Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NM_001169168 2972 bp mRNA linear INV 26-DEC-2023 (Scgdelta), mRNA. ACCESSION NM_001169168 VERSION NM_001169168.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2972) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2972) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2972) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2972) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2972) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2972) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2972) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2972) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2972) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2972) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2972) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2972) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2972) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2972) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2972) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2972) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2972) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2972) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2972) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2972) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2972) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2972) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2972) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001169168.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2972 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2972 /gene="Scgdelta" /locus_tag="Dmel_CG14808" /gene_synonym="BEST:GH21860; CG14808; CT34621; Dmel\CG14808; DmSCG-gammadelta; EG:4F1.1; GH21860; Sgcd" /note="Sarcoglycan delta" /map="2B8-2B8" /db_xref="FLYBASE:FBgn0025391" /db_xref="GeneID:31129" CDS 422..1636 /gene="Scgdelta" /locus_tag="Dmel_CG14808" /gene_synonym="BEST:GH21860; CG14808; CT34621; Dmel\CG14808; DmSCG-gammadelta; EG:4F1.1; GH21860; Sgcd" /note="CG14808 gene product from transcript CG14808-RE; CG14808-PE; Scgdelta-PE; delta-sarcoglycan; sarcoglycan-like" /codon_start=1 /product="sarcoglycan delta, isoform E" /protein_id="NP_001162639.2" /db_xref="FLYBASE:FBpp0311618" /db_xref="GeneID:31129" /db_xref="FLYBASE:FBgn0025391" /translation="MLAAGSSEITDFGPHSRQLTAGNTPKRPNKASSHRPGSGSGPGP MTTGGTSSASGNGNSGGALNAIPTTKVGSGGGGGGAMSATTVTATTGKATVSHGHSHG HALGRSETRSGRSAAAGRSNVDGFVGGIETYLGLIGWRKKCLYTLLLLLMLLIITNLV LTLWILKVMEFSTEGMGQLKIVPGGIQLSGQAIIMDMLRASTIRSRHGQPISIESSRN FSINTRDPNGMIENHLFLGHDKFECLSAGFRINDTNGRSLFSVNRDEVTIGAHALRID GEGGAVFRESVQTPHVRAEPGRELRLESPTRQLEMTAAKDINLQSRAGGIEVVALEDV KFRALDGSLRLESSKILMPNLRTAQPPILGTAQSRDHMHRVFQLCACSNGKLFLAAPH SICAGDDSTVCR" misc_feature 824..1600 /gene="Scgdelta" /locus_tag="Dmel_CG14808" /gene_synonym="BEST:GH21860; CG14808; CT34621; Dmel\CG14808; DmSCG-gammadelta; EG:4F1.1; GH21860; Sgcd" /note="Sarcoglycan complex subunit protein; Region: Sarcoglycan_1; pfam04790" /db_xref="CDD:461428" ORIGIN 1 tcagttgttg tgccgccgtg aaggaggacg gtagccgtgc gcgcatacgg agcacattgg 61 tgccgctggc gttggattcg agagacgaga gagagagtgt tccaagattt cccaattcaa 121 tagtttcgaa aaatcgtttt cgagtgtttt ttttttgtct gtgctttctg gttttcgctg 181 cctgctgagc catctgacta gcgcgcctcc cgttcatggc tggcgtttgg aattgtgaag 241 gtcagcgcgt cgtcgcgatc ggactcccat ttcagtgtgt gtcgtaatcc ggccaagaga 301 tcgcgtttgt aaaagatacg aaatctgttt gctcaagaca tagtgtaaga gatacaggat 361 acgcaaccgg agagtcatgc acttcccatg catccactag ctgcagtgca gcagcgccgg 421 aatgttggcc gctggcagca gtgagatcac tgactttggg ccacactcgc gccaactaac 481 ggctggcaac acgcccaagc gacccaacaa ggccagcagc caccgtcctg gttctggttc 541 tggtcctggc ccaatgacaa ctggtggcac cagctcagcg agcggtaacg gaaacagcgg 601 tggggctctg aacgccattc ccacgacgaa ggtcgggagc ggaggaggcg gcggaggcgc 661 catgtccgcc acaacggtga ctgcgacgac ggggaaagct actgtaagcc atggccatag 721 tcatggccac gctctggggc gcagcgagac gaggagcggt cggagcgcag cagctggacg 781 ctccaatgtg gacggattcg ttggcggaat cgagacgtac ttgggcctca tcgggtggcg 841 aaaaaagtgc ctgtataccc tgctgctact gctgatgctg ctcatcatca cgaacctggt 901 gctcaccctc tggatactca aggtgatgga gttctcaacg gagggcatgg ggcagcttaa 961 aatcgtaccc ggtggcatac agctgtccgg acaagcgata attatggaca tgctgcgcgc 1021 ctccacaatc cgttcgcggc acggtcaacc catttccata gagtcatcac gtaacttttc 1081 aatcaataca cgtgatccga atggcatgat tgagaatcat ttattcctgg gacacgataa 1141 gttcgagtgc ctgtcggcgg gatttcgcat aaacgacacc aacggacgca gcctgttctc 1201 cgtgaaccga gatgaagtca ccatcggagc acatgccctg cggatcgacg gcgaaggtgg 1261 cgccgtcttc cgggaatccg tgcagacgcc ccatgtgcgg gccgagcccg gccgggagct 1321 gagactcgaa tcgcccacac gccaattgga gatgacggcg gccaaggaca tcaatttgca 1381 atcgcgggca ggaggcatag aagtcgtggc cctggaagac gtcaagttcc gagccctcga 1441 tgggagcctg cgcctggagt cctccaagat acttatgccc aacctgcgga cggcccagcc 1501 gcccattctg ggcactgccc aaagcaggga tcacatgcac cgcgtcttcc aactctgcgc 1561 ctgttccaat ggcaagcttt tcctcgctgc accccactcc atatgtgccg gcgatgattc 1621 cacggtctgc agatgattgc acgattcggc gcgctggcag tcaacatcta catcgtccac 1681 atccgataga tcccgatccc gaatccgatt ccgatccgat acggatacga atacggacac 1741 tcattaagga gctctgggtc tccgtagttc tgacagaccg gtatgcaagt atgcgattca 1801 tggcgaaacg cggagcagac cacagccata gccacaccca tacgcacacg ttcatgttga 1861 gttattaata tgctgactgg aacataggac ggtataccgt ataccgtata tgatatacca 1921 tatacccaat tagtgcaaat cacttacaca cacacacgta tagtatatga ttagccaggc 1981 gtacgcgtac atcctgcgtt cataatcgta cattaacttt catacccaca cactgtcgag 2041 ggaattgtac ccaaactcga aggacaaaat caagagcttc ttagacactt ggatgttgtg 2101 tactagtata acgaagggca tttcggagac ataggcatag tacccataga cctatatatg 2161 taatatcacc gagtcaacta actactaatg gattaaataa atagacagat atgatgtcat 2221 agtcaaacgt aggatgtcgt cagagttgag tcgaatctca catcagtatt ggcgttaatt 2281 ctatacccct cagaaatcag atcagattga acgaaactcg gttatagttc agttttggta 2341 gaaatcgcaa cacacacagc tcgccttata caaagaaagt atttctatta ggtttcgatt 2401 ataaaaatat actcgtacgt ttctttttac aactcggttt tataaatcag tatcatgaac 2461 ttggtcgatt attctttata attgttaaat ctgtcccgat tccataaagc agtccagaga 2521 tattgtacat aagactgtcc aactcataga actccaatac tgcatcatag catcaatctc 2581 agtgcaatat gaatacgaaa acaaatacaa atactgaata ggacgttcat aaccatattc 2641 atgtagataa tatcgcggac acagcaatga aatttaggaa atgtttatac gatatctaca 2701 tactacgatc agaatattca aaatccgaag cagaacgctg gtatcaaaca caatacgaag 2761 acaatgaata tcatccaata agtcgcaaga gctatttata cctacactag atacagatat 2821 taacataaat tcgagtatga gtatcaatat gaatacagaa ataaatatgg gtaaatgagt 2881 ttgaatatgg ctatggatat aaatacgaat ataaatataa aaatatgatt ataaatatga 2941 ttataattat gaatatgaat acgaatatga at