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LOCUS NM_001169169 2966 bp mRNA linear INV 26-DEC-2023 (Scgdelta), mRNA. ACCESSION NM_001169169 VERSION NM_001169169.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2966) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2966) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2966) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2966) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2966) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2966) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2966) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2966) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2966) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2966) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2966) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2966) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2966) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2966) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2966) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2966) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2966) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2966) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2966) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2966) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2966) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2966) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2966) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001169169.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2966 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2966 /gene="Scgdelta" /locus_tag="Dmel_CG14808" /gene_synonym="BEST:GH21860; CG14808; CT34621; Dmel\CG14808; DmSCG-gammadelta; EG:4F1.1; GH21860; Sgcd" /note="Sarcoglycan delta" /map="2B8-2B8" /db_xref="FLYBASE:FBgn0025391" /db_xref="GeneID:31129" CDS 416..1630 /gene="Scgdelta" /locus_tag="Dmel_CG14808" /gene_synonym="BEST:GH21860; CG14808; CT34621; Dmel\CG14808; DmSCG-gammadelta; EG:4F1.1; GH21860; Sgcd" /note="CG14808 gene product from transcript CG14808-RC; CG14808-PC; Scgdelta-PC; delta-sarcoglycan; sarcoglycan-like" /codon_start=1 /product="sarcoglycan delta, isoform C" /protein_id="NP_001162640.1" /db_xref="FLYBASE:FBpp0291384" /db_xref="GeneID:31129" /db_xref="FLYBASE:FBgn0025391" /translation="MLAAGSSEITDFGPHSRQLTAGNTPKRPNKASSHRPGSGSGPGP MTTGGTSSASGNGNSGGALNAIPTTKVGSGGGGGGAMSATTVTATTGKATVSHGHSHG HALGRSETRSGRSAAAGRSNVDGFVGGIETYLGLIGWRKKCLYTLLLLLMLLIITNLV LTLWILKVMEFSTEGMGQLKIVPGGIQLSGQAIIMDMLRASTIRSRHGQPISIESSRN FSINTRDPNGMIENHLFLGHDKFECLSAGFRINDTNGRSLFSVNRDEVTIGAHALRID GEGGAVFRESVQTPHVRAEPGRELRLESPTRQLEMTAAKDINLQSRAGGIEVVALEDV KFRALDGSLRLESSKILMPNLRTAQPPILGTAQSRDHMHRVFQLCACSNGKLFLAAPH SICAGDDSTVCR" misc_feature 818..1594 /gene="Scgdelta" /locus_tag="Dmel_CG14808" /gene_synonym="BEST:GH21860; CG14808; CT34621; Dmel\CG14808; DmSCG-gammadelta; EG:4F1.1; GH21860; Sgcd" /note="Sarcoglycan complex subunit protein; Region: Sarcoglycan_1; pfam04790" /db_xref="CDD:461428" ORIGIN 1 tcagttgttg tgccgccgtg aaggaggacg gtagccgtgc gcgcatacgg agcacattgg 61 tgccgctggc gttggattcg agagacgaga gagagagtgt tccaagattt cccaattcaa 121 tagtttcgaa aaatcgtttt cgagtgtttt ttttttgtct gtgctttctg gttttcgctg 181 cctgctgagc catctgacta gcgcgcctcc cgttcatggc tggcgtttgg aattgtgaag 241 gtcagcgcgt cgtcgcgatc ggactcccat ttcagtgtgt gtcgtaatcc ggccaagaga 301 tcgcgtttgt aaaagatacg aaatctgttt gctcaagaca tagtgataca ggatacgcaa 361 ccggagagtc atgcacttcc catgcatcca ctagctgcag tgcagcagcg ccggaatgtt 421 ggccgctggc agcagtgaga tcactgactt tgggccacac tcgcgccaac taacggctgg 481 caacacgccc aagcgaccca acaaggccag cagccaccgt cctggttctg gttctggtcc 541 tggcccaatg acaactggtg gcaccagctc agcgagcggt aacggaaaca gcggtggggc 601 tctgaacgcc attcccacga cgaaggtcgg gagcggagga ggcggcggag gcgccatgtc 661 cgccacaacg gtgactgcga cgacggggaa agctactgta agccatggcc atagtcatgg 721 ccacgctctg gggcgcagcg agacgaggag cggtcggagc gcagcagctg gacgctccaa 781 tgtggacgga ttcgttggcg gaatcgagac gtacttgggc ctcatcgggt ggcgaaaaaa 841 gtgcctgtat accctgctgc tactgctgat gctgctcatc atcacgaacc tggtgctcac 901 cctctggata ctcaaggtga tggagttctc aacggagggc atggggcagc ttaaaatcgt 961 acccggtggc atacagctgt ccggacaagc gataattatg gacatgctgc gcgcctccac 1021 aatccgttcg cggcacggtc aacccatttc catagagtca tcacgtaact tttcaatcaa 1081 tacacgtgat ccgaatggca tgattgagaa tcatttattc ctgggacacg ataagttcga 1141 gtgcctgtcg gcgggatttc gcataaacga caccaacgga cgcagcctgt tctccgtgaa 1201 ccgagatgaa gtcaccatcg gagcacatgc cctgcggatc gacggcgaag gtggcgccgt 1261 cttccgggaa tccgtgcaga cgccccatgt gcgggccgag cccggccggg agctgagact 1321 cgaatcgccc acacgccaat tggagatgac ggcggccaag gacatcaatt tgcaatcgcg 1381 ggcaggaggc atagaagtcg tggccctgga agacgtcaag ttccgagccc tcgatgggag 1441 cctgcgcctg gagtcctcca agatacttat gcccaacctg cggacggccc agccgcccat 1501 tctgggcact gcccaaagca gggatcacat gcaccgcgtc ttccaactct gcgcctgttc 1561 caatggcaag cttttcctcg ctgcacccca ctccatatgt gccggcgatg attccacggt 1621 ctgcagatga ttgcacgatt cggcgcgctg gcagtcaaca tctacatcgt ccacatccga 1681 tagatcccga tcccgaatcc gattccgatc cgatacggat acgaatacgg acactcatta 1741 aggagctctg ggtctccgta gttctgacag accggtatgc aagtatgcga ttcatggcga 1801 aacgcggagc agaccacagc catagccaca cccatacgca cacgttcatg ttgagttatt 1861 aatatgctga ctggaacata ggacggtata ccgtataccg tatatgatat accatatacc 1921 caattagtgc aaatcactta cacacacaca cgtatagtat atgattagcc aggcgtacgc 1981 gtacatcctg cgttcataat cgtacattaa ctttcatacc cacacactgt cgagggaatt 2041 gtacccaaac tcgaaggaca aaatcaagag cttcttagac acttggatgt tgtgtactag 2101 tataacgaag ggcatttcgg agacataggc atagtaccca tagacctata tatgtaatat 2161 caccgagtca actaactact aatggattaa ataaatagac agatatgatg tcatagtcaa 2221 acgtaggatg tcgtcagagt tgagtcgaat ctcacatcag tattggcgtt aattctatac 2281 ccctcagaaa tcagatcaga ttgaacgaaa ctcggttata gttcagtttt ggtagaaatc 2341 gcaacacaca cagctcgcct tatacaaaga aagtatttct attaggtttc gattataaaa 2401 atatactcgt acgtttcttt ttacaactcg gttttataaa tcagtatcat gaacttggtc 2461 gattattctt tataattgtt aaatctgtcc cgattccata aagcagtcca gagatattgt 2521 acataagact gtccaactca tagaactcca atactgcatc atagcatcaa tctcagtgca 2581 atatgaatac gaaaacaaat acaaatactg aataggacgt tcataaccat attcatgtag 2641 ataatatcgc ggacacagca atgaaattta ggaaatgttt atacgatatc tacatactac 2701 gatcagaata ttcaaaatcc gaagcagaac gctggtatca aacacaatac gaagacaatg 2761 aatatcatcc aataagtcgc aagagctatt tatacctaca ctagatacag atattaacat 2821 aaattcgagt atgagtatca atatgaatac agaaataaat atgggtaaat gagtttgaat 2881 atggctatgg atataaatac gaatataaat ataaaaatat gattataaat atgattataa 2941 ttatgaatat gaatacgaat atgaat