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LOCUS NM_001258529 3609 bp mRNA linear INV 26-DEC-2023 transcript variant J, mRNA. ACCESSION NM_001258529 VERSION NM_001258529.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3609) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3609) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3609) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3609) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3609) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3609) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3609) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3609) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3609) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3609) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3609) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3609) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3609) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3609) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3609) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3609) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3609) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3609) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3609) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3609) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3609) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3609) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3609) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001258529.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3609 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3609 /gene="su(w[a])" /locus_tag="Dmel_CG3019" /gene_synonym="CG3019; Dmel\CG3019; DmSWAP; EG:BACR7A4.10; su(w); su(wa); Su(w[a]); su(w[a])-1; su(w[a])-2; su-w; su[wa]; SWAP" /note="suppressor of white-apricot" /map="1E1-1E1" /db_xref="FLYBASE:FBgn0003638" /db_xref="GeneID:31054" CDS 216..776 /gene="su(w[a])" /locus_tag="Dmel_CG3019" /gene_synonym="CG3019; Dmel\CG3019; DmSWAP; EG:BACR7A4.10; su(w); su(wa); Su(w[a]); su(w[a])-1; su(w[a])-2; su-w; su[wa]; SWAP" /note="CG3019 gene product from transcript CG3019-RJ; CG3019-PJ; su(w[a])-PJ; suppressor of apricot" /codon_start=1 /product="suppressor of white-apricot, isoform J" /protein_id="NP_001245458.1" /db_xref="FLYBASE:FBpp0296932" /db_xref="GeneID:31054" /db_xref="FLYBASE:FBgn0003638" /translation="MLPYNVRNAGGGSVGGILRRTGQGSGTGSTILGNGNSPGALGAG KVSSSLENHRQPPLELLVFGYACKIFRDDEKAREMDHGKQLIPWMGDVNLKIDRYDVR GALCELAPHEAPPGGYGNRLEYLSAEEQRAEQLCEEERYLFLYNNEEELRLRQVPITS NPTIEKDTTDIPSIFPASPFLEQVNT" misc_feature 393..>683 /gene="su(w[a])" /locus_tag="Dmel_CG3019" /gene_synonym="CG3019; Dmel\CG3019; DmSWAP; EG:BACR7A4.10; su(w); su(wa); Su(w[a]); su(w[a])-1; su(w[a])-2; su-w; su[wa]; SWAP" /note="Alternative splicing regulator; Region: DRY_EERY; pfam09750" /db_xref="CDD:462881" ORIGIN 1 ccacctctag cataatatat gtactacatt tatacaaata taaatataat ggaaatatga 61 gaatttaacc aaacaccgcc cgaaatatga gatcctccga gcacagatcc tagcaatcga 121 tctcctcata aagtgagtga gtcgcaagag acgaagggag cgagagagag aaaggagcac 181 ttaaattgca cattcgctgc tgtttgtccg ccgcgatgct gccctacaat gtgcgaaacg 241 ccggtggcgg aagcgttggc ggaatcctgc ggcgcacggg ccaaggttcg ggcaccggaa 301 gcacgattct tggcaatgga aacagtccgg gagcactagg agccggaaaa gtgtcctcca 361 gcctggaaaa ccacagacaa ccgccgttgg aactcctcgt gtttggctac gcctgcaaga 421 ttttccgcga tgacgagaag gcgcgggaaa tggaccacgg caagcagttg attccctgga 481 tgggcgatgt aaatctcaag attgacagat acgatgtgcg tggagccctc tgcgaactgg 541 caccgcacga ggcgccacca ggcggatacg gtaaccggct ggagtacttg agtgccgagg 601 agcagcgcgc cgagcagctg tgcgaggagg agcggtacct gtttctgtac aataacgagg 661 aggagctgcg actgcgacaa gtaccaatca catcaaatcc aaccatcgaa aaagatacca 721 ccgacatccc ctcgatattt ccagcgagtc cgttcttgga gcaggtaaat acgtaatcct 781 cactacctga cagaataaat cgtttctttc aggttgtatt agctggagcg ccttcttggg 841 cgtgtgttgt cagggatcca aatgcatgat cagcttgccg gggaaggctc aggatcaagc 901 gatttttgat atccagcacc ttcctctatc tctttctctc tgtatctctc tcttgttcgc 961 atcaactcga atacgtttct ctcgctctga ttcgaattag ttattgctgc cacccctctc 1021 ctcccgtact aaaatcgcac atcttcgtgt gttctctgct cttattttgg cccaattcgc 1081 tgatcctgca gaggaggacc tcaagcgact gcagcaggaa acctcgggcg gctgcttcag 1141 ccaggtgggc tttcagtacg atggccagtc ggcagcctcc acttccatcg gtggctcctc 1201 aacggcgacc tcccagctct cgccgaactc cgaggagagc gagctgcctt tcgtccttcc 1261 ctacaccctg atgatggcac cacccttgga catgcagctg cccgaaacga tgaagcagca 1321 cgctatcata gagaagactg ctcgctttat cgcaacccag ggcgcccaaa tggaaattct 1381 tatcaaggca aagcaggcga acaacacgca gttcgatttc ctgacccaag gtggacatct 1441 gcagccttac taccgtcacc ttttggctgc tatcaaggcg gccaagttcc cgcccgcacc 1501 acaaactccg ttggatcagc agaatacaga caaggaagca ccctcagcgg acgaccacag 1561 cgaggaagtc gcgggtggaa ggaggaaccc caaccaagtg gtcatcacgg tgcccaccat 1621 caagtacaag ccctcggcca actgcgccta cacccagcta attagcaaga tcaagggcgt 1681 gcccctccaa gcggtcttgc aggaggacga gtcaagcaat ccgggcaact cgcagcactc 1741 gggcggcacg gcctcgcccg cacttagctg tcgatccgaa ggtcacaaca gccagggagg 1801 tgagttcaca cccgtattgc tgcagtacaa cgggagcacc ttcacacacg aggaggaatc 1861 gtcgaaccgg gagcagcagg atgataacga tgtcaacggt ggcgagccgc cccaggtgga 1921 gctgcttaag aacacgagtg cgctggcgtt ggcccaaaac tatagttcag aaagtgagga 1981 ggaggaagat caagttcagc cagaaaagga agaggaaaag aaaccagagc ccgtgcttac 2041 cttccccgtt ccgaaggaca gtctaaggca cataatcgac aagacggcca cgtacgtaat 2101 caagaacgga cgccaattcg aggagaccct tcgcacgaag agcgtggatc ggtttagttt 2161 cttgctgccg gccaatgagt actatccata ctacttgtac aaagtgaccg gcgatgtgga 2221 tgcggcttcc aaggaggaga aaactaggaa agcagcagcc gtagctgccg ccctgatgtc 2281 aaagaagggt cttagttttg gaggagcagc agctgcagtg agtggaagca atctggataa 2341 ggctcctgta agtttctcca ttcgggctcg cgatgaccaa tgtccattgc aacacacttt 2401 accgcaggag gccagcgacg aggagactag ttcgaatgct gctggggtgg agcatgtgcg 2461 accaggtatg ccagatagtg tgcaacgggc catcaaacag gttgagacgc agttgttggc 2521 caggaccgcc gggcagaagg gaaacatcac ggcttcccca tcctgttcct caccacaaaa 2581 agagcagcgg caagctgagg agcgtgttaa ggataagctg gcgcagattg cccgcgagaa 2641 gctgaacgga atgatttcac gcgaaaaaca attgcagttg gaacgaaagc gaaaggcctt 2701 ggcctttcta aatcagataa aaggtgaggg tgccattgtg ggctctgctg tgcctgttgt 2761 tggtccgaat cctccagagt cagcggccgg agctgcgacc gccgacagtg gtgacgagtc 2821 tggtgattct gtacgttcca taccaattac ctactttggc cccgacgacg atgacgaagt 2881 cggtgaacag aggcctgaga tgaggctcat agggagcacg cagaaggacg aggaggacga 2941 cgatgaagag gatggcggcg atctggagaa gtacaacttg ctcaacgacg atagcacgaa 3001 caccttcacc agcaaacccg tgcttcctcc caccgctgct ccacctcctg ctgctgttct 3061 gctttctgac gacgacgacg tccagcttgt ggccactacc tcaacgcggt cctccagctc 3121 gcgccatctc aaaacccacc gccggagcag aagtcgcagt aagaatgtcc gaagcagtga 3181 cagcagccct tctagtcgag agtcctcgcg ccgacgccgc cagaagagca gcaggctttc 3241 cagggagcca tcatcgaacc cgccacgtaa gtcccagcat tcgtcaacgc agcgaaaaaa 3301 gacccccaaa aagaggaggc gcagcaaaag tagaagtcgc tctaaaagca tccggcggag 3361 taggagcata agcatattga gaaacaaccg gcggagcaga tcgcgtagcc ccagctgtcg 3421 aaatgcagaa cagcgacgcc agcaggaccg acggcgcact cccactaaaa agtcccacaa 3481 gcggcacaag cgacgcaggc gcagcagctc cccctgagaa tcttcctaga gctccgcaac 3541 cacctccaca tttcaaagtt tttttgtagg ttacaagttg tatcaaataa acccccaaca 3601 tatttttgt