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LOCUS NM_001258528 3478 bp mRNA linear INV 26-DEC-2023 transcript variant I, mRNA. ACCESSION NM_001258528 VERSION NM_001258528.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3478) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3478) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3478) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3478) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3478) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3478) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3478) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3478) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3478) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3478) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3478) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3478) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3478) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3478) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3478) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3478) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3478) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3478) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3478) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3478) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3478) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3478) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3478) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001258528.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3478 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3478 /gene="su(w[a])" /locus_tag="Dmel_CG3019" /gene_synonym="CG3019; Dmel\CG3019; DmSWAP; EG:BACR7A4.10; su(w); su(wa); Su(w[a]); su(w[a])-1; su(w[a])-2; su-w; su[wa]; SWAP" /note="suppressor of white-apricot" /map="1E1-1E1" /db_xref="FLYBASE:FBgn0003638" /db_xref="GeneID:31054" CDS 216..869 /gene="su(w[a])" /locus_tag="Dmel_CG3019" /gene_synonym="CG3019; Dmel\CG3019; DmSWAP; EG:BACR7A4.10; su(w); su(wa); Su(w[a]); su(w[a])-1; su(w[a])-2; su-w; su[wa]; SWAP" /note="CG3019 gene product from transcript CG3019-RI; CG3019-PI; su(w[a])-PI; suppressor of apricot" /codon_start=1 /product="suppressor of white-apricot, isoform I" /protein_id="NP_001245457.1" /db_xref="FLYBASE:FBpp0296931" /db_xref="GeneID:31054" /db_xref="FLYBASE:FBgn0003638" /translation="MLPYNVRNAGGGSVGGILRRTGQGSGTGSTILGNGNSPGALGAG KVSSSLENHRQPPLELLVFGYACKIFRDDEKAREMDHGKQLIPWMGDVNLKIDRYDVR GALCELAPHEAPPGGYGNRLEYLSAEEQRAEQLCEEERYLFLYNNEEELRLRQGCISW SAFLGVCCQGSKCMISLPGKAQDQAIFDIQHLPLSLSLCISLLFASTRIRFSRSDSN" misc_feature 393..>665 /gene="su(w[a])" /locus_tag="Dmel_CG3019" /gene_synonym="CG3019; Dmel\CG3019; DmSWAP; EG:BACR7A4.10; su(w); su(wa); Su(w[a]); su(w[a])-1; su(w[a])-2; su-w; su[wa]; SWAP" /note="Alternative splicing regulator; Region: DRY_EERY; pfam09750" /db_xref="CDD:462881" ORIGIN 1 ccacctctag cataatatat gtactacatt tatacaaata taaatataat ggaaatatga 61 gaatttaacc aaacaccgcc cgaaatatga gatcctccga gcacagatcc tagcaatcga 121 tctcctcata aagtgagtga gtcgcaagag acgaagggag cgagagagag aaaggagcac 181 ttaaattgca cattcgctgc tgtttgtccg ccgcgatgct gccctacaat gtgcgaaacg 241 ccggtggcgg aagcgttggc ggaatcctgc ggcgcacggg ccaaggttcg ggcaccggaa 301 gcacgattct tggcaatgga aacagtccgg gagcactagg agccggaaaa gtgtcctcca 361 gcctggaaaa ccacagacaa ccgccgttgg aactcctcgt gtttggctac gcctgcaaga 421 ttttccgcga tgacgagaag gcgcgggaaa tggaccacgg caagcagttg attccctgga 481 tgggcgatgt aaatctcaag attgacagat acgatgtgcg tggagccctc tgcgaactgg 541 caccgcacga ggcgccacca ggcggatacg gtaaccggct ggagtacttg agtgccgagg 601 agcagcgcgc cgagcagctg tgcgaggagg agcggtacct gtttctgtac aataacgagg 661 aggagctgcg actgcgacaa ggttgtatta gctggagcgc cttcttgggc gtgtgttgtc 721 agggatccaa atgcatgatc agcttgccgg ggaaggctca ggatcaagcg atttttgata 781 tccagcacct tcctctatct ctttctctct gtatctctct cttgttcgca tcaactcgaa 841 tacgtttctc tcgctctgat tcgaattagt tattgctgcc acccctctcc tcccgtacta 901 aaatcgcaca tcttcgtgtg ttctctgctc ttattttggc ccaattcgct gatcctgcag 961 aggaggacct caagcgactg cagcaggaaa cctcgggcgg ctgcttcagc caggtgggct 1021 ttcagtacga tggccagtcg gcagcctcca cttccatcgg tggctcctca acggcgacct 1081 cccagctctc gccgaactcc gaggagagcg agctgccttt cgtccttccc tacaccctga 1141 tgatggcacc acccttggac atgcagctgc ccgaaacgat gaagcagcac gctatcatag 1201 agaagactgc tcgctttatc gcaacccagg gcgcccaaat ggaaattctt atcaaggcaa 1261 agcaggcgaa caacacgcag ttcgatttcc tgacccaagg tggacatctg cagccttact 1321 accgtcacct tttggctgct atcaaggcgg ccaagttccc gcccgcacca caaactccgt 1381 tggatcagca gaatacagac aaggaagcac cctcagcgga cgaccacagc gaggaagtcg 1441 cgggtggaag gaggaacccc aaccaagtgg tcatcacggt gcccaccatc aagtacaagc 1501 cctcggccaa ctgcgcctac acccagctaa ttagcaagat caagggcgtg cccctccaag 1561 cggtcttgca ggaggacgag tcaagcaatc cgggcaactc gcagcactcg ggcggcacgg 1621 cctcgcccgc acttagctgt cgatccgaag gtcacaacag ccagggaggt gagttcacac 1681 ccgtattgct gcagtacaac gggagcacct tcacacacga ggaggaatcg tcgaaccggg 1741 agcagcagga tgataacgat gtcaacggtg gcgagccgcc ccaggtggag ctgcttaaga 1801 acacgagtgc gctggcgttg gcccaaaact atagttcaga aagtgaggag gaggaagatc 1861 aagttcagcc agaaaaggaa gaggaaaaga aaccagagcc cgtgcttacc ttccccgttc 1921 cgaaggacag tctaaggcac ataatcgaca agacggccac gtacgtaatc aagaacggac 1981 gccaattcga ggagaccctt cgcacgaaga gcgtggatcg gtttagtttc ttgctgccgg 2041 ccaatgagta ctatccatac tacttgtaca aagtgaccgg cgatgtggat gcggcttcca 2101 aggaggagaa aactaggaaa gcagcagccg tagctgccgc cctgatgtca aagaagggtc 2161 ttagttttgg aggagcagca gctgcagtga gtggaagcaa tctggataag gctcctgtaa 2221 gtttctccat tcgggctcgc gatgaccaat gtccattgca acacacttta ccgcaggagg 2281 ccagcgacga ggagactagt tcgaatgctg ctggggtgga gcatgtgcga ccaggtatgc 2341 cagatagtgt gcaacgggcc atcaaacagg ttgagacgca gttgttggcc aggaccgccg 2401 ggcagaaggg aaacatcacg gcttccccat cctgttcctc accacaaaaa gagcagcggc 2461 aagctgagga gcgtgttaag gataagctgg cgcagattgc ccgcgagaag ctgaacggaa 2521 tgatttcacg cgaaaaacaa ttgcagttgg aacgaaagcg aaaggccttg gcctttctaa 2581 atcagataaa aggtgagggt gccattgtgg gctctgctgt gcctgttgtt ggtccgaatc 2641 ctccagagtc agcggccgga gctgcgaccg ccgacagtgg tgacgagtct ggtgattctg 2701 tacgttccat accaattacc tactttggcc ccgacgacga tgacgaagtc ggtgaacaga 2761 ggcctgagat gaggctcata gggagcacgc agaaggacga ggaggacgac gatgaagagg 2821 atggcggcga tctggagaag tacaacttgc tcaacgacga tagcacgaac accttcacca 2881 gcaaacccgt gcttcctccc accgctgctc cacctcctgc tgctgttctg ctttctgacg 2941 acgacgacgt ccagcttgtg gccactacct caacgcggtc ctccagctcg cgccatctca 3001 aaacccaccg ccggagcaga agtcgcagta agaatgtccg aagcagtgac agcagccctt 3061 ctagtcgaga gtcctcgcgc cgacgccgcc agaagagcag caggctttcc agggagccat 3121 catcgaaccc gccacgtaag tcccagcatt cgtcaacgca gcgaaaaaag acccccaaaa 3181 agaggaggcg cagcaaaagt agaagtcgct ctaaaagcat ccggcggagt aggagcataa 3241 gcatattgag aaacaaccgg cggagcagat cgcgtagccc cagctgtcga aatgcagaac 3301 agcgacgcca gcaggaccga cggcgcactc ccactaaaaa gtcccacaag cggcacaagc 3361 gacgcaggcg cagcagctcc ccctgagaat cttcctagag ctccgcaacc acctccacat 3421 ttcaaagttt ttttgtaggt tacaagttgt atcaaataaa cccccaacat atttttgt