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LOCUS NM_001169255 3113 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_001169255 VERSION NM_001169255.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3113) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3113) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3113) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3113) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3113) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3113) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3113) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3113) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3113) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3113) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3113) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3113) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3113) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3113) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3113) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3113) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3113) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3113) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3113) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3113) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3113) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3113) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3113) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3113 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3113 /gene="inaF-B" /locus_tag="Dmel_CG42447" /gene_synonym="CG42447; Dmel\CG42447; inaF; InaF; INAF; INAF-B" /map="10D8-10E1" /db_xref="FLYBASE:FBgn0259918" /db_xref="GeneID:8674114" CDS 109..354 /gene="inaF-B" /locus_tag="Dmel_CG42447" /gene_synonym="CG42447; Dmel\CG42447; inaF; InaF; INAF; INAF-B" /note="CG42447 gene product from transcript CG42447-RA; CG42447-PA; inaF-B-PA" /codon_start=1 /product="inaF-B" /protein_id="NP_001162726.1" /db_xref="FLYBASE:FBpp0289437" /db_xref="GeneID:8674114" /db_xref="FLYBASE:FBgn0259918" /translation="MSGPSALMANLADVVKEAKDEEIPMPKSNDFFESKTFRLLTLLL YMGGVSGMGLTLAVYYLFIWDSRMPPLPVFKHTHPIG" misc_feature 208..312 /gene="inaF-B" /locus_tag="Dmel_CG42447" /gene_synonym="CG42447; Dmel\CG42447; inaF; InaF; INAF; INAF-B" /note="TRP-interacting helix; Region: InaF-motif; pfam15018" /db_xref="CDD:464449" ORIGIN 1 aattgtgttc agttcgttcg aagaggcggt tacggttgcg attggccacc tttttccata 61 tcgcttgggt cattcagcac attctcgaaa taaataagaa gcggcataat gagcggaccg 121 tcggcactga tggccaatct ggccgatgta gtcaaggagg ccaaggatga ggagatcccg 181 atgcccaaat cgaatgactt cttcgagtct aagaccttcc gcctgctcac cctgttgctc 241 tacatgggcg gcgttagcgg catgggcttg actctggctg tctactacct gttcatctgg 301 gattcacgca tgccgccgct gcccgtgttc aagcacacgc atccgattgg ctaggatcgg 361 atggctatca tttagttagc catccatctc ccagcgacat cagtgaccgg aattggataa 421 aattgtgata cccgagaaaa tagccattcg cctcctgaac tcatcggaag tgaccgcgga 481 gcagttctac aagcacatcc tcgagcagta ccgcatcctc agccacatgc aacagcagcg 541 ccagcaactg ctgcagcgcc aacatctcca actgcagcag ctggaggcaa acaatcgctt 601 ccaggaggtc tttgccacgg ccaccatcat tcaggcacat ccgcatcccc atccacatcc 661 cagggagccg cccaagaagc cgcttttagg accatatagc ccgcaacccg gcaacataag 721 tcacgctatg ggtggtgatc agttggatgc agaaacggag cagggtcaca tgcctctaat 781 cctggatacc tcaccgccgg tcgaagtaac cggaatgggt cacctgaagc ggaagacaca 841 tcgcggtcac tacaaacatc atagagcccg agccggtggt caaaagaaac tgtccattgc 901 caattcgatg gccagctcca cgccgagcac cacagccgga ggagatgcgt caatggccac 961 tgcggccact ttgccacatg gttatatgga cgctccacta aatccggcgg caggaaccat 1021 tgtccaggca ccacaactgc agctatacac ctcgatgccc attccactga tcctgagtcc 1081 cagcgacgaa aagcgtcctt cgcaccacgc ccacggacat gtccatggcg agaggcggaa 1141 cggggcgcaa tccggcggcc ggcgaaggac cacgacggca tcggtttctg gctacgaggc 1201 gcagacctac ctcaatccgt ttctcaccgg cgagctgatc ttcgagaagt aagggactgc 1261 acccagatca ggaaacgtcg cggttcattg tttttttttt tttttttttt taatgcatgt 1321 agagggatat acactacagt caagatcgga attggagatt agctcataga aatggtaact 1381 gcccaagaaa caaaaaaaga aatgactaac aaatgggcaa taataccctc aataccttgt 1441 catacctatt tgaatggaga aataactcag ttaagctcag tactggcata agcatgggga 1501 aaatatttca attaatcagt tcgagtagat atgttttcca aattgatagc gatattagac 1561 atttcatatt gaaatttaca ggtacaaata taatctcagt taatgcgtag aatgcgtttg 1621 caattgaaca aatttaacgt tttatagcaa gaacttagga acaaaagttg tactcgctta 1681 ttctataata atgttaacta aagccaaagc aagtagatcg gttgtataac tcatttctgc 1741 tatagataag tcttgacttg tatcagtact gagctataaa ttggtccata tatacgtagc 1801 caggcctggc cacatataga ggttaataaa cgttatgtac tgcaaaagga tagttgaaac 1861 catagctaaa cgatagtcga tgtaccaacc acactccact ccaatccaat ccaatccaat 1921 ccactcaaat caattcaaaa caacacactc gtaagggaca cacactcacg cataatacgg 1981 gacccacttc agtagaaagt cacacgatat cagcgatcac ggatcacgaa ttacggatca 2041 cggaatacgt atcacggatc acacaggcgg ctcacctcac caagctcagc agcaaactca 2101 ccccacctag gacactgctt ccaggcagct agcgaacgct acaccaacta caataattag 2161 ccaaccctag agtaatcagt ttaccagtaa acagtaacca gtaactagta atcaattacc 2221 aattaccagt aacccatcca aggagtatac cccccttgca aacggggaag cggataaatg 2281 tcactagaat tcagcatcat cagattgaat cacacacaat cctagtcgcc tcacgcgaag 2341 agaactatgt catgatcaga tatcggtgta tgcattctat attatgtact tcgaaatatg 2401 taatttatta agttttcgct atacttttca ttcaaattgg caaaaaccaa ttcaaaggtt 2461 ttcaatattt tcgaaaagca ttttaggctt tctatgtaac gtatgttttt caaacaaaat 2521 attagttttt gaaactttat tatcggataa acaaatgtaa gccaaattac aacgtttatg 2581 atactccaaa gattcgcact ataaagccca cgaaagtggc ctaaaaatag ctgacgcatt 2641 acccataggc gcttcgcttc tcaagataaa acctggcgtg ctcaactcaa gaacaaatat 2701 gtggttatat acatatatac atatatgggg catataaccg atgtgtgacg tgacattggc 2761 tcgttctatt cacatactta aacactaaat gcaaacctat caaaaaccaa ctacactaag 2821 cgaaaaagcg gcagagatag ttaaggaaag tggtcaagag aggacgagag agagagagag 2881 agaaagtgaa agtgaaaggg agagatagta aaactgcatc tgcatccaaa gacacgagaa 2941 ttgaattcat caataataac atacgtataa acgatatgca tacgatatag aattgaatct 3001 gtaactgatg ggcatatacc gcatatatat cttatatacc gcatatatct tatatatgta 3061 taccaagaaa aacaaagtca ttttggcaat aataaagcat agcaaacaac aat