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LOCUS NM_001258561 1596 bp mRNA linear INV 26-DEC-2023 variant C, mRNA. ACCESSION NM_001258561 VERSION NM_001258561.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 1596) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1596) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1596) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 1596) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 1596) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 1596) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 1596) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 1596) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 1596) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 1596) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 1596) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 1596) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 1596) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 1596) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 1596) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 1596) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 1596) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 1596) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 1596) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 1596) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 1596) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 1596) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 1596) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1596 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..1596 /gene="tko" /locus_tag="Dmel_CG7925" /gene_synonym="CG7925; Dmel\CG7925; EG:BACH59J11.1; l(1)3Ab; l(1)tko; MRP-S12; mRpS12; MRPS12; mt-rps12; rps12; S12; Tko" /note="technical knockout" /map="3A3-3A3" /db_xref="FLYBASE:FBgn0003714" /db_xref="GeneID:31228" CDS 1083..1547 /gene="tko" /locus_tag="Dmel_CG7925" /gene_synonym="CG7925; Dmel\CG7925; EG:BACH59J11.1; l(1)3Ab; l(1)tko; MRP-S12; mRpS12; MRPS12; mt-rps12; rps12; S12; Tko" /note="CG7925 gene product from transcript CG7925-RC; CG7925-PC; tko-PC; technical knockout; mitoribosomal protein S12; mitochondrial ribosomal protein S12" /codon_start=1 /product="technical knockout, isoform C" /protein_id="NP_001245490.1" /db_xref="FLYBASE:FBpp0300988" /db_xref="GeneID:31228" /db_xref="FLYBASE:FBgn0003714" /translation="MIMIAISNLEQLILLYWFSLSDISNSFTSLPAIQCSYETAVRGM ASLQQMHRSGPHIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRLSTG KEMVAYIPGIGHNLQEHNIVLCRVGRLQDVPGVKLKAVRGVYDLAHVVKKSQ" misc_feature 1218..1538 /gene="tko" /locus_tag="Dmel_CG7925" /gene_synonym="CG7925; Dmel\CG7925; EG:BACH59J11.1; l(1)3Ab; l(1)tko; MRP-S12; mRpS12; MRPS12; mt-rps12; rps12; S12; Tko" /note="S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit...; Region: Ribosomal_S12; cd03368" /db_xref="CDD:239466" misc_feature order(1221..1226,1230..1235,1242..1247) /gene="tko" /locus_tag="Dmel_CG7925" /gene_synonym="CG7925; Dmel\CG7925; EG:BACH59J11.1; l(1)3Ab; l(1)tko; MRP-S12; mRpS12; MRPS12; mt-rps12; rps12; S12; Tko" /note="S17 interaction site [polypeptide binding]; other site" /db_xref="CDD:239466" misc_feature 1221..1223 /gene="tko" /locus_tag="Dmel_CG7925" /gene_synonym="CG7925; Dmel\CG7925; EG:BACH59J11.1; l(1)3Ab; l(1)tko; MRP-S12; mRpS12; MRPS12; mt-rps12; rps12; S12; Tko" /note="S8 interaction site [active]" /db_xref="CDD:239466" misc_feature order(1245..1253,1284..1286,1290..1295,1299..1301, 1344..1349,1353..1361,1380..1382,1404..1406,1413..1418, 1455..1460,1470..1475,1536..1538) /gene="tko" /locus_tag="Dmel_CG7925" /gene_synonym="CG7925; Dmel\CG7925; EG:BACH59J11.1; l(1)3Ab; l(1)tko; MRP-S12; mRpS12; MRPS12; mt-rps12; rps12; S12; Tko" /note="16S rRNA interaction site [nucleotide binding]; other site" /db_xref="CDD:239466" misc_feature order(1335..1340,1470..1472) /gene="tko" /locus_tag="Dmel_CG7925" /gene_synonym="CG7925; Dmel\CG7925; EG:BACH59J11.1; l(1)3Ab; l(1)tko; MRP-S12; mRpS12; MRPS12; mt-rps12; rps12; S12; Tko" /note="streptomycin interaction site [chemical binding]; other site" /db_xref="CDD:239466" misc_feature 1338..1343 /gene="tko" /locus_tag="Dmel_CG7925" /gene_synonym="CG7925; Dmel\CG7925; EG:BACH59J11.1; l(1)3Ab; l(1)tko; MRP-S12; mRpS12; MRPS12; mt-rps12; rps12; S12; Tko" /note="23S rRNA interaction site [nucleotide binding]; other site" /db_xref="CDD:239466" misc_feature order(1341..1358,1416..1442) /gene="tko" /locus_tag="Dmel_CG7925" /gene_synonym="CG7925; Dmel\CG7925; EG:BACH59J11.1; l(1)3Ab; l(1)tko; MRP-S12; mRpS12; MRPS12; mt-rps12; rps12; S12; Tko" /note="aminoacyl-tRNA interaction site (A-site) [nucleotide binding]; other site" /db_xref="CDD:239466" ORIGIN 1 acctgtgcca gctctaggac agcaacagct gattgtcaca ttagaattga attggaatta 61 gattattaaa tattttagcg cttttataac acaaaaggcc gactaaatag cttccgagca 121 agcgccacca atccgagcga cggctggtac tacaaactga acaaaaaact actgaacaaa 181 actccaagag catgaatttt ctgcggcaat cctttggcat tacgaaacag ttggcttcgc 241 aggctgctcc taagcaggaa ctggccctca ggagtccgtg acttggcgca tttagccacc 301 cttccgctgc gaagcgaaaa ccaaataaac cgggagcgca taagtgtttg ttttcccccc 361 gactttcgtg catttccccc aggttttacc aactcttttt gagttggccg cgcgtggcgg 421 ccgcactttt cgcctgcgaa tattttcatt gccagtttca catgcacatc aacatgcaca 481 ttccgcagct cccccgcttt agattggaaa aataattgaa aacctgtcac cccgaaaaag 541 aaggaaaagc gcggaaacaa tggaaatgtt caaccgcaaa aaaaaggtcg cagtttagga 601 gacaataggt gccggatttg tttgtccggc aatcctgcat atggaaatta ttacctgccg 661 cttgtgttgt gtgtggcatt tggcatattt ataattgaaa acgctgctac gtcgctttgt 721 ttctggccaa aaaggcttga caggattcgg agcgagtact tccatgcttg cgcgtcattt 781 ggccgcaatt attgtcgcca gccgccaact ccgttccaca attctcgatt tccacagaga 841 ttagccgtat gacaaaggag ccagcacaga accagcgggc attgtcaatc actgaccaac 901 tgtccgtgga agtgaccctt ttgtccgcat ttcgaagccg gtacagtcgt gctttattga 961 tttcgagcga tctctttcgc tcccatcatt gcattctcaa tcgagtcgat cgatggccga 1021 acccttgtgt gtttatagtc tagccacttt ctcataatca actaggagtg ttacctctaa 1081 aaatgatcat gattgcaatc tcaaacttgg agcagttaat tttgttgtac tggttttctt 1141 taagcgacat atctaactct ttcacttctt tgccagccat ccagtgcagc tatgagaccg 1201 ccgtccgtgg aatggcatcg ctgcagcaga tgcaccgcag cggaccgcac ataaagacgc 1261 gtccgccgcg ccagccgctg gatggaaagc ccttcgccaa gggcgttgtc ctgaagacgc 1321 tgataaagaa gcccaagaag ccgaactcgg ccaatcgaaa gtgcgtgctg gtgcgcctct 1381 ccaccggcaa ggagatggtg gcctacatcc ccggcatcgg gcacaacctg caagagcaca 1441 acattgtact gtgccgcgtg gggcgtctgc aggacgtgcc cggcgttaag ctgaaggctg 1501 tgcgcggagt ctacgacttg gcgcacgtcg tcaagaagag ccaatagtta ataaccactt 1561 cctaatcacg ttgttcaaat gcattgcttc acaatc