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LOCUS NM_001144690 2054 bp mRNA linear INV 26-DEC-2023 transcript variant B (Shmt), mRNA. ACCESSION NM_001144690 VERSION NM_001144690.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2054) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2054) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2054) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2054) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2054) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2054) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2054) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2054) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2054) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2054) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2054) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2054) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2054) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2054) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2054) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2054) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2054) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2054) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2054) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2054) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2054) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2054) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2054) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_001144690.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2054 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2054 /gene="Shmt" /locus_tag="Dmel_CG3011" /gene_synonym="144561_at; anon-WO03040301.100; CG3011; Dmel\CG3011; HTMLA; Q9W457; shmt; SHMT; Shmt2" /note="Serine hydroxymethyl transferase" /map="5C7-5C7" /db_xref="FLYBASE:FBgn0029823" /db_xref="GeneID:31524" CDS 521..1924 /gene="Shmt" /locus_tag="Dmel_CG3011" /gene_synonym="144561_at; anon-WO03040301.100; CG3011; Dmel\CG3011; HTMLA; Q9W457; shmt; SHMT; Shmt2" /EC_number="2.1.2.1" /note="CG3011 gene product from transcript CG3011-RB; CG3011-PB; Shmt-PB; serine hydroxymethyl transferase 2; serine hydroxymethyltransferase 2; beta-hydroxy-Epsilon-N-trimethyllysine aldolase; glycine hydroxylmethyltransferase" /codon_start=1 /product="serine hydroxymethyl transferase, isoform B" /protein_id="NP_001138162.1" /db_xref="FLYBASE:FBpp0288674" /db_xref="GeneID:31524" /db_xref="FLYBASE:FBgn0029823" /translation="MADQKLLQTPLAQGDPELAELIKKEKERQREGLEMIASENFTSV AVLESLSSCLTNKYSEGYPGKRYYGGNEYIDRIELLAQQRGRELFNLDDEKWGVNVQP YSGSPANLAVYTGVCRPHDRIMGLDLPDGGHLTHGFFTPTKKISATSIFFESMPYKVN PETGIIDYDKLAEAAKNFRPQIIIAGISCYSRLLDYARFRQICDDVGAYLMADMAHVA GIVAAGLIPSPFEWADIVTTTTHKTLRGPRAGVIFFRKGVRSTKANGDKVLYDLEERI NQAVFPSLQGGPHNNAVAGIATAFKQAKSPEFKAYQTQVLKNAKALCDGLISRGYQVA TGGTDVHLVLVDVRKAGLTGAKAEYILEEVGIACNKNTVPGDKSAMNPSGIRLGTPAL TTRGLAEQDIEQVVAFIDAALKVGVQAAKLAGSPKITDYHKTLAENVELKAQVDEIRK NVAQFSRKFPLPGLETL" misc_feature 545..1918 /gene="Shmt" /locus_tag="Dmel_CG3011" /gene_synonym="144561_at; anon-WO03040301.100; CG3011; Dmel\CG3011; HTMLA; Q9W457; shmt; SHMT; Shmt2" /note="serine hydroxymethyltransferase; Provisional; Region: PLN03226" /db_xref="CDD:215639" misc_feature order(563..565,569..571,590..595,620..622,635..637, 689..691,743..748,770..772,827..829,848..850,968..973, 1385..1387,1439..1441) /gene="Shmt" /locus_tag="Dmel_CG3011" /gene_synonym="144561_at; anon-WO03040301.100; CG3011; Dmel\CG3011; HTMLA; Q9W457; shmt; SHMT; Shmt2" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:99733" misc_feature order(632..634,692..694,722..724,833..838,917..919, 1082..1084,1157..1159,1166..1168,1241..1246,1262..1264, 1676..1678) /gene="Shmt" /locus_tag="Dmel_CG3011" /gene_synonym="144561_at; anon-WO03040301.100; CG3011; Dmel\CG3011; HTMLA; Q9W457; shmt; SHMT; Shmt2" /note="glycine-pyridoxal phosphate binding site [chemical binding]; other site" /db_xref="CDD:99733" misc_feature order(632..634,917..919,1244..1246,1676..1678) /gene="Shmt" /locus_tag="Dmel_CG3011" /gene_synonym="144561_at; anon-WO03040301.100; CG3011; Dmel\CG3011; HTMLA; Q9W457; shmt; SHMT; Shmt2" /note="active site" /db_xref="CDD:99733" misc_feature order(698..700,719..721,902..904,914..916,920..922, 1361..1363,1631..1633) /gene="Shmt" /locus_tag="Dmel_CG3011" /gene_synonym="144561_at; anon-WO03040301.100; CG3011; Dmel\CG3011; HTMLA; Q9W457; shmt; SHMT; Shmt2" /note="folate binding site [chemical binding]; other site" /db_xref="CDD:99733" ORIGIN 1 gacttgaact ggtgacccag acggatgata atcacttgac gataagcgga tcgcaaatag 61 acgcgctctc ccatccatgg ggggtcgcat tttcgatcat gggcgtgtta ttgcacccaa 121 gtcacttggt ttccctggta tttggccaat ctaatcgtgg atcgggaata gggaatcggg 181 ggagcgcctc tcgagtggtt gccatggtgc atccaggcgt aatcttcgcc ttggcgatag 241 ctgcgcctta tcgccggaac ttttccaatg ctatttgaac ccattgaacc cgtatttgtt 301 tgtaactttt cgcaaccatc ggcggcggga acataaatat tatttttgtt tcgaagcgtt 361 attaaaaaca tggcataaag ctgaccaggc agccgttcat tttccacggt ccgcacatat 421 tcaacgatcg tcttggcgag cgcatcgcac attgcacagc attccaatta ctatatatat 481 atatatataa tatacaatac tatataaatc cgaacagaat atggccgatc agaaactgct 541 gcaaaccccg ctggcacagg gcgatccgga gctggccgag ctgatcaaga aggagaagga 601 gcgccagcgc gaaggactcg agatgatcgc cagtgagaac ttcacctcgg tggcggttct 661 cgagagcctg agctcctgcc tgaccaacaa gtactccgag ggatatcccg gcaagaggta 721 ctacggtggc aacgagtaca tcgaccgcat agagctgctc gcccagcaac gcggacgcga 781 gctgttcaac ctggacgatg agaagtgggg cgttaatgtg cagccttatt ccggatcccc 841 ggccaatctg gctgtctaca cgggcgtctg ccggccccac gatcgcatca tgggcctgga 901 tctgcccgat ggcggtcact tgacgcacgg tttcttcacg cccaccaaga agatatcggc 961 cacatcgatc ttcttcgaga gcatgccgta caaagtgaac ccggagacgg gcatcatcga 1021 ttacgataag ttggcggagg cggcgaagaa tttccggccg cagatcatca ttgctggcat 1081 atcgtgctac tcccgtctgc tggactatgc gcgtttccga cagatttgcg atgatgtggg 1141 cgcctacctg atggccgaca tggcccatgt ggcgggcatt gtggccgcgg gattgatacc 1201 atcgccgttc gaatgggccg acattgtgac caccaccacg cacaagacac tgcgaggtcc 1261 gcgcgccggc gtgatcttct tccgcaaggg cgtgcgcagc accaaggcca atggagacaa 1321 ggtactctac gatctggagg agcgcatcaa ccaggcggtg tttccatcac tccagggtgg 1381 tccgcacaac aacgccgtgg ctggcattgc caccgccttc aagcaggcca agagtcccga 1441 attcaaggcc taccagacgc aggtgctcaa gaatgccaag gccctgtgcg atggcctcat 1501 ttcgcgaggc tatcaggtgg ccaccggcgg caccgacgtc catttggtgc tggtcgatgt 1561 gcgtaaggct ggcctgaccg gcgccaaggc cgagtacatc ctcgaggagg tgggcatcgc 1621 gtgcaacaag aacactgtgc ccggcgacaa gtccgccatg aatccctccg gcatccggct 1681 gggcacaccg gccctgacca ctcgcggcct tgccgagcag gacatcgagc aggtggtggc 1741 cttcatcgat gctgccctaa aggttggcgt ccaggcagcc aagctggccg gcagtcccaa 1801 gataaccgat taccacaaga cgctggccga gaatgtggag ctcaaggccc aggtggacga 1861 gatccgcaag aatgtggccc agttcagcag gaaattcccg ctgcccggcc tggagaccct 1921 gtaggtgctg cctgctttgt ttgtcccttt ttcttttgtt cgccttacga tttacatcct 1981 cgaaaagtcc gcttgttaat atcataagtg ggaattagta gttaagccat taaacgcatt 2041 tcagtttaca tacc