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Drosophila melanogaster TATA box binding protein-related factor 2


LOCUS       NM_001169230            9866 bp    mRNA    linear   INV 26-DEC-2023
            (Trf2), transcript variant F, mRNA.
ACCESSION   NM_001169230
VERSION     NM_001169230.2
DBLINK      BioProject: PRJNA164
            BioSample: SAMN02803731
KEYWORDS    RefSeq.
SOURCE      Drosophila melanogaster (fruit fly)
  ORGANISM  Drosophila melanogaster
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
REFERENCE   1  (bases 1 to 9866)
  AUTHORS   Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St
            Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K.,
            Strelets,V., Russo,S.M. and Gelbart,W.M.
  CONSRTM   FlyBase Consortium
  TITLE     Gene Model Annotations for Drosophila melanogaster: Impact of
            High-Throughput Data
  JOURNAL   G3 (Bethesda) 5 (8), 1721-1736 (2015)
   PUBMED   26109357
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9866)
  AUTHORS   Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St
            Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B.,
            Russo,S.M. and Gelbart,W.M.
  CONSRTM   FlyBase Consortium
  TITLE     Gene Model Annotations for Drosophila melanogaster: The
            Rule-Benders
  JOURNAL   G3 (Bethesda) 5 (8), 1737-1749 (2015)
   PUBMED   26109356
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 9866)
  AUTHORS   Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I.,
            Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R.,
            Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G.,
            Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N.,
            Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A.,
            Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E.
  TITLE     The Release 6 reference sequence of the Drosophila melanogaster
            genome
  JOURNAL   Genome Res 25 (3), 445-458 (2015)
   PUBMED   25589440
REFERENCE   4  (bases 1 to 9866)
  AUTHORS   Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M.,
            Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F.,
            Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E.
  TITLE     Sequence finishing and mapping of Drosophila melanogaster
            heterochromatin
  JOURNAL   Science 316 (5831), 1625-1628 (2007)
   PUBMED   17569867
REFERENCE   5  (bases 1 to 9866)
  AUTHORS   Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
  TITLE     The Release 5.1 annotation of Drosophila melanogaster
            heterochromatin
  JOURNAL   Science 316 (5831), 1586-1591 (2007)
   PUBMED   17569856
  REMARK    Erratum:[Science. 2007 Sep 7;317(5843):1325]
REFERENCE   6  (bases 1 to 9866)
  AUTHORS   Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D.,
            Ashburner,M. and Anxolabehere,D.
  TITLE     Combined evidence annotation of transposable elements in genome
            sequences
  JOURNAL   PLoS Comput Biol 1 (2), 166-175 (2005)
   PUBMED   16110336
REFERENCE   7  (bases 1 to 9866)
  AUTHORS   Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A.,
            Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A.,
            Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W.,
            Celniker,S.E., Rubin,G.M. and Karpen,G.H.
  TITLE     Heterochromatic sequences in a Drosophila whole-genome shotgun
            assembly
  JOURNAL   Genome Biol 3 (12), RESEARCH0085 (2002)
   PUBMED   12537574
REFERENCE   8  (bases 1 to 9866)
  AUTHORS   Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J.,
            Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E.,
            Rubin,G.M., Ashburner,M. and Celniker,S.E.
  TITLE     The transposable elements of the Drosophila melanogaster
            euchromatin: a genomics perspective
  JOURNAL   Genome Biol 3 (12), RESEARCH0084 (2002)
   PUBMED   12537573
REFERENCE   9  (bases 1 to 9866)
  AUTHORS   Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S.,
            Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E.,
            Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L.,
            Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D.,
            Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J.,
            Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M.,
            Rubin,G.M. and Lewis,S.E.
  TITLE     Annotation of the Drosophila melanogaster euchromatic genome: a
            systematic review
  JOURNAL   Genome Biol 3 (12), RESEARCH0083 (2002)
   PUBMED   12537572
REFERENCE   10 (bases 1 to 9866)
  AUTHORS   Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W.,
            Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E.,
            Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M.,
            Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S.,
            Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M.,
            Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W.,
            Gibbs,R.A. and Rubin,G.M.
  TITLE     Finishing a whole-genome shotgun: release 3 of the Drosophila
            melanogaster euchromatic genome sequence
  JOURNAL   Genome Biol 3 (12), RESEARCH0079 (2002)
   PUBMED   12537568
REFERENCE   11 (bases 1 to 9866)
  AUTHORS   Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D.,
            Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F.,
            George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N.,
            Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X.,
            Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D.,
            Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L.,
            Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D.,
            Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M.,
            Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S.,
            Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P.,
            Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A.,
            Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B.,
            Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I.,
            Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S.,
            Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C.,
            Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S.,
            Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z.,
            Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J.,
            Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J.,
            Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z.,
            Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C.,
            Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A.,
            Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C.,
            McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C.,
            Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L.,
            Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K.,
            Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S.,
            Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K.,
            Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I.,
            Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C.,
            Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R.,
            Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A.,
            Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT,
            Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F.,
            Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H.,
            Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O.,
            Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C.
  TITLE     The genome sequence of Drosophila melanogaster
  JOURNAL   Science 287 (5461), 2185-2195 (2000)
   PUBMED   10731132
REFERENCE   12 (bases 1 to 9866)
  AUTHORS   Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R.,
            Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R.,
            Smith,E., Yu,C. and Rubin,G.
  CONSRTM   Berkeley Drosophila Genome Project
  TITLE     Drosophila melanogaster release 4 sequence
  JOURNAL   Unpublished
REFERENCE   13 (bases 1 to 9866)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   14 (bases 1 to 9866)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2023) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   15 (bases 1 to 9866)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   16 (bases 1 to 9866)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (20-APR-2020) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   17 (bases 1 to 9866)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (22-APR-2019) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   18 (bases 1 to 9866)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAY-2018) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   19 (bases 1 to 9866)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (07-DEC-2016) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   20 (bases 1 to 9866)
  AUTHORS   Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R.,
            Park,S., Svirskas,R. and Karpen,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
            Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne
            Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA
  REMARK    Direct Submission
REFERENCE   21 (bases 1 to 9866)
  AUTHORS   Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S.,
            Svirskas,R. and Rubin,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
            Lawrence Berkeley National Laboratory, One Cyclotron Road, MS
            64-121, Berkeley, CA 94720, USA
  REMARK    Direct Submission
REFERENCE   22 (bases 1 to 9866)
  AUTHORS   Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
  CONSRTM   Drosophila Heterochromatin Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project,
            Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron
            Road, Mailstop 64-121, Berkeley, CA 94720, USA
REFERENCE   23 (bases 1 to 9866)
  AUTHORS   Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive,
            Rockville, MD 20850, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by FlyBase. This
            record is derived from an annotated genomic sequence (NC_004354).
            
            On Jan 16, 2013 this sequence version replaced NM_001169230.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider :: FlyBase
            Annotation Status   :: Full annotation
            Annotation Version  :: Release 6.54
            URL                 :: http://flybase.org
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9866
                     /organism="Drosophila melanogaster"
                     /mol_type="mRNA"
                     /db_xref="taxon:7227"
                     /chromosome="X"
                     /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2]
                     bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]"
     gene            1..9866
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="TATA box binding protein-related factor 2"
                     /map="7E7-7E9"
                     /db_xref="FLYBASE:FBgn0261793"
                     /db_xref="GeneID:31773"
     CDS             883..6030
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="CG18009 gene product from transcript CG18009-RF;
                     CG18009-PF; Trf2-PF; lethal (1) G0295; lethal (1) G0425;
                     TBP-related factor 2; lethal (1) G0039; TBP related factor
                     2; lethal (1) G0071; TATA box-binding protein related
                     factor 2; TBP-like factor"
                     /codon_start=1
                     /product="TATA box binding protein-related factor 2,
                     isoform F"
                     /protein_id="NP_001162701.1"
                     /db_xref="FLYBASE:FBpp0289804"
                     /db_xref="GeneID:31773"
                     /db_xref="FLYBASE:FBgn0261793"
                     /translation="MGSAVKKGDGSPTRILEEYQVARDLRNEDLFPEHPVEHPDEDSD
                     KENQSPNQSPNPRAIGDCEQGPDIGKDTLNPNEADQFSSEEVEKNEANSSCNESGGDA
                     RNSRDRLSSSHSEDEQLNQEYSTSSSGSTIGNREQGSDVGKDTSSRNEADQFSNEEVE
                     KNEANSSGNESYGDACNSSDRLSSSNSEDEQLHQEYSTSSRGRTREYAQSDLNPGYQD
                     LNIGNQDLNQVNREYQESNNEYQVSNQEYQHLNTEYQELNHGDQDSNDEYQELNHGNQ
                     DSNDEYQESNHGNQDSNDEYQELNHSNQDSNDEYQELNHGDQDSSDEYQDLNHVNQDS
                     NHEYQAWNHEYQDSNHEYQALNREYQYPESDEEEAARKRNIYTRLRSYACQVHLPRLG
                     ESEVDSDDRRHNPINQPFNQPINRPNQKSDSSLESSSPERQDSESESRQASDEESSSG
                     DSDYLIDPVTGWLSRRRETSTEREEKSDQSQQESSEEITDEQKEESDDVEQQSPAEHT
                     SSDRRDHSPDKQQNKRKSLGTGNSSYSKKPLLDGDKGDPRSHLSSLGSRRSLKRKWPF
                     DCTDSKKFKPNLQSEEDKSEEEKREDTESECSDEEDSDSSSFDTDSNSDSDSNLDLDS
                     DSDSHSDFESSSSSEESAQDPAPEGETDQDPAPEGEADQDPAPEGGVDQDPAPEGGVD
                     QDPAPEGEVDQDPAPEGESDQDLAPEGGVDQDPAPEFGTDQDPHPYYNDQDPAPYYDD
                     QDPASYYDDHICDSEEDYKPFIFSKERKFLKFVTNPLGDDKSSLDLSIQLYKVFGAYK
                     LEDVYSSIDEEGQPEQDLQLKQQQKHLKKYQKLQLVVFWHQEKFFSKEQLLLYEYLKL
                     LLQKFFPQEQQEKRLQQEKLLQQEKLLQQEKRLQQEKRLQQEKRLQQEKRLQQEKRLQ
                     QQKLLQQQKLLQQEKLLQQQKLLQQEKLLQQEKLLQQEKQLQQEKHLPQERQLQQDKV
                     FLQLRQLQQKKELEEQRERKRHLFEQQKQFVLEKLRQQKEQHRRQQNRVKRERKLRQK
                     KEKQRLEYERFLKEYREDCKRQLRLQREHYLIKIKQLEKASQRSLKGNRKHKLMQNDM
                     VSIPVANLNGGLKAASSGSGVGVVTSGGVVSSAVLANAPRVYLTPSSTFMTNRQMAGV
                     ASTGRMSGQVVGGSSGTASTAGTVRYFSQFSKMQTAGGPSLQRKLANGDTIVLATGSK
                     NMFLTSSENKANLPTVASNGNGLITAKMDLLEEEVMQSITVIDDDDEEKKEVAEDEEE
                     SSNNAKPIDLHQPIADNEHELDIVINNVVCSFSVGCHLKLREIALQGSNVEYRRENGM
                     VTMKLRHPYTTASIWSSGRITCTGATSESMAKVAARRYARCLGKLGFPTRFLNFRIVN
                     VLGTCSMPWAIKIVNFSERHRENASYEPELHPGVTYKMRDPDPKATLKIFSTGSVTVT
                     AASVNHVESAIQHIYPLVFDFRKQRSAEELQHLRQKQRLQAGGDPHELEKNVLADNKT
                     ASLDNIFVNTTAAHSKSSSNDQTSAPATILSSTVDSMPRLKQMVNYHQMMKQTQEERR
                     HIMFNGEKANPASTSSAAAAPSTSSSSSSSGDNICANARRRATECWATKLQNKRPRYN
                     DPGTTGTINAASSTASAATSSLASQATHLRNPLKTAALANARMLGAKVTTCTRNSIIV
                     QQPQRIQMQQQQQQLQPQQQQTSFSPSEFDVDDLIEEEENNELDMPF"
     misc_feature    <2812..3078
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="hypothetical E4 protein; Provisional; Region:
                     PHA03418"
                     /db_xref="CDD:177646"
     misc_feature    <3553..>4146
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="Family of unknown function (DUF5401); Region:
                     DUF5401; pfam17380"
                     /db_xref="CDD:375164"
     misc_feature    4729..5250
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="TBP-like factors (TLF; also called TLP, TRF, TRP),
                     which are found in most metazoans. TLFs and TBPs have
                     well-conserved core domains; however, they only share
                     about 60% similarity. TLFs, like TBPs, interact with TFIIA
                     and TFIIB, which are part of the...; Region: TLF; cd04517"
                     /db_xref="CDD:239953"
     misc_feature    order(4744..4749,4753..4755,4831..4836,4846..4848,
                     4852..4854,4873..4875,4879..4881,4891..4893,4897..4899,
                     4903..4905,4909..4911,4999..5001,5014..5016,5020..5022,
                     5107..5112,5125..5127,5164..5166,5170..5172,5176..5178,
                     5188..5190)
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="putative DNA interaction surface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239953"
     misc_feature    order(4789..4791,4810..4818,4822..4824,4834..4836,
                     4852..4854,4858..4860)
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="putative TFIIA interaction surface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:239953"
     misc_feature    order(5050..5055,5089..5103,5110..5112,5125..5127)
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="putative TFIIB interaction surface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:239953"
ORIGIN      
        1 gctcaaagtg aaacggccaa acgaagaaga cgtatcgtgt gtgctcagac ttgtgctctc
       61 aaaatttttg gtcaactaca ttattcagct ctgagtttta actaaaaaag atcacaagcc
      121 aaaaaaaaaa aaaacaaaga gaaacctaaa gaaatatcaa ccaaaagtgt gcaaaatcca
      181 aaagattcta caatccgaat cgaaaacaaa aacataagaa ccacaaaagc agcagcagaa
      241 agagacacag agagcagcga aaacttaact gcgaattcag cggctgaagc aaagcagcgg
      301 agcccaagtg caagcgagac ggcagcagag ctccgctgca aggcaacggg atagaaagag
      361 agataaatag agagacagcg cagcagcgat atagagtgag agcaggcggg agagcgagta
      421 gcggcagcga cagcaacaca gccacaaaag agatcgtgag agggagggag agctagacga
      481 cgacctacta cacaaaaaaa gactgctaaa cggaacaact aaaaactaca agcaaattta
      541 accaggagaa aagaacggaa gactagacat aatcataaac atagtagata gaattagaga
      601 accagcaaac ccaacaacta gaacactaag aaaacattaa ttctaataca aaatcacaca
      661 taaaaaagta ttttttggcc ttaagtgcaa acatactcac atacaaacac atacatacac
      721 atccacatga acgaaacaat ggaaagaatg taatacaaca ccaaggaaga atcaccttta
      781 gccttatata caattaaata taattaagaa gctagcaaga aaacgcagag caagagtcct
      841 atcaagaaac ccaaaaagat aacaagaaat atttttttaa cgatgggcag tgccgtcaaa
      901 aagggggatg gttccccgac tcgaatactt gaagaatacc aagtagctag agacttaagg
      961 aacgaggatt tgtttccgga acatccggtt gaacatccgg acgaagattc ggataaggag
     1021 aaccaatcgc cgaatcaatc ccccaatcca agagccatcg gtgattgtga gcaaggacct
     1081 gacattggta aagatactct aaatcccaac gaagctgacc agttttcgag cgaagaagtt
     1141 gagaagaacg aagccaacag cagctgtaac gagtcgggcg gggatgctcg caattctaga
     1201 gatcgtttaa gttcctctca tagcgaggac gaacagctta accaagaata ttcaacttca
     1261 tcaagcggaa gcaccatcgg aaatcgtgag caaggctctg acgttggtaa agatacttca
     1321 agtcgcaacg aagctgacca gttttcgaac gaagaagttg agaagaacga agccaacagc
     1381 agcggtaacg agtcgtacgg ggatgcctgc aattctagtg atcgcttaag ttcttctaat
     1441 agcgaggacg aacagctgca ccaagaatat tcaacttcat caagaggaag aacaagggaa
     1501 tatgcacaat ctgacttgaa tcccgggtac caggacttga atatcggtaa ccaggacttg
     1561 aatcaagtta atcgcgagta ccaggagtct aataacgagt accaggtttc aaaccaagag
     1621 taccagcact tgaataccga gtaccaggag ttgaatcacg gcgatcagga ctcaaatgac
     1681 gagtaccagg agttgaatca cggcaaccag gactcaaatg acgagtacca ggaatcaaat
     1741 cacggcaacc aggactcaaa tgacgagtac caggagttga atcacagcaa ccaggactca
     1801 aatgacgagt accaggagtt gaatcacggc gatcaggact caagtgacga gtaccaggat
     1861 ttgaatcacg tcaaccaaga ctcaaatcac gagtaccagg cttggaatca cgaataccag
     1921 gactcaaatc acgagtatca ggccttgaat cgagagtacc aatatcctga atctgatgag
     1981 gaagaggccg ctagaaaaag aaacatatat acccgtttac gatcctacgc ttgtcaggta
     2041 catctccctc gtttaggaga atcagaagtt gatagcgacg atcgtcgcca taacccaatc
     2101 aatcagccat tcaatcagcc aatcaatagg ccaaatcaaa aatcggattc atctttagag
     2161 tcatcttcgc cggagagaca agactctgaa agcgagtcgc gacaagcttc agatgaggaa
     2221 tcgtcttctg gggactcgga ctacttaatc gatccagtta ctgggtggct atcgcgccgg
     2281 cgagaaactt ctaccgaacg cgaggaaaaa agcgaccaaa gccaacagga gtcgtcagag
     2341 gaaattacag acgaacagaa ggaagaaagc gacgacgtcg aacaacagtc gccggctgaa
     2401 catacttctt ctgatagacg cgatcattcg ccagacaagc aacagaataa gcgaaaatcg
     2461 ttaggcactg ggaattcttc gtattcgaag aaaccattat tggacggtga caaaggagac
     2521 ccacgttcac atttatcgtc tctgggaagt cgcagatcct taaagcgtaa atggcctttt
     2581 gattgtacag actctaagaa atttaaacca aacttgcaga gtgaggaaga caaatctgag
     2641 gaggaaaaac gtgaagatac ggaaagcgaa tgctctgacg aagaagactc agatagttca
     2701 agtttcgata cagattcaaa ttcagattca gattcaaatt tagatttaga ttccgattcc
     2761 gattcccatt ccgatttcga atcatcttca agttctgagg aatctgccca ggatccagct
     2821 cctgaaggcg aaaccgatca agatccagct cctgaaggcg aagccgatca agatccagct
     2881 cctgaaggcg gagtcgatca agatccagct cctgaaggcg gagtcgatca agatccagct
     2941 cctgaaggcg aagtcgatca agatccagct cctgaaggcg aatccgatca agatctagct
     3001 cctgaaggcg gagtcgatca agatccagct cctgaattcg gaaccgatca agatccacat
     3061 ccttattaca acgatcagga tccagctcct tattacgacg atcaggatcc agcttcttat
     3121 tacgacgatc acatttgtga ttctgaggag gattataaac catttatctt ctcaaaggaa
     3181 aggaagttct tgaaattcgt aacaaatcct ttaggggatg ataaatctag tttggacctt
     3241 agcatacagc tctataaggt atttggagct tacaaactgg aagacgtata cagcagtatt
     3301 gatgaggaag gccaaccaga acaggacctg caactgaagc agcaacagaa acatttaaaa
     3361 aaatatcaaa agttgcaact ggtggtattc tggcaccagg agaaattctt ttcaaaggag
     3421 caactgttgc tatatgagta tctgaaacta cttttgcaga aattctttcc acaagagcaa
     3481 caggagaaac ggttgcaaca ggagaaactt ttgcaacagg agaaactctt gcaacaggag
     3541 aaacggttgc aacaggagaa acggttgcaa caggagaaac ggttgcaaca ggagaaacgg
     3601 ttgcaacagg agaaacggtt gcaacagcag aaactcttgc aacagcagaa actcttgcaa
     3661 caggagaaac tcttgcaaca gcagaaactc ttgcaacagg agaaactctt gcaacaggag
     3721 aaactcttgc aacaggagaa acaattgcaa caggagaaac acttgccaca ggagcgacag
     3781 ttgcaacagg ataaagtctt cctacagcta cgacagttgc aacagaagaa agaactggag
     3841 gagcagcgag agcgaaagcg ccacctcttt gagcaacaga aacagtttgt cctagaaaaa
     3901 ttgcgccaac agaaggagca gcatcgtcgt cagcaaaatc gcgtaaaacg cgaacgtaaa
     3961 ttgcgccaga aaaaggagaa acagcgcttg gaatacgaac gattcttgaa ggaatatagg
     4021 gaggactgta aacgtcagtt gcgtttgcag cgcgagcatt atctgatcaa gattaagcag
     4081 ctggagaagg ccagtcagcg ctcgttgaag gggaatcgaa agcacaagct gatgcaaaac
     4141 gatatggtca gcataccggt ggccaatttg aacggcggcc ttaaagcggc cagcagcggt
     4201 tccggagttg gtgtagtgac ctccggcggc gtcgtatcct cggcggtgct ggccaatgcc
     4261 ccacgtgtat acctaacgcc ctcctccaca ttcatgacca atcgccaaat ggcgggagtg
     4321 gcgtccaccg gaagaatgag cggacaagtc gtcggtggtt catctggcac agcctcaaca
     4381 gccggtaccg ttcgctattt ttcgcaattc agcaaaatgc aaacggccgg cggacccagt
     4441 ttgcaaagga aacttgccaa cggggatacc attgttctgg caaccggcag taaaaatatg
     4501 ttccttacta gcagcgaaaa taaggctaat ctgccgaccg tcgccagcaa tggcaatggt
     4561 ctgatcacag ccaaaatgga tctattggag gaggaggtca tgcagtcgat aactgtgatt
     4621 gatgacgatg acgaggagaa aaaggaagtc gctgaagacg aagaagagag cagcaataat
     4681 gccaaaccca ttgaccttca ccagccaatt gctgataatg agcacgagct ggacattgtg
     4741 ataaacaatg tggtctgctc gtttagcgtc ggctgtcacc tgaagctgcg cgaaattgcg
     4801 ctgcagggat caaatgtgga gtaccgtcgc gagaacggaa tggtgacaat gaagctccgc
     4861 catccataca ccactgcctc gatttggtcg tcggggagga ttacctgcac tggtgccact
     4921 tccgagtcaa tggccaaggt cgctgcacgc cgctatgcca gatgccttgg caagctggga
     4981 tttcccactc gtttcctcaa ctttcgcatt gtcaacgtac tgggcacctg cagcatgccg
     5041 tgggccatca agatcgtcaa cttttcggag cgccatcgcg agaacgccag ctacgagccc
     5101 gagctgcatc ctggagtgac ttacaagatg cgcgatcccg atccaaaggc caccctgaag
     5161 atcttctcca ccggcagcgt aacagtcacc gcggctagcg taaaccacgt tgaatcggct
     5221 atccagcaca tatacccgct ggtctttgat ttccgcaagc aacgttcggc ggaggagctg
     5281 cagcatctgc gtcaaaagca gcgtctgcaa gccggcggtg atccccacga actggagaaa
     5341 aatgtcttgg ccgataacaa gactgcttcc cttgataata tctttgttaa tacaacagcg
     5401 gcgcactcta aatcatcgtc gaatgaccaa acatcagcac ccgcgaccat cttgtccagc
     5461 acagttgata gtatgcctcg tctgaaacag atggtcaact atcaccagat gatgaagcaa
     5521 acccaggaag agcgccgcca tataatgttt aatggggaga aggccaatcc ggcctccacc
     5581 tcatcggcgg cagcagctcc ctccacctcc tcctcatcgt cctcatccgg ggataatatc
     5641 tgtgccaatg cccgtcgccg ggccaccgaa tgctgggcaa ccaagctgca gaataagcgt
     5701 ccacgttaca atgatcccgg taccacgggc acaattaacg ccgcatcgtc cacagcatca
     5761 gccgccacat cttcgttagc ctcccaggcg acacatctgc gtaatcctct caagacggcc
     5821 gcgttggcca atgcacgtat gttaggcgcc aaggtgacaa catgcacacg caacagcata
     5881 atcgtgcagc agccgcaacg tatccaaatg cagcagcagc agcaacagct gcaaccgcag
     5941 cagcaacaga ccagcttctc gcccagcgaa ttcgatgttg atgacttgat cgaggaggag
     6001 gagaacaacg aattggatat gcccttctaa gctagcgctg cccgtgccaa aaaaaaattt
     6061 caactaaaat ggttcaaatc gatgatgaaa cactacaaca ctaaacacgc cacactcaca
     6121 aatagccacg agcttctttt cgaatttgtt ggttattcgt tcaagtcatt tttcatcaca
     6181 tttattttcg tgtgcttgcc gcatttaaac taaactcgag aaagcctgga caccgaagcg
     6241 aaaagcaccc acagcgaagc aacaacaaca aacaacaaac aaaacaccgc agcaacaaca
     6301 aaatcaagag ccaaatattt aaaatataag atttacgttt aaactacttt gtaagttaag
     6361 cgagcacacc agaaacaaac aagcagagat agcgaataga tgatttcgat cccgaagtat
     6421 cccagaaacc tcaataacat ctagatggta agcaagggag cttaccacac ggtaaacata
     6481 agtttagact taaagaaaat acgtatgcga cagcgtttta cgtatataac cgaaatctgt
     6541 ggatagcctg gatgagtcac catcaatcat cgcaattgca atcaattgtg gtgaaagtaa
     6601 gagaacacac atgtagaact aatcaccagg acaggaagag gacgatacga gcaaggtgcc
     6661 caggcggatc ggatctcgca gcttcctatc ttattttaaa tttttttttg aagctgaact
     6721 ccaattcagt tctggccaag caaactacaa ttctcaagta aaaatccgtg gagaggaggt
     6781 ggggccagag aaaagcccac taggatagtt atcaattatc tgaagaacaa ctgattaatt
     6841 tcttgtatat tcataggaaa ttttttttgt tttcgctata agtcctacat aataaatgct
     6901 atacataagt gctgcgtgtg ggcgcataac aaacgaaacg aaatgcgttt gaatgcgatt
     6961 ataatattaa tattattatg catatataca acacacacaa atacctatat ctggtcactt
     7021 ctaaccaatt ataaacaaaa ctggaaaagc agaaagtaat tatgtatgtt ttaatttgtg
     7081 ctggcagttt ttgtgttgcg cagaaactcg aatcgaatta agaatgaact cctgtaagat
     7141 gatgacaaaa ataaaaaaaa cattgtaata ggatagaggg aagaggagtc gattaatgcg
     7201 cgacttatta acaataagct gaaacacata tatatatata tatatattgt aatgtttttt
     7261 ttttttgtat ttcgcttaag tgtagattta caaacttgtt cctgtgttgt taaaatcaga
     7321 aagtaaatat tttagttaac ttaacgaagc atacgcatac acaaacacac tcacacacac
     7381 acacacacat acgtatacat atacataata ttaaggcatc caaacaaaca accaaacaaa
     7441 caaacaaaca aacgaacgaa cgaatcataa gcaataatag aatgttttcg ttgtaaaaga
     7501 ggtaaaaata aaaacaaaaa ctaatgaaag aaatactcac gttaaacata aaataacaaa
     7561 ctctagatgt tttggcgtgc cttcacccat aaataggaaa acgaaatgag atacgatagc
     7621 caattgtaca atcattgaag aaatagtact tccagaccac aacagaaccc aaaatcattg
     7681 tacatacgca aacaaaattg atgttttcca attaaacgtg aattgcctca ttcgtacatc
     7741 aagttcaatt ttcatttgtg cttaaaaaca tgaaaccaac tttcatatcg ttcaacttgt
     7801 gcataatcaa aatagctaaa acgaaagtaa aagggaaatt acatataatt agtgagaaat
     7861 atcaaacttt tctttccctc gattatttat acacattttt ggtatacaat tttttttttg
     7921 tttatttttt tttttttaat gttttaattt gcataaacaa aatcgagaaa tgaaaatgcc
     7981 tttagggaac aaataactag cgcggaaagg aaagagatag gtttaggtat aaaaaaaaaa
     8041 aaaatgaaag atattgaaca gatcggagcc gaaatgtatt ttttgtgtat gcgaatatgt
     8101 gaataggtcg acgatggccg aagaacgtgt tacaattgca aaattaactt agccactaag
     8161 cattagtctt aagttagctg acaaactgaa tactaaattg taagccacaa tgcatatagc
     8221 aatgtaaaaa agaaaatgaa acaaaaaaaa aacaaacaac aaatcaaatc taatggaacc
     8281 taacgagaac atttaagtgt aatttaagtg taaataaaat agttgttaac aaatcacaaa
     8341 acaaacgaaa gcaagaaacc aacaatagtg taatgtcttc acgtctaact gccttcgaaa
     8401 gattcaagaa ttattgaaat ttaagcaagc ccacattttg aatgcgaagt tagtattctc
     8461 ttaaaacacg actgcaaatt gcttcacttc aaccttgtac tttcaacaca tttttttttt
     8521 tttgttagag caacaacaac aacagcaacc aacaattaac aattaacaat taacagacgg
     8581 acggagaact ggacaaacgg acaagccgac aaacggacag acacaacgga caaatagatc
     8641 gaaaagccta aataagtgta tttggtttca agaactttga aaaagcaaaa cttaatatta
     8701 atatagtata cagatatatt tttgattatt atgtatttaa tgagaaacaa tgaaacgatt
     8761 aatgataatg atgcaagtat cgatgataac taagtgaaaa caaattgaga aatcaaatag
     8821 cataattctg tttttgtttt gccgtaaaga ctgcattata ccaacaatta attatataca
     8881 aacataataa ataattaact gataaatggg gcgagtaagc tttgcaacta agctgagaac
     8941 aaaacggatg gataaacatt taaagcaagc atacaaaaaa agaaaaacaa acaaaaaaaa
     9001 aaagaagaag caaaccatgg aaaataaaac caagaaacat ttatttatta gatcctaagt
     9061 gaagactacg atttgctagc ggagatcaag tcaggccaga gcggaccttc aaggtaccgc
     9121 atccaagtac gaaaagcaag atgaaattac cttaccaaaa tgtgctagcc ctcgaaaatc
     9181 caccattatc tccatggtgg taatcaaatg attattcgcg agggcgagtc tacaagaaaa
     9241 aagtccataa tagggcgagt aatcggagta attagtaaca ctatctatcg tatgataaat
     9301 caattaccaa ctaaactggg ctaacaaaac acgtatatcc actaagattt atagttttcc
     9361 cctaatcccc tgaaactaat tctaagtaca taagttgcaa gcaaaacgct aagaaaaaaa
     9421 aaaaaagaac ctaaaagtta gttatataca cacaaaagag gatatatgaa tgagtgaatg
     9481 gcggtaagaa ggaaggatgt gcgtttactt tggttttgag attgtttgcc gcagcttcac
     9541 atctcgagcg aaactgtgcg gtttttttga aaacgtcagt tttgaaaaaa aaaaaccaga
     9601 actggcgatt tcaagcaccg agcgtcgttt gtctttcaat atttatcaaa aaaaaaacac
     9661 acacacacac aaatacacac agaaagaact catttgatgt atttagttta acgtttagcc
     9721 actagtttcg aggaacgtta aaaaatgcct ttcctgaact gcagtcaaca ctcaaataag
     9781 cgacaaacaa acaaaatgag aaaagaaaaa aaggaaacca accaaccaaa tgaaagcaaa
     9841 ttgtttgaat aaaaatcaaa ttacat