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LOCUS NM_001258544 2867 bp mRNA linear INV 26-DEC-2023 transcript variant M (Adar), mRNA. ACCESSION NM_001258544 VERSION NM_001258544.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2867) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2867) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2867) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2867) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2867) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2867) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2867) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2867) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2867) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2867) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2867) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2867) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2867) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2867) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2867) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2867) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2867) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2867) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2867) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2867) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2867) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2867) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2867) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001258544.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2867 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2867 /gene="Adar" /locus_tag="Dmel_CG12598" /gene_synonym="adar; ADAR; ADAR1; adr; cg12598; CG12598; dadar; dAdar; dADAR; Dmel\CG12598; EG:BACN35H14.1; hypnos-2" /note="Adenosine deaminase acting on RNA" /map="2B9-2B9" /db_xref="FLYBASE:FBgn0026086" /db_xref="GeneID:31130" CDS 648..1214 /gene="Adar" /locus_tag="Dmel_CG12598" /gene_synonym="adar; ADAR; ADAR1; adr; cg12598; CG12598; dadar; dAdar; dADAR; Dmel\CG12598; EG:BACN35H14.1; hypnos-2" /EC_number="3.5.4.37" /EC_number="3.5.4.4" /note="CG12598 gene product from transcript CG12598-RM; CG12598-PM; Adar-PM; hypoxia, anoxia, sensitive 2; adenosine deaminase acting on rna; hypnos-2; adenosine deaminases acting on RNA" /codon_start=1 /product="adenosine deaminase acting on RNA, isoform M" /protein_id="NP_001245473.1" /db_xref="FLYBASE:FBpp0301692" /db_xref="GeneID:31130" /db_xref="FLYBASE:FBgn0026086" /translation="MKFECFSLYCTVLKPVSAPSDINMNGYNRKLPQKRGYEMPKYSD PKKKMCKERIPQPKNTVAMLNELRHGLIYKLESQTGPVHAPLFTISVEVDGQKYLGQG RSKKVARIEAAATALRSFIQFKDGAVLSPLKPAGNLDFTSDEHLENGIENLSSSKMFE IIQTMLTEKLSNPTSLEQPTFCMSQSKY" misc_feature 819..1007 /gene="Adar" /locus_tag="Dmel_CG12598" /gene_synonym="adar; ADAR; ADAR1; adr; cg12598; CG12598; dadar; dAdar; dADAR; Dmel\CG12598; EG:BACN35H14.1; hypnos-2" /note="first double-stranded RNA binding motif of STRBP, ILF3, RED1, RED2 and similar proteins; Region: DSRM_STRBP_RED-like_rpt1; cd19865" /db_xref="CDD:380694" misc_feature order(819..821,828..833,840..845,849..851,891..896, 900..902,906..908,957..965,972..974) /gene="Adar" /locus_tag="Dmel_CG12598" /gene_synonym="adar; ADAR; ADAR1; adr; cg12598; CG12598; dadar; dAdar; dADAR; Dmel\CG12598; EG:BACN35H14.1; hypnos-2" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:380694" ORIGIN 1 tattgtgata actgctcaca tcgctagatt ccgagcaaca aaaaagcgac gaagggtcat 61 tgttattttt tctaatgcaa tgtaatgcag caaatgtgca gatttgaaca agtgtaacgc 121 gatttatgtt taatccgcat cgaggaacca aatcgaagta aacgcgcggc cagagaaaag 181 agcagcaccg caccgaagat aaaacaaaca agcattgatt tgtttgtccg gccatgtcag 241 tgtgtgtgtc acaagggctt gcaagtgtgt gcgtgtgtcc gtgcgtgtac gtgggtgctt 301 ttttttttct cccgagtgcc gccaagtgaa atatgcaatt gcacgccact gcagttgcag 361 ccacacaaat cctatcctaa tcgacgaaac agcgaagcga ggaggctaga atcggctgcc 421 caacgaagag agcagaaccg ttaacaaatg acactctgcc gatacagcga agtaaaaatc 481 aataattaga gcaaaaagaa gtgcataatt caattcggca atatttgata tatatggtaa 541 tatcaaatga agaaccgtgt caatgatact tgctttggtg ccataaaaag caagtcctct 601 agaagacgcg agttactaca tgcctacaca caaaacgggt ccttaaaatg aagtttgaat 661 gcttttcgtt gtactgtaca gtgttaaaac cggtgagtgc accatccgat atcaacatga 721 atggctataa ccgaaaattg ccacaaaaac gtggctatga gatgccaaaa tactctgatc 781 caaaaaagaa aatgtgcaag gagcgcattc cccagccgaa gaacacggtg gccatgctga 841 atgagctaag acatggactg atttacaaat tggagtcaca gactggtccg gtacacgcac 901 ctctattcac gatatccgtg gaggtcgatg gacagaaata cttgggccag ggccgtagta 961 aaaaagttgc acgcatcgaa gcagcagcaa ctgcactgcg cagctttata cagtttaagg 1021 atggagcagt tctgtcgcct ctgaagccgg cgggcaactt ggactttacc agcgatgaac 1081 atcttgaaaa tggtattgaa aatttgtcca gttcaaaaat gtttgagatc attcagacga 1141 tgttgactga aaagctatcc aaccctacct cgcttgaaca acccacgttt tgcatgagtc 1201 agagcaagta ttagtgtttt tatcctcttt tgttaattat tttaatttat tatttaatat 1261 aatttattct ggaaccttat gcgttgtggc catatcaaag atgtctccat tcatctaata 1321 gcaatgtttt ggccgaatat ccaatagtat cggccatgtc acaaaatcaa ttgttatcaa 1381 tgattttaag caaatatgta tgtttaaagt gccgtaaggt tcgcaatgtt gattttggta 1441 tcgtttgtgt tatttgtatg agagcacaca cagctcattt ggactgaagt ttttataggc 1501 caaagagaat gctttttact tactgaaccc atttttaata aataacccaa caatcggcta 1561 ctaaaaggcc tcggtgtact tgagtcctgt ttttctcttg tttttttttt tttttttttt 1621 ttttcctttt attaatgcgc cttattcagc acattatgct taatagagca accaattctg 1681 tgcttcagtg tcgtacgctt acttaaattg actttcattg gttgatctct acgtttttat 1741 aagtttcttg tgtttcttgt tcattgttcc cctcgcgttt gtctgatatg gctagagacc 1801 actattgcgt ctgaaataag attagaaaac taaggcgtag cttcagagtg acgagcagtc 1861 aaatatcccc agctaatttt gttttatatt gctagatgtc agcaaaagtg ctattactgt 1921 tgacggtcag aagaaggttc cagataaggg tcctgtcatg ctcctctacg aattatttaa 1981 tgacgttaat ttcgaatgca ttaatattga cggcgcccag aacaattgtc gcttcaaaat 2041 gaccgtcaca atcaacgaaa agaagttcga tggaacaggt ccttccaaaa agacggcgaa 2101 aaatgcggca gctaaggcgg cacttgcttc gttatgcaat atttcctaca gtccaatggt 2161 ggtgccacag aagaacgtac ccctgccaat cgacgacaag tcgtcatcga tggagttgcc 2221 tcagatacac gcggatacga ttggtcggtt ggtcttagaa aagttcatgg aagtaatcaa 2281 gggccaggag gcttactcgc gtcgaaaggt attagcgggc attgtaatga ctgaaaacat 2341 gaatttttgt gaagccaaag ttatttcagt ttcgacgggc accaagtgtg tcagcggtga 2401 gcatatgagt gtgaacggag ctgtcctaaa tgattcccat gctgaaatag tctccaggcg 2461 ttgtcttctc aaatatttat atgcacagct ggaccttcag tgcaatcagg gtatagttgt 2521 ttgatgtata tgctaagttc agtttacgta tactaataat accatagaac ttaaatctaa 2581 gagtaatgca taatctagtt gttaaatgtt gatatcgaaa atgtacgctt taccagcaag 2641 aattgcctac atagaagcta aagttccgat ttgtgctcat taaccgtata cgagcacaaa 2701 cttttatttt ttctttcttt tacacattat aaacaagcac tttaagctaa cttatgtttt 2761 ccccgtctga tcgttttaga aggtgtttat acaaaattaa attttaaggg caaaccatct 2821 taaaaataaa caatttgtaa acattatcaa atctaagcac aaacatt