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LOCUS NM_001169238 2658 bp mRNA linear INV 26-DEC-2023 F (CG12065), mRNA. ACCESSION NM_001169238 VERSION NM_001169238.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2658) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2658) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2658) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2658) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2658) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2658) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2658) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2658) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2658) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2658) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2658) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2658) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2658) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2658) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2658) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2658) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2658) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2658) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2658) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2658) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2658) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2658) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2658) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001169238.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2658 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2658 /gene="CG12065" /locus_tag="Dmel_CG12065" /gene_synonym="Dmel\CG12065" /map="7F5-7F7" /db_xref="FLYBASE:FBgn0030052" /db_xref="GeneID:31798" CDS 372..2297 /gene="CG12065" /locus_tag="Dmel_CG12065" /gene_synonym="Dmel\CG12065" /note="CG12065 gene product from transcript CG12065-RF; CG12065-PF" /codon_start=1 /product="uncharacterized protein, isoform F" /protein_id="NP_001162709.1" /db_xref="FLYBASE:FBpp0289975" /db_xref="GeneID:31798" /db_xref="FLYBASE:FBgn0030052" /translation="MSERRSHIQMAPPPPPPKPNKSQTANGNGIGNGTGIGTGTGNGT LPNGNKNYNKIVAVQDQEPLAQNSSGVQRSQSPPRTEQVVMTPRGKTANSTVILIERK LVDEINDRVHVAGGDHTGIIINKDTVAGQKSASKAAALSLEFRVFLVSANTGKHSQES RTLRFWFRDWLTNEEKQAHIAQDFFKELVSPQDFPRDYVGFIKKIMKLLQHGYSEIQS IEIELRILEETSAPPSRPLSLEESQFESPPLTQEKVLELIEQAYPNPVSPEDLAKDYG WSEQDVLLVIKSLQERGLIKSMEYNAYTRIHHEDKEIKVVKQMPTIASNKQPTIAIIT AQYCEKLAVDAMLENKETFVRYTTVGESNVYTLGNIGAHRIVSTKLPSVGSNREAMTA TGNTTTRLLGTFQKVDYVFIVGVAGGVPHYTDYKKHVRLGDVVISYVDKQRALISNSK EKPYVYLYKSGEDVKTYFPVNDSLQQIAESLQANMQVKRPWEDYLNQAQQALAQKTDA DFNRPDARTDKLFMNIGNNEVIEVAHPIAADEVDGVNRLRLHLGPIGSGRDLVRSDEL RTQFARKYGLLATDVEMSSVLDSIIGNCRESFILVKGIADYKDGTSTRKWQNFAAISA ASVVKSVICGMDAPTNV" misc_feature 1101..>1259 /gene="CG12065" /locus_tag="Dmel_CG12065" /gene_synonym="Dmel\CG12065" /note="Predicted transcriptional regulator, contains CW (cell wall-binding) repeats and an HTH domain [General function prediction only]; Region: COG2512" /db_xref="CDD:442002" misc_feature 1356..2267 /gene="CG12065" /locus_tag="Dmel_CG12065" /gene_synonym="Dmel\CG12065" /note="Nucleoside phosphorylase/nucleosidase, includes 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase MtnN and futalosine hydrolase MqnB [Nucleotide transport and metabolism, Coenzyme transport and metabolism]; Region: MtnN; COG0775" /db_xref="CDD:440538" ORIGIN 1 tcagttgaaa agcgaacttt gaacaaaacg gactttgaaa agggtttcca tccatcaaca 61 tctatccccg tgttttcatt ttgtttttgc cggcattttg gcaagtagtg gaataaacga 121 agcaaaccag caaggaaaac ataaaacaaa ttaagcaaat aatagtgacc gaaaagggag 181 aaccggttgc aaatcaagtg gcaaataaaa cacgtcattt gttcgtttgt ttgatccagc 241 aacagcacca gcagcagcaa gtttgggctc aaggacgtcg ccggagcagc ggtatcgtat 301 cggatcgaag gagcagcagt tccagcacca aggaacagga ggagcaaggc ggagcaacta 361 gcaccagcac catgtcggag cgcaggagtc acatacagat ggcgccgcca ccgccgcccc 421 ccaagccaaa caaatcgcag acagccaatg gaaatggtat tgggaacggc acaggcatag 481 gaacgggcac tggcaacgga accctgccga atggcaataa aaactataac aaaattgtcg 541 cagtccaaga ccaggagccg ctggctcaga actcgagcgg cgttcaaagg agccagtcgc 601 caccacgcac agaacaggtt gtgatgacgc cacgcggtaa aacggccaac agtacggtga 661 tcctcatcga acgcaaactg gtcgatgaga tcaatgatcg cgttcatgtc gccggcggtg 721 atcatacggg catcatcatt aacaaggaca cggtcgccgg acagaagagc gccagcaagg 781 cggcagcgct atcgctggaa ttccgcgtct ttctggtcag cgccaatacg ggcaagcatt 841 cgcaggagtc gcgcaccctg cgcttctggt tccgcgactg gctgaccaac gaggagaagc 901 aggcgcacat agcccaggac ttcttcaagg agctggtcag tccgcaggac tttcccagag 961 actacgtggg cttcatcaag aagataatga agctcctgca gcacggatac tcggagatcc 1021 agtcgatcga gattgagctg cgcatcctgg aggagacatc cgcaccaccc tcgcgaccac 1081 tttcgctcga ggaatcgcag ttcgaatcac cgccgttgac tcaggagaag gtgctggagc 1141 tcatcgagca ggcatatccc aatcccgtgt cccccgagga tctggccaag gattacggct 1201 ggagcgagca ggatgtgctg ctggtgatca agtcactgca ggagcgcggt ctgatcaagt 1261 cgatggagta caatgcgtac actcgcatcc atcacgagga caaggagatt aaggtggtca 1321 agcagatgcc cacgatcgcc tccaacaagc agcccaccat tgccatcatc acggcgcaat 1381 attgcgagaa gctcgccgtg gacgcaatgc tcgagaacaa ggagacattc gtccgataca 1441 ccacagtcgg cgaatcgaat gtgtatactc tgggcaatat cggggcgcac aggatcgtga 1501 gcaccaagct cccgtcggtg ggcagcaatc gggaggcgat gacggcgacg ggcaatacca 1561 caacccgtct gttgggcaca ttccaaaagg tcgactatgt tttcatcgtg ggcgtagccg 1621 gtggcgttcc ccactacacg gactataaga agcacgtgcg actgggcgat gtggtcatct 1681 cgtatgtgga caaacagcgg gcactgatca gcaatagcaa ggagaaaccg tacgtgtact 1741 tgtacaagag cggcgaggac gtgaagacct acttcccggt gaacgattcg ctgcagcaga 1801 tcgccgagag cctgcaggcc aacatgcagg tgaagcggcc gtgggaggac tacctgaacc 1861 aggcccaaca ggcgttggcc cagaagacgg atgccgactt caaccggccg gacgcgcgga 1921 cggacaaact gtttatgaac attggaaata acgaggtgat cgaggtggcc catcccattg 1981 ccgccgacga ggtggacggt gtcaatcggt tgcgactcca tctgggtccc attggatccg 2041 gaagggatct ggtgaggagc gacgagctgc gcacccagtt cgccaggaag tacggcctac 2101 tggccaccga tgtggagatg agcagcgtgc tggacagcat cattggcaat tgcagagaga 2161 gctttatact ggtgaagggc atcgctgact acaaggacgg cacgtccacc aggaagtggc 2221 aaaacttcgc tgccatttcg gcggcgtcgg tggttaagtc ggttatctgc ggcatggacg 2281 cgcccacgaa tgtataggag gcggggcttc gaatacccca tttcctccat tacaccccaa 2341 cccccccgcc caccccttcc ctgcaatcgt agcatttgat ttgcctccaa ttttcgtacc 2401 aatcccgctg cggcgtccct ttattttttt gtggccagac acatggggac cactattcgt 2461 aaaccaaaat gtgcatagat tgcatcatat ataatgtatg ttcgcgtaat attgtattaa 2521 atgatttctt gttatttatt ttgttataac ttttgtacta caatcaatct aatttacaca 2581 caaacacttg acgtatataa aaacacatat atacaacagt aaataaatat cgcaactaag 2641 cttgcaaaaa ctaagaat