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LOCUS NM_001103507 3240 bp mRNA linear INV 26-DEC-2023 B (Pdcd4), mRNA. ACCESSION NM_001103507 VERSION NM_001103507.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3240) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3240) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3240) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3240) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3240) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3240) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3240) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3240) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3240) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3240) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3240) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3240) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3240) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3240) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3240) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3240) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3240) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3240) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3240) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3240) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3240) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3240) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3240) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_001103507.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3240 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3240 /gene="Pdcd4" /locus_tag="Dmel_CG10990" /gene_synonym="CG10990; Dmel\CG10990; pdcd4" /note="Programmed cell death 4" /map="12B4-12B10" /db_xref="FLYBASE:FBgn0030520" /db_xref="GeneID:32337" CDS 512..2041 /gene="Pdcd4" /locus_tag="Dmel_CG10990" /gene_synonym="CG10990; Dmel\CG10990; pdcd4" /note="CG10990 gene product from transcript CG10990-RB; CG10990-PB; Pdcd4-PB; programmed cell death 4 ortholog" /codon_start=1 /product="programmed cell death 4, isoform B" /protein_id="NP_001096977.1" /db_xref="FLYBASE:FBpp0111894" /db_xref="GeneID:32337" /db_xref="FLYBASE:FBgn0030520" /translation="MEVESNNKRATNGGRHFTPPSDSDSKESSVERELNEEIEAVELN GSGGGGHSNGHVKKLMAVEDGRIKRKAKRLIQRQNSGSGGSANQTNGNGAAGAGGAHG ASVMPLGINRIMPSPGGYVVPHRRWKNSRRSRTINRGRGLPKKGGGGGKGVWGLPGSE ALAEVYEDENDPNYDSECNDRNVELREVITEITREEFFKLAEPIVLEYYEHGDPHEVA LSFDEILQAPMREHVTSILVEIAMDHKDSQREMTSVLISDLYGRVITGKDIEKGFNML LANLPDLVLDTPEAPIMLGNFMARAVADDCIPPKFVAKSGEELRHLGLGEHAEQALRR ADSLIYKHVWAHLDNVWGMGGPLRPVKTITMQMELLLKEYLSSRDVAEAQRCLRALEV PHYHHELVYEAIVMTLESLSQTTEEAMCELLKQLDLTCLVLPAGMEQGFLRAFDDMAD IVLDVPLAYIILDRFVERCNRAGFLTDKIINNVPSRGRKRFVSEGDGGHVKPTTFTMR D" misc_feature 1100..1435 /gene="Pdcd4" /locus_tag="Dmel_CG10990" /gene_synonym="CG10990; Dmel\CG10990; pdcd4" /note="Domain in DAP-5, eIF4G, MA-3 and other proteins; Region: MA3; smart00544" /db_xref="CDD:214714" misc_feature 1598..1939 /gene="Pdcd4" /locus_tag="Dmel_CG10990" /gene_synonym="CG10990; Dmel\CG10990; pdcd4" /note="MA3 domain; Region: MA3; pfam02847" /db_xref="CDD:397128" ORIGIN 1 ctctggttca gtcgagttga gttttcacgg cgtgaacaac agtgtgcgtt attggttcct 61 tattctgcgg ttcttcaatc ctttttgttc caatcctact gaaaaagaaa tcaaaagttc 121 acatcgttaa gcggcaaaaa caacaaaagc gaagaagaga aagagaggca gggaaaaaat 181 aaaggagccc acgaagaaaa gcaacaacta ttaaacaggc tcctcatcgt ataaaagcag 241 cgcagccgcc gtcaacgtca actgcagtgg gccaacgtcg ttgcagtcgt gtcgttagtt 301 tttgttcttg ttgcagcagc agcatcaaag acagaagtag agagagcgag cgaaacagcc 361 ggagagacaa aacaaaaagc acttagaaaa gaaaagaagc cacgcacctg gtgccagagt 421 acaaaaccca aacatctaca atatccgagc tgtgcattcc aaggagataa cgaggaacgt 481 atatatcgaa gagtttgaga acatcgtcag gatggaagtg gaatcgaata acaaacgcgc 541 caccaacggc ggccgtcact tcactccacc gtcggactcc gattccaagg agagttccgt 601 cgagcgggag ctgaacgaag agatcgaggc ggtggagcta aatgggagtg gtggtggcgg 661 ccactcgaac ggccatgtta agaagctgat ggctgtcgag gatggcagga ttaagcgtaa 721 ggccaagcgg ttaatccaaa gacagaatag tggttctggc ggcagtgcca atcaaactaa 781 tggcaatgga gctgctggcg ctggtggagc acatggagca agtgtaatgc cgctgggaat 841 caacagaatt atgccgtcgc ccggtggcta tgtggtgcca catcgacgct ggaagaatag 901 ccggcgttcg cgaaccatca atcgtggtcg aggactgccc aaaaagggtg gtggcggcgg 961 caagggcgtc tggggattgc ccggttccga ggctctggcc gaggtctatg aggacgagaa 1021 tgatcctaac tacgatagtg agtgcaacga tcgtaatgtg gagctgcgcg aggtgatcac 1081 tgagataaca cgcgaggagt tctttaagct ggcggagccc attgtcttgg agtactacga 1141 gcacggggat ccgcatgagg tggcactgag ctttgatgag atactgcagg caccgatgcg 1201 cgagcacgtc accagcattc tcgtggagat cgccatggat cacaaggatt cgcagcgcga 1261 gatgacctcg gtgctgatct ccgatctcta cggacgcgtt attaccggca aggatattga 1321 gaagggattc aatatgctgt tggccaatct gccggatctc gtcctggaca ctccagaggc 1381 gccaatcatg ctcggcaatt ttatggcccg cgccgtggcc gatgactgca ttccgcccaa 1441 gtttgtggcc aagtcggggg aggagctaag acatttggga ctgggcgaac atgccgaaca 1501 ggcccttcgc cgtgctgact cgcttatcta caagcatgtg tgggcccatt tggacaatgt 1561 ctggggcatg ggtgggccac tgcgtccagt gaagacaatc accatgcaga tggagctgct 1621 gctcaaggag tacttatcat cgcgtgacgt agccgaggca cagcgctgtc tgcgtgccct 1681 cgaggtgcca cactatcatc acgagcttgt ctacgaggcg attgtcatga cactggagtc 1741 acttagccag accaccgagg aggccatgtg cgagctgctc aagcagctag atctcacctg 1801 cctggtgctg cccgcgggca tggagcaggg tttcttgcgc gccttcgacg acatggccga 1861 catcgttttg gatgtgcccc tggcctatat aatactcgat cgcttcgtcg agcgctgcaa 1921 tcgcgccgga ttcctaaccg acaagattat aaacaatgtg ccatcgcgcg gacgcaagcg 1981 tttcgtttcg gagggcgacg gcggccacgt gaagccgact accttcacca tgcgtgatta 2041 aatcataggg acaacgggga cgttatatgc tgcacatgct tatatgacca ctgcccccag 2101 ccacccaatg acaactagag gagcaacaag agagaagcaa acattaaaca aaaacaaaaa 2161 aaaaaacacc aaattacaaa aaaaaaaaac gaaaattcat acgaacgcaa agaataaata 2221 caccatttat aagaaacaaa agacgatatg aagaatttgt cgcaaacttg ataaaaagaa 2281 cttatcctca gaatccagat aaggacacaa acgaaaaaca aaaacaagca aaaaaaaaaa 2341 accacaaaaa aacaaacaat caatcggaat ttgatctccg tttaaactat attcattatt 2401 atactacata aacacctaca acgtatatct tacctacatg taactaccag cgtaattcga 2461 aagtatattt taaatatttg ttaaaaaagg agatatgagt gaaacgatca caaaaaaaag 2521 aaaaagaaag aagaatccag ccaaaagtat gcggggaacc acgagcagga gcaacaggaa 2581 cagagatggg tcgctttttg tggctaggat ctcacataaa ggatgcgagt gggcgtactt 2641 agcacgaccg tcattatgcc acatgaaatc aaagcatatt atttacatga aactgttata 2701 ggcactcgta cacacacact cacacacacc tcttgggttg attgaattga ttgaataact 2761 tgtatttgga acgaaccaat gatgatgatt tatgctatca acgcaatcaa aactctgatg 2821 attacacaaa acaaattcca ttgacttgaa attgagaaaa acatttataa tattcctatg 2881 cgcatcgaaa acatgatttt ccttaatttt tttgtaactt tgtgtgtcag aagactaaca 2941 taattaagct taattttact ttatacgtat atttacccac ggattcatct tattctgctt 3001 gctttttttt ttttttgatt gaataaaagc tgcattttat atgataagaa aaagactttg 3061 ttttcgccgc acttatattt taaaatgttc acacttcatg aagaaacaaa attcgacata 3121 ttcttaaaaa tgcgcgccca cacatctata tatatttaat atatatatct acatatatat 3181 atatataaac taatgtgtta aaagcagaaa atatacatca aaaataaaaa ttaaaaacat