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LOCUS NM_001169243 2605 bp mRNA linear INV 26-DEC-2023 transcript variant C (APC4), mRNA. ACCESSION NM_001169243 VERSION NM_001169243.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2605) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2605) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2605) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2605) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2605) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2605) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2605) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2605) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2605) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2605) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2605) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2605) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2605) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2605) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2605) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2605) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2605) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2605) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2605) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2605) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2605) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2605) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2605) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_001169243.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2605 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2605 /gene="APC4" /locus_tag="Dmel_CG32707" /gene_synonym="CG32707; CG4350; Dmel\CG32707" /note="Anaphase Promoting Complex subunit 4" /map="8C4-8C7" /db_xref="FLYBASE:FBgn0052707" /db_xref="GeneID:31835" CDS 118..2439 /gene="APC4" /locus_tag="Dmel_CG32707" /gene_synonym="CG32707; CG4350; Dmel\CG32707" /note="CG32707 gene product from transcript CG32707-RC; CG32707-PC; APC4-PC; anaphase promoting complex 4" /codon_start=1 /product="anaphase promoting complex subunit 4, isoform C" /protein_id="NP_001162714.2" /db_xref="FLYBASE:FBpp0301606" /db_xref="GeneID:31835" /db_xref="FLYBASE:FBgn0052707" /translation="MAQTSSMKLLGARNMSCIVERMEWNNKMDLIAYGTEKGEVVIQR LNWQKIVTFPTPGEDVRVRSLSWQMDETLLAVGYSNGKVALLDAESGTIISGLIYEDD IKKVYFSKAINSQENLGTYTCNVKDKHRRFLPKLQPMTNIDPCLKTLDQKSFPKGSPC FLVVIMRSGKVHLLLLGALQAGSIDLTQHILHPHEFDVYDVRMNGDCNAIYALLRDGQ ELILLHFQNQVLQDCMAPMLELATHCAHILETKNYINDTQQCLTEAWETVQLEMDNKL TRYANSQPYGVISAHFLELHVFGFATFEVEEFLTLSEKGFKKIANSVDLSLSNLQSLV FKQLNGAAINMFYFLNTIAGFGRMSHFFESLISPDVANEAMRACGGFVLKVHELQRTI DTLAYDMKLFHAWMIFTILRLSHQEIPDDLVLTEEENIAMADFICAMEPELDDRSDDE DELDSQSQTPPPARSKFNLERVGQYLDNAYLTQLYPRDPVQLWEEMVTDNECLSNCKL FVPHDVNLSLVQQRDKMFNAIDAVFHKPTESISGSFKVSSTVICNDLPPMEPGEDHRD RDLVTCTYYVNEASRTDMLACTISGQEAMILEFSRAGDECVRCTRITLEPGLFTTSVS EDFCYLRFVDLQFYNESSLSILAQSINAGPGMRPHSFFIQFSLTAALNYSTQHRMGPL VKLSEATVSQSIHDIADGAAFKGLDGFSDMLAVSGSRKVATVLSDRKRKMTIFEMEIE EEEDDTEMSQASFLDISKESVLAGVPDAEKQEA" misc_feature 181..450 /gene="APC4" /locus_tag="Dmel_CG32707" /gene_synonym="CG32707; CG4350; Dmel\CG32707" /note="Anaphase-promoting complex subunit 4 WD40 domain; Region: ANAPC4_WD40; pfam12894" /db_xref="CDD:403945" misc_feature 781..1365 /gene="APC4" /locus_tag="Dmel_CG32707" /gene_synonym="CG32707; CG4350; Dmel\CG32707" /note="Anaphase-promoting complex, cyclosome, subunit 4; Region: ANAPC4; pfam12896" /db_xref="CDD:463744" ORIGIN 1 agcaggaata ttattcgata gactgcaaca ggagccggca aagtgtaaac taaaattatt 61 atattgaaat atttgatgca cagtagagac gccgcgagcc aattctagcg tggaaagatg 121 gcacaaacga gctccatgaa gttgctgggc gcccgcaaca tgtcctgcat tgtggagcgt 181 atggagtgga acaacaagat ggatctaatt gcctacggaa cggaaaaggg tgaggtggtc 241 atccagcgtc tgaactggca aaagattgtc acctttccca cgcccggcga ggatgtgcgg 301 gtgcgttcgc tcagctggca aatggacgag acactcctgg cggttggcta cagcaacggc 361 aaggtggcgc tcctggacgc cgagagcgga acgataatat caggcctcat ttacgaggac 421 gacatcaaga aggtctactt cagcaaggcc atcaactcgc aggagaacct aggaacttac 481 acatgtaatg tcaaggataa acaccgaagg ttcctgccca aactgcagcc aatgaccaat 541 attgatccgt gcctgaaaac cctggaccaa aagtcctttc caaagggatc accttgcttt 601 ctggtggtga taatgcgcag cggcaaagtg cacctactgc tcctaggagc cctgcaggcg 661 ggcagcatcg atctcacaca gcacattctg catccgcacg agttcgatgt gtacgatgtg 721 aggatgaacg gagactgtaa tgccatttat gctcttttgc gggacggtca ggagctgata 781 ttgctgcact ttcaaaacca ggtgctgcag gattgcatgg cacccatgct ggagctggca 841 acgcattgtg cccacatcct agaaaccaaa aactatatta atgacacgca acaatgtttg 901 acggaggcct gggagaccgt gcagttggaa atggacaata agctaaccag gtacgccaat 961 tcccagccgt acggagtgat atctgcccat tttctggagc tgcacgtctt tggattcgct 1021 accttcgagg tagaggagtt tttgactctt tccgagaagg gtttcaagaa gattgccaac 1081 tcggtggacc ttagtttaag caatctgcag agcttagttt tcaagcaact gaatggagca 1141 gccatcaaca tgttctattt cctcaacaca atcgcgggtt tcggtcgcat gtcgcacttt 1201 tttgagtccc taatctctcc ggatgtggcc aacgaagcga tgcgagcctg tggaggattt 1261 gtgctcaaag tacacgagct gcagcgaaca atcgacacgt tggcgtacga catgaagctc 1321 tttcacgcct ggatgatatt cacaatacta cggctgtcgc atcaggagat tcccgatgac 1381 ctggtgctca ccgaggagga gaacattgcc atggccgact tcatctgcgc catggaaccg 1441 gaattggacg atcgcagcga tgatgaggat gaactggatt cgcaatccca aacgccaccg 1501 cctgcgcgca gcaaattcaa tttggaacga gtgggccagt atctggacaa tgcctacctc 1561 acacagctct atcccaggga tccagtccag ctgtgggagg agatggtaac cgacaacgaa 1621 tgcctaagca actgcaaact ttttgtgccc cacgacgtga acctgtcgct tgtgcagcag 1681 cgcgacaaga tgttcaatgc catcgatgcc gtgttccata agccaacgga gagcataagc 1741 ggaagtttca aggtctcctc gacggtgata tgcaacgacc tgccgcccat ggagcccggc 1801 gaggatcata gggacaggga tctcgtcacc tgcacctatt acgttaacga agcgtccagg 1861 accgacatgt tggcctgcac catcagcggg caggaggcca tgatactcga gtttagtcga 1921 gcgggcgatg aatgcgtgcg ctgcactaga attacactgg agccaggatt atttacaaca 1981 tccgtgtccg aagatttctg ttacctacgc ttcgtcgacc tgcagttcta caatgaatct 2041 tcgctatcga tactggccca gtccataaat gcgggacctg gcatgcgacc gcatagcttc 2101 tttatacaat tctcactgac cgcggcgctg aattacagca cacagcaccg aatgggaccg 2161 ttggtcaagc tgagcgaagc caccgtgtcg caaagcatcc atgacattgc cgatggtgcc 2221 gccttcaagg gactggacgg atttagcgac atgttggccg tctcgggcag caggaaggtg 2281 gccaccgttc tctccgatcg caagcgcaag atgaccattt ttgagatgga aatcgaggag 2341 gaggaggatg acacggaaat gtcccaggcc tcgtttctgg acatcagcaa agagtctgtg 2401 ctggctggcg ttcccgatgc ggagaaacag gaggcgtagt cttgaatcta ttgaatttaa 2461 attatattga ttgttgtgtg ataacttaaa atgtttccaa taattttata ttttacaatt 2521 cgtaaaggca ttggtggtag aaaagaatgg ttaaaattct tgttacgatt tgtccgttaa 2581 aatagggctg aataaataat ctgtt