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LOCUS NM_001169266 2232 bp mRNA linear INV 26-DEC-2023 (CkIalpha), mRNA. ACCESSION NM_001169266 VERSION NM_001169266.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2232) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2232) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2232) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2232) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2232) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2232) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2232) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2232) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2232) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2232) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2232) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2232) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2232) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2232) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2232) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2232) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2232) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2232) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2232) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2232) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2232) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2232) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2232) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001169266.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2232 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2232 /gene="CkIalpha" /locus_tag="Dmel_CG2028" /gene_synonym="anon-WO03040301.93; anon-WO03040301.95; CG2028; CK I; CK1; ck1a; Ck1a; CK1a; ck1alpha; Ck1alpha; CK1alpha; ckI; CKI; CkI alpha; CKI alpha; CkIa; CKIa; ckIalpha; CKIalpha; dmCK1; dmckI; Dmel\CG2028; l(1)G0492; PKA-C" /note="Casein kinase Ialpha" /map="11B7-11B8" /db_xref="FLYBASE:FBgn0015024" /db_xref="GeneID:32221" CDS 437..1450 /gene="CkIalpha" /locus_tag="Dmel_CG2028" /gene_synonym="anon-WO03040301.93; anon-WO03040301.95; CG2028; CK I; CK1; ck1a; Ck1a; CK1a; ck1alpha; Ck1alpha; CK1alpha; ckI; CKI; CkI alpha; CKI alpha; CkIa; CKIa; ckIalpha; CKIalpha; dmCK1; dmckI; Dmel\CG2028; l(1)G0492; PKA-C" /EC_number="2.7.11.1" /note="CG2028 gene product from transcript CG2028-RD; CG2028-PD; CkIalpha-PD; casein kinase I; casein kinase ialpha; casein kinase 1alpha; casein kinase-1; caesin kinase I alpha" /codon_start=1 /product="casein kinase ialpha, isoform D" /protein_id="NP_001162737.1" /db_xref="FLYBASE:FBpp0289609" /db_xref="GeneID:32221" /db_xref="FLYBASE:FBgn0015024" /translation="MDKMRILKESRPEIIVGGKYRVIRKIGSGSFGDIYLGMSIQSGE EVAIKMESAHARHPQLLYEAKLYRILSGGVGFPRIRHHGKEKNFNTLVMDLLGPSLED LFNFCTRHFTIKTVLMLVDQMIGRLEYIHLKCFIHRDIKPDNFLMGIGRHCNKLFLID FGLAKKFRDPHTRHHIVYREDKNLTGTARYASINAHLGIEQSRRDDMESLGYVMMYFN RGVLPWQGMKANTKQQKYEKISEKKMSTPIEVLCKGSPAEFSMYLNYCRSLRFEEQPD YMYLRQLFRILFRTLNHQYDYIYDWTMLKQKTHQGQPNPAILLEQLDKDKEKQNGKPL IAD" misc_feature 491..1288 /gene="CkIalpha" /locus_tag="Dmel_CG2028" /gene_synonym="anon-WO03040301.93; anon-WO03040301.95; CG2028; CK I; CK1; ck1a; Ck1a; CK1a; ck1alpha; Ck1alpha; CK1alpha; ckI; CKI; CkI alpha; CKI alpha; CkIa; CKIa; ckIalpha; CKIalpha; dmCK1; dmckI; Dmel\CG2028; l(1)G0492; PKA-C" /note="The protein kinase superfamily is mainly composed of the catalytic domains of serine/threonine-specific and tyrosine-specific protein kinases. It also includes RIO kinases, which are atypical serine protein kinases, aminoglycoside phosphotransferases; Region: Protein Kinases, catalytic domain; cl21453" /db_xref="CDD:473864" misc_feature order(512..523,530..532,536..538,575..577,581..583, 665..667,713..724,851..853,863..868,872..874,911..916) /gene="CkIalpha" /locus_tag="Dmel_CG2028" /gene_synonym="anon-WO03040301.93; anon-WO03040301.95; CG2028; CK I; CK1; ck1a; Ck1a; CK1a; ck1alpha; Ck1alpha; CK1alpha; ckI; CKI; CkI alpha; CKI alpha; CkIa; CKIa; ckIalpha; CKIalpha; dmCK1; dmckI; Dmel\CG2028; l(1)G0492; PKA-C" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270870" ORIGIN 1 atatcaggtg gcagtgtttg gttgaaccta tcgggcccta tcgatataag caaaagcatt 61 tttgctggat ctaccatttt attttagtta ataaaataca tatatttcct ctctttttgt 121 tccgtttgtg cgcgtacaaa actagctgcg aactcgtgca atatttcata aactgaatgg 181 gaaaacaacg ataacgacga aagaaaacga aaacggatct gcgacgaaat tttccccgtt 241 ccgttttttt ttctccacca gcagcagaag cagcagagca aaagcagcga atatatttgt 301 aaaagagagc cccaaccttg agaaaaaaca accagcaggg caataattag ttgaatttat 361 cgtctgctgt ttttcaagtg aacgcgtcca actgtttttg aagcgaagcg cttaggcgga 421 ggagcagcta gccaggatgg acaagatgcg gatattgaag gaaagtcgcc ccgagataat 481 cgtcggtggc aaatatcggg tgatcaggaa gattggaagc ggatcgtttg gcgacattta 541 cctgggcatg agcatccaga gcggcgaaga agtggccatc aagatggaga gcgcccacgc 601 ccgccatccg cagctgttgt acgaggccaa gctgtaccgc attctgagcg gcggcgttgg 661 attccctcgt atacgtcacc atggcaagga aaagaacttc aacaccctgg tcatggacct 721 gctgggaccc tcgctggagg atctgttcaa tttctgtacg cgccatttca caatcaaaac 781 ggttctgatg ctcgtcgacc agatgatcgg acgcttggag tacatccatc tcaagtgctt 841 catccatcgc gacatcaagc cggataactt cctaatgggc attggtcggc actgcaataa 901 gctgttcctg atcgatttcg gtctggccaa gaagttccgc gatccgcaca cgcgccatca 961 catcgtttac cgcgaggaca agaacctcac cggcactgcc cgctatgcct cgatcaatgc 1021 ccatctgggc atcgagcagt cgcggcgtga cgacatggaa tcgcttggat acgtgatgat 1081 gtacttcaat cgcggcgtac tgccatggca aggcatgaag gccaacacca agcagcagaa 1141 atacgagaag atctccgaaa agaagatgtc cacgcccatc gaggtcctct gcaagggctc 1201 gccggccgag ttctccatgt atctgaacta ttgtcgtagc ctgcgcttcg aggagcagcc 1261 agattacatg tacctacgtc aattgttccg catactgttc agaacgctga accatcagta 1321 tgactacatc tacgactgga caatgctgaa gcagaagacc catcagggtc aacccaatcc 1381 agctatactc ttggagcaat tggacaagga caaggagaag cagaacggca agcccctgat 1441 cgcggactaa gagctgcagc gcattcagac gaatgggggg agtgcatcag agaaggagaa 1501 cgtggatgcg tggatgtaaa tgacgttgat gtgggcgaaa ggcccggcaa ggagcggagc 1561 aaatatgaaa cagacgcaac cgtaaaattg agtaacacca gcggtcgtcc gaatgtttct 1621 taatattaat ttaaattcaa tactaaacaa ataaggaacc acaaacaagc aagcaacggc 1681 atcatcagca gggcatataa aatgataccc cagcaaatgt gattcacgag tgaatcactg 1741 cgatcgataa taacataaac cgaaattatt gcaaatcaat acgatttaaa ctaatttgca 1801 atccatacac aaatcaacat acttgcataa cacacccaca cacacacata catacacaca 1861 ctcacccact ctcatccacc cactcaaaaa gcaaacatca ttgcccaaaa gggggagaaa 1921 aaagaaaaga agagagaaga agaaaagaag aggaaagaaa tcaacaacac ttagcctaat 1981 aaattacaag aaataatatt ggtagagttg gaggaacaaa atgaagtaat gctgaggaaa 2041 ctaaacctat atatatatgt atatgtatat atgtaagcga ataaacacaa caccatatat 2101 gtatgcatat acccatttga ttcacgtcaa atcgaatcca atgcttaatt atgaatcgag 2161 cgaaacaaaa ctcaataact aattaaaatg gaataaataa gaaacaaaac agcaacaagc 2221 aaacaacaac ac