1; BEST:LD12308; CG 3171; CG3171; Dmel\CG3171; LD12308; sctt; Tre; TRE; tre-1; Tre-1; tre1" /note="Trapped in endoderm 1" /map="5A11-5A12" /db_xref="FLYBASE:FBgn0046687" /db_xref="GeneID:140439" CDS 185..1363 /gene="Tre1" /locus_tag="Dmel_CG3171" /gene_synonym="anon-WO0170980.16; anon-WO0170980.17; anon-WO0170981.1; BEST:LD12308; CG 3171; CG3171; Dmel\CG3171; LD12308; sctt; Tre; TRE; tre-1; Tre-1; tre1" /note="CG3171 gene product from transcript CG3171-RB; CG3171-PB; Tre1-PB; trapped in endoderm-1; scattershot; G protein coupled receptor; trapped in endoderm 1" /codon_start=1 /product="trapped in endoderm 1, isoform B" /protein_id="NP_001245534.1" /db_xref="FLYBASE:FBpp0300658" /db_xref="GeneID:140439" /db_xref="FLYBASE:FBgn0046687" /translation="MDQDMGMATGYFQDADMQMDEPAAATQSIYPHSATLFAAISACV FVTIGVLGNLITLLALLKSPTIREHATTAFVISLSISDLLFCSFSLPLTAVRFFQESW TFGTTLCKIFPVIFYGNVAVSLLSMVGITLNRYILIACHSRYSQIYKPKFITLQLLFV WAVSFLLLLPPILGIWGEMGLDEATFSCTILKKEGRSIKKTLFVIGFLLPCLVIIVSY SCIYITVLHQKKKIRNHDNFQIAAAKGSSSSGGGSYMTTTCTRKAREDNRLTVMMVTI FLCFLVCFLPLMLANVVDDERNTSYPWLHIIASVMAWASSVINPIIYAASNRNYRVAY YKIFALLKFWGEPLSPMPSRNYHQSKNSKELSGVIRSTPLFHAVQKNSINQMCQTYSV " misc_feature 293..1186 /gene="Tre1" /locus_tag="Dmel_CG3171" /gene_synonym="anon-WO0170980.16; anon-WO0170980.17; anon-WO0170981.1; BEST:LD12308; CG 3171; CG3171; Dmel\CG3171; LD12308; sctt; Tre; TRE; tre-1; Tre-1; tre1" /note="G protein-coupled receptor 84 and similar proteins, member of the class A family of seven-transmembrane G protein-coupled receptors; Region: 7tmA_GPR84-like; cd15210" /db_xref="CDD:320338" misc_feature 293..373 /gene="Tre1" /locus_tag="Dmel_CG3171" /gene_synonym="anon-WO0170980.16; anon-WO0170980.17; anon-WO0170981.1; BEST:LD12308; CG 3171; CG3171; Dmel\CG3171; LD12308; sctt; Tre; TRE; tre-1; Tre-1; tre1" /note="TM helix 1 [structural motif]; Region: TM helix 1" /db_xref="CDD:320338" misc_feature 395..466 /gene="Tre1" /locus_tag="Dmel_CG3171" /gene_synonym="anon-WO0170980.16; anon-WO0170980.17; anon-WO0170981.1; BEST:LD12308; CG 3171; CG3171; Dmel\CG3171; LD12308; sctt; Tre; TRE; tre-1; Tre-1; tre1" /note="TM helix 2 [structural motif]; Region: TM helix 2" /db_xref="CDD:320338" misc_feature order(461..463,470..475,509..526,530..535,542..544, 677..679,683..697,767..769,776..784,788..796,800..805, 1034..1036,1043..1048,1052..1057,1064..1066,1085..1090, 1094..1102,1109..1111,1118..1123) /gene="Tre1" /locus_tag="Dmel_CG3171" /gene_synonym="anon-WO0170980.16; anon-WO0170980.17; anon-WO0170981.1; BEST:LD12308; CG 3171; CG3171; Dmel\CG3171; LD12308; sctt; Tre; TRE; tre-1; Tre-1; tre1" /note="putative ligand binding pocket [chemical binding]; other site" /db_xref="CDD:320338" misc_feature 509..601 /gene="Tre1" /locus_tag="Dmel_CG3171" /gene_synonym="anon-WO0170980.16; anon-WO0170980.17; anon-WO0170981.1; BEST:LD12308; CG 3171; CG3171; Dmel\CG3171; LD12308; sctt; Tre; TRE; tre-1; Tre-1; tre1" /note="TM helix 3 [structural motif]; Region: TM helix 3" /db_xref="CDD:320338" misc_feature 641..697 /gene="Tre1" /locus_tag="Dmel_CG3171" /gene_synonym="anon-WO0170980.16; anon-WO0170980.17; anon-WO0170981.1; BEST:LD12308; CG 3171; CG3171; Dmel\CG3171; LD12308; sctt; Tre; TRE; tre-1; Tre-1; tre1" /note="TM helix 4 [structural motif]; Region: TM helix 4" /db_xref="CDD:320338" misc_feature 767..844 /gene="Tre1" /locus_tag="Dmel_CG3171" /gene_synonym="anon-WO0170980.16; anon-WO0170980.17; anon-WO0170981.1; BEST:LD12308; CG 3171; CG3171; Dmel\CG3171; LD12308; sctt; Tre; TRE; tre-1; Tre-1; tre1" /note="TM helix 5 [structural motif]; Region: TM helix 5" /db_xref="CDD:320338" misc_feature 974..1066 /gene="Tre1" /locus_tag="Dmel_CG3171" /gene_synonym="anon-WO0170980.16; anon-WO0170980.17; anon-WO0170981.1; BEST:LD12308; CG 3171; CG3171; Dmel\CG3171; LD12308; sctt; Tre; TRE; tre-1; Tre-1; tre1" /note="TM helix 6 [structural motif]; Region: TM helix 6" /db_xref="CDD:320338" misc_feature 1088..1165 /gene="Tre1" /locus_tag="Dmel_CG3171" /gene_synonym="anon-WO0170980.16; anon-WO0170980.17; anon-WO0170981.1; BEST:LD12308; CG 3171; CG3171; Dmel\CG3171; LD12308; sctt; Tre; TRE; tre-1; Tre-1; tre1" /note="TM helix 7 [structural motif]; Region: TM helix 7" /db_xref="CDD:320338" ORIGIN 1 ttcgaaactc tgaagaaaac ccagagaaga taagagcgta cttgacagca tatagcaaaa 61 ctattgtaca tttccaaatt tcaattggaa tcgaaacggg aacagtcaat cgcttgggtt 121 atcggaataa tcgcctcaat tgcgtgaacc tatcgacaca aagtgcattg gtattgagtc 181 aaaaatggat caggacatgg gcatggcaac gggctacttt caggacgcag acatgcagat 241 ggatgaaccg gcggccgcca cgcaatcgat ctacccgcat tcggcgacat tattcgcggc 301 cattagtgcc tgtgtctttg tgacgatcgg cgttcttggc aacctgatta ccctgctggc 361 gctgctcaag agccccacga tacgggagca tgccacaacc gccttcgtca tttcgctaag 421 catctccgac ctgctcttct gctccttcag cctgccactg accgcagtgc gattcttcca 481 ggagagctgg acttttggta ccacattgtg caagatcttt ccggtgatct tctatggcaa 541 tgtggctgtt tcactcctca gcatggtggg catcaccctg aacagatata tactcatcgc 601 ttgccacagc cgctactcgc agatatataa gcctaagttc ataaccctgc agctgttgtt 661 cgtttgggcc gtctcctttc tgctgttgct gccgcccata ttgggcatct ggggcgagat 721 gggcctggac gaggccacct tctcctgcac aatactcaag aaggaggggc gatcgatcaa 781 gaagacgctg ttcgtgatcg gcttcctgct gccttgcctg gtgatcatcg tttcgtactc 841 gtgcatctac attacggtgc tgcaccagaa aaagaagatt cgcaaccacg ataacttcca 901 gatcgcagcg gccaagggct cctcgtcgtc cggcggcgga tcctacatga ccaccacatg 961 cacgcgcaag gcgcgcgaag acaatcgact gaccgtcatg atggtcacca tctttctgtg 1021 cttcctcgtc tgcttcctgc cgctaatgct ggccaatgtg gtggacgacg agcgcaatac 1081 ctcgtacccc tggctgcaca tcatcgcctc cgtgatggcc tgggcttcca gtgtcattaa 1141 cccgatcatc tatgcggcca gcaatcgcaa ctacagagtg gcctactaca agatctttgc 1201 gctgctcaag ttctggggcg aaccgttgtc gccgatgccg agtagaaact atcaccaaag 1261 caagaactcc aaggagctgt cgggcgtcat ccgcagcacg ccgctgtttc acgctgtgca 1321 gaagaatagt attaaccaaa tgtgccaaac atattcagta tgatcgagct cgcagtcgag 1381 agcttgtaat tcatatcaat tacctactta ttacttgtta gttcataatt atttacgatg 1441 tatggccgtg cttacatcaa agacaatcga attaaataca tatacgtaga ccaattgag