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LOCUS NM_001169244 3341 bp mRNA linear INV 26-DEC-2023 mRNA. ACCESSION NM_001169244 VERSION NM_001169244.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3341) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3341) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3341) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3341) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3341) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3341) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3341) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3341) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3341) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3341) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3341) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3341) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3341) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3341) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3341) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3341) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3341) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3341) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3341) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3341) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3341) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3341) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3341) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3341 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3341 /gene="Rph" /locus_tag="Dmel_CG11556" /gene_synonym="CG11556; Dmel\CG11556; rph; Rph3A" /note="Rabphilin" /map="9E2-9E4" /db_xref="FLYBASE:FBgn0030230" /db_xref="GeneID:32002" CDS 1422..2627 /gene="Rph" /locus_tag="Dmel_CG11556" /gene_synonym="CG11556; Dmel\CG11556; rph; Rph3A" /note="CG11556 gene product from transcript CG11556-RB; CG11556-PB; Rph-PB; dm-rabphilin; rabphilin-3A" /codon_start=1 /product="rabphilin, isoform B" /protein_id="NP_001162715.1" /db_xref="FLYBASE:FBpp0290773" /db_xref="GeneID:32002" /db_xref="FLYBASE:FBgn0030230" /translation="MAKGIASTRLQREDSFRLRAYGSIRSFIDGGERKLSNSFFFNRQ QSQRPSECPEYDSVSMSKLRRESSFLRRGSVSSSWSISDSSGSGSNNSGNSQTQSQYQ QHQQQLQQHCRDPLLGWLEIAISYREAFHSLDCTMVRARDLPAMDAAGLADPYCKLNI ITPEAHTKYTRWQRTKTVHKTRNPEFNETLQFVGVEPEELGNSLIYVALFDDDKYGHD FLGAAKVCLSTVHSTSQYRISVPLGVEDQYSNAAEMAQNWPNGKMLLSLCYNTKRRAL VVNVKQCINLMAMDNNGSSDPFVKIQLKPDAHKNKKHKTSVKWRTLNPIYNEEFYFEA SPHDLNKEMLILTVWDKDLGKSNDFLGSLQLGAQSKGERLQQWLDCIRLPDHFHEKWH CLAPDNPAH" misc_feature 1770..2141 /gene="Rph" /locus_tag="Dmel_CG11556" /gene_synonym="CG11556; Dmel\CG11556; rph; Rph3A" /note="C2 domain first repeat present in Rabphilin and Double C2 domain; Region: C2A_Rabphilin_Doc2; cd04035" /db_xref="CDD:176000" misc_feature order(1860..1862,1878..1880,2052..2054,2058..2060, 2073..2075) /gene="Rph" /locus_tag="Dmel_CG11556" /gene_synonym="CG11556; Dmel\CG11556; rph; Rph3A" /note="Ca2+ binding site [ion binding]; other site" /db_xref="CDD:176000" misc_feature 2205..2603 /gene="Rph" /locus_tag="Dmel_CG11556" /gene_synonym="CG11556; Dmel\CG11556; rph; Rph3A" /note="C2 domain second repeat present in Rabphilin and Double C2 domain; Region: C2B_Rabphilin_Doc2; cd08384" /db_xref="CDD:176030" misc_feature order(2289..2291,2307..2309,2469..2471,2475..2477, 2493..2495) /gene="Rph" /locus_tag="Dmel_CG11556" /gene_synonym="CG11556; Dmel\CG11556; rph; Rph3A" /note="Ca2+ binding site [ion binding]; other site" /db_xref="CDD:176030" ORIGIN 1 agtcgcacac cagctgctca cgcattcgga cgtgttttcg catccgtttc gcaaccgatt 61 cgcaaacgct ccgcagctcg gcgccgacaa caacagttgg gccccattgc gaacaacaga 121 tacaagtggc cagcggactg gagtttcggc gggccggagt ctccatatcc gaatataatg 181 tgacaggacg acaagatgga cttccagaat cgcaacaata cggccaacaa gtttgtctgc 241 cccagcgaca ggcaactggc cctgcgtgcc aaattaaaag ctggctggag cagttccaag 301 accagtgagc cgctgcgtcc cgaggagcag gaggccatca tctcggtgat ccggcgcaac 361 gaggagattg aggtggccga gcggcaacgg gttggccgcc tggtggagcg cgtcgagaag 421 atcaagcagc atgccgtgga gcggggaccc aattgctgtc gcctgtgcgg cgacaccttc 481 ggtatcctgc ggccgcagcg catcctgtgc gaggactgcc gccagtcggt gtgcaccaag 541 tgcagcgtgg acattaacat ccgctaccac accagcgagc ggtcccgcga aatctggctg 601 tgtcgcatct gctccgagac gcgcgagatg tggaagaagt ccggagcgtg gttcttcaag 661 ggtctgccca agtacgatat gccgcgcagc gccagtgcca cgcccattcc caacccggga 721 cccggatcca tggcaggaac atcatgaaac gtttccattt ccatagtcca attcccaata 781 aatcgttata gacgcttctt tatggtaacc ataatcagag cttcagccgg atgggttaat 841 ataaagagcc aataagtgta gttcgttcag agtcattaac caatttaaat tctactccaa 901 atcgctcaaa ttcatcagtc gtcgatagat ataatctttt attcagagca acaccactaa 961 ttaccttcga gttatcaacg actatcgcta ttatcatcgt ccgcccatcg caataatcgg 1021 tcttctatct agtctatcgc ttatcgaaaa gatcgcagtc tgtcaatcgg aatctgatag 1081 ccacagtctg tcaggcggtt tccctaatgt ttgatgatca gttttaggtg catttcgatt 1141 gctatcgata ccgatacagc gcagtcataa tcggcaatca aatcaccgta cgactatcgc 1201 tattatcgca cgaaacagag tatcggaatt gcacatcggc ctattgtaaa ggcgacacgc 1261 gggccgttca aagctgtcat gcgacgccaa cacgaccggc gcgggtgaag aagctaacga 1321 tccgggtgaa cgacagcagc tccagcagca gcgggcactc ggagccggag gatgaggtgg 1381 acaccggagt aggaataggc gtcggcgttg tcggtggtgg catggccaag ggcattgctt 1441 ccactcgttt gcaacgggag gatagcttcc ggctgagggc atacggctcc atacgcagct 1501 ttatcgacgg cggcgagcgg aagttgtcca actccttctt cttcaaccgc cagcaaagtc 1561 aacggccatc ggagtgcccg gaatacgaca gcgtcagcat gtcgaagctg aggcgggaga 1621 gcagcttcct gcggcgcggc tccgtcagct cctcctggtc gattagcgat agttccggct 1681 ccggatcgaa caactccggc aactcacaaa cgcagtcgca gtaccagcag caccagcaac 1741 agctacagca gcactgtcgc gatcccctgc tcggctggct ggagattgcc attagctatc 1801 gtgaggcctt ccacagcctc gactgcacca tggtgcgtgc gcgggatctg cccgccatgg 1861 atgcggccgg attggcggac ccgtactgca agctcaacat cattacgccg gaggcgcaca 1921 ccaagtacac gcgatggcag cgcacaaaga cggtgcacaa gacccgcaat ccggagttca 1981 acgaaacgct gcagttcgtc ggcgtggagc ccgaggagct gggtaactcg ctgatttacg 2041 tggccctttt cgacgacgac aagtacggcc acgactttct cggcgcggcc aaggtctgcc 2101 tttccacggt gcacagcacg tcgcagtacc ggatttcggt gccactcggc gtggaggacc 2161 agtacagcaa cgcggcggag atggcccaga actggcccaa tggcaagatg cttctctcgc 2221 tctgctacaa caccaagcga agggcgttgg tggtgaatgt gaaacagtgc atcaacctga 2281 tggccatgga caacaacggc agctccgatc ccttcgtcaa gatccaactc aagccggatg 2341 cgcacaagaa caagaagcac aagaccagcg tcaaatggcg cacgctcaat cccatctaca 2401 acgaggagtt ctacttcgag gcaagtccgc acgacctcaa caaggagatg ctcatcctga 2461 ccgtgtggga caaggatctc ggcaagagca acgacttcct gggcagcctg caattgggcg 2521 cccaaagcaa aggcgaacgc ctgcagcagt ggctcgactg catccgattg cccgatcact 2581 tccacgagaa atggcattgc ctcgcccccg acaatcccgc ccactgagta gccccatccg 2641 atcccaacgc caaccgatcc ccagtccaat cgattcgatc ttatctctac cgatatggat 2701 gtttttcctg taggacacat ttgaacgaac tgatttctca gcgcagtcaa ggaaatatga 2761 accatatctt ttacgttaag tagttcagga acatattaat gctaatgctt ttttcatttc 2821 tataactttt ttaactttaa acagttaata attgaatact ttgtaatttt aaagatataa 2881 actgcatgct ttgctagatc gaatcaacac taattggtag ctcaaaggac gatttgcatt 2941 agactaagct gagaaatcag gtcgtggaaa tgaggcttta gctccaaata tacacatata 3001 tatatatact tacatataca tacatatata ttatatacat atatttttga taagcctgaa 3061 tgggtgtgag caagcaagaa gaagctaaaa agagcgagaa atattgtgtg tttttgagtg 3121 aatgctttcc aaaaatctcg tacgtaaccc caattttcta tgtctatact ttggctctta 3181 tcggcatttt tgtacactgt atatagcttg tttaagtgtc cttaccaagg gttaaccaac 3241 atcaaaatct tttcgattca ttgctaaatt caatctttaa tcaaacgtat acttatgtac 3301 ttcaatatat cgaaatatat acatctatat tctcaaaaga t