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LOCUS NM_001169171 2167 bp mRNA linear INV 26-DEC-2023 variant B (deltaCOP), mRNA. ACCESSION NM_001169171 VERSION NM_001169171.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2167) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2167) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2167) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2167) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2167) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2167) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2167) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2167) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2167) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2167) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2167) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2167) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2167) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2167) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2167) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2167) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2167) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2167) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2167) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2167) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2167) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2167) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2167) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001169171.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2167 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2167 /gene="deltaCOP" /locus_tag="Dmel_CG14813" /gene_synonym="63B12S; anon-WO03040301.246; Arch; ARCN1; CG14813; delta COP; Delta COP; delta-cop; delta-Cop; delta-COP; deltaCop; DeltaCop; DM63B12S; Dmel\CG14813; EG:63B12.10; ESTS:63B12S; l(1)G0051; l(1)G0301; l(1)G0450" /note="Coat Protein (coatomer) delta" /map="2B12-2B13" /db_xref="FLYBASE:FBgn0028969" /db_xref="GeneID:45250" CDS 194..1789 /gene="deltaCOP" /locus_tag="Dmel_CG14813" /gene_synonym="63B12S; anon-WO03040301.246; Arch; ARCN1; CG14813; delta COP; Delta COP; delta-cop; delta-Cop; delta-COP; deltaCop; DeltaCop; DM63B12S; Dmel\CG14813; EG:63B12.10; ESTS:63B12S; l(1)G0051; l(1)G0301; l(1)G0450" /note="CG14813 gene product from transcript CG14813-RB; CG14813-PB; deltaCOP-PB; delta-coatomer protein; archain; COPI delta subunit; coatomer complex COPI delta-COP subunit" /codon_start=1 /product="coat protein (coatomer) delta, isoform B" /protein_id="NP_001162642.1" /db_xref="FLYBASE:FBpp0291138" /db_xref="GeneID:45250" /db_xref="FLYBASE:FBgn0028969" /translation="MVLIAAAVCTKNGKVILSRQFVEMTKARIEGLLAAFPKLMTAGK QHTYVETDSVRYVYQPMEKLYMLLITTKASNILEDLETLRLFSKVIPEYSHSLDEKEI VENAFNLIFAFDEIVALGYRESVNLAQIKTFVEMDSHEEKVYQAVRQTQERDARQKMR EKAKELQRQRMEASKRGGPSLGGIGSRSGGFSADGIGSSGVSSSSGASSANTGITSID VDTKSKAAAKPASRNALKLGGKSKDVDSFVDQLKNEGEKIANLAPAAPAGGSSAAASA SAAAKAAIASDIHKESVHLKIEDKLVVRLGRDGGVQQFENSGLLTLRITDEAYGRILL KLSPNHTQGLQLQTHPNVDKELFKSRTTIGLKNLGKPFPLNTDVGVLKWRFVSQDESA VPLTINCWPSDNGEGGCDVNIEYELEAQQLELQDVAIVIPLPMNVQPSVAEYDGTYNY DSRKHVLQWHIPIIDAANKSGSMEFSCSASIPGDFFPLQVSFVSKTPYAGVVAQDVVQ VDSEAAVKYSSESILFVEKYEIV" misc_feature 203..592 /gene="deltaCOP" /locus_tag="Dmel_CG14813" /gene_synonym="63B12S; anon-WO03040301.246; Arch; ARCN1; CG14813; delta COP; Delta COP; delta-cop; delta-Cop; delta-COP; deltaCop; DeltaCop; DM63B12S; Dmel\CG14813; EG:63B12.10; ESTS:63B12S; l(1)G0051; l(1)G0301; l(1)G0450" /note="delta subunit of the F-COPI complex, N-terminal domain; Region: Delta_COP_N; cd14830" /db_xref="CDD:341434" misc_feature 1064..1777 /gene="deltaCOP" /locus_tag="Dmel_CG14813" /gene_synonym="63B12S; anon-WO03040301.246; Arch; ARCN1; CG14813; delta COP; Delta COP; delta-cop; delta-Cop; delta-COP; deltaCop; DeltaCop; DM63B12S; Dmel\CG14813; EG:63B12.10; ESTS:63B12S; l(1)G0051; l(1)G0301; l(1)G0450" /note="Mu homology domain (MHD) of adaptor protein (AP) coat protein I (COPI) delta subunit; Region: AP_delta-COPI_MHD; cd09254" /db_xref="CDD:271162" ORIGIN 1 acactacccg aactcacaca aagccacggt aaacatttgt cgcagaaccg aacacgtcag 61 ctacggggat tgattgttaa acaacgtttc tatcgccccg caaatccgat ccgtagcagc 121 agtccatcct gcgccgtccg catccgatcc gcgaagtatt ttccagggca aaaacgtcaa 181 acgcagcagc aaaatggtat taattgctgc ggctgtctgc acgaagaatg gcaaagtgat 241 tctgtcacgt cagttcgtcg agatgacgaa ggcacgcatc gagggactgc tggctgcctt 301 tcccaagctg atgactgctg gcaagcagca cacttacgtg gagacggact ccgtgcgcta 361 cgtctaccag ccgatggaga aactatatat gctgctcatc accactaagg ccagcaacat 421 tctggaggat ctggagaccc tgcgcctctt ctcgaaagtg attcccgagt acagccactc 481 gctcgacgag aaggagattg tggagaatgc cttcaatctg atcttcgcat ttgacgagat 541 cgtggcactc ggctacaggg agagcgtcaa cttggcccag atcaagacct tcgtggagat 601 ggactcacat gaggagaagg tctaccaggc agtgcgtcag acgcaggagc gtgatgcgcg 661 ccagaagatg cgcgagaagg ccaaggaact gcagcggcag cgcatggagg ccagcaaacg 721 gggtggtccc tccctgggtg gcattggcag ccgcagcggc ggctttagcg ccgacggaat 781 tggcagtagc ggcgtgagca gcagttccgg tgcctccagc gccaacaccg gcatcacctc 841 catcgatgtg gacaccaaat ccaaggcggc tgctaaacca gcttcccgca atgccctcaa 901 gctaggtggc aagtccaagg acgtcgatag tttcgtggat cagctgaaga acgagggcga 961 gaagattgcc aatctggcac cggcggcgcc cgctggaggt tccagtgctg cagctagcgc 1021 cagtgcagcg gccaaggcag ctatcgcgtc ggacattcac aaagagagcg tacatctgaa 1081 gattgaggac aagctagtag tgcgtctggg acgcgatggt ggcgtgcagc agttcgagaa 1141 ctcgggcctc ctgacgttgc gcattacgga cgaggcctac ggacgcattt tgctgaagct 1201 gtctcccaac cacacacagg gcctgcagtt gcagacccac cccaacgtgg acaaggagct 1261 gttcaagtcg cgcactacca tcggactaaa gaacttgggc aagccgtttc cccttaacac 1321 cgatgtgggt gtgctcaagt ggcgcttcgt ctcgcaggac gagtcggcag tcccgctgac 1381 cattaactgc tggccatcgg ataatggaga gggtggatgc gatgttaaca ttgagtatga 1441 actggaggcg cagcagctag agctgcagga cgtggccatt gtcattccct tgccaatgaa 1501 tgtgcagcct tcggtggcgg agtacgacgg cacctacaac tacgattcac gcaagcatgt 1561 gctccagtgg cacattccaa taatcgatgc cgccaacaag tccggttcta tggagttcag 1621 ctgcagtgcc tccattcccg gtgacttctt ccccttgcag gtgtccttcg tctcgaaaac 1681 gccgtatgcg ggcgtcgtgg cccaggatgt ggtgcaggtg gacagcgagg cggcggtcaa 1741 gtattcaagc gagtccattc tgttcgtgga aaagtacgag atcgtgtagg ccgcgccgct 1801 ggccacgccc acctaagtag tacataaata tacataattt cccggggtca tccgatgcga 1861 tgcaattaat tcaactgctg cagcatgttg agaattattt ttccatgtgc gaactttaca 1921 tatttatggc gcagacagct tctcagagcg agtaattgat tccaaaaaaa aaaaaaaaaa 1981 caccatcaaa gccaattaat taaactaatt ttgtgcactc cgctgcgctg catataacgg 2041 tatcaaataa attaattgca attagttgta actggcgatt gcagtgtttt gttttgtgtg 2101 cttcgtcgca ccccttcgat ttgagtaatt tgtatgtaga ttgctatgaa taaaccatat 2161 acaatat