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LOCUS NM_001103488 3208 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_001103488 VERSION NM_001103488.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3208) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3208) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3208) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3208) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3208) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3208) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3208) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3208) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3208) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3208) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3208) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3208) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3208) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3208) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3208) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3208) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3208) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3208) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3208) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3208) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3208) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3208) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3208) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001103488.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3208 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3208 /gene="inaF-D" /locus_tag="Dmel_CG42563" /old_locus_tag="Dmel_CG2457" /gene_synonym="anon-WO0172774.148; CG2457; CG42563; Dmel\CG42563; inaF; InaF; INAF" /map="10D8-10E1" /db_xref="FLYBASE:FBgn0260812" /db_xref="GeneID:32126" CDS 286..1347 /gene="inaF-D" /locus_tag="Dmel_CG42563" /old_locus_tag="Dmel_CG2457" /gene_synonym="anon-WO0172774.148; CG2457; CG42563; Dmel\CG42563; inaF; InaF; INAF" /note="CG42563 gene product from transcript CG42563-RB; CG42563-PB; inaF-D-PB" /codon_start=1 /product="inaF-D" /protein_id="NP_001096958.1" /db_xref="FLYBASE:FBpp0290482" /db_xref="GeneID:32126" /db_xref="FLYBASE:FBgn0260812" /translation="MNSKHSSLEEKVKLPPTETISRCYQPQQSNRKVIRILTVAVYVL CVSLAAIMLSLYYIFIWDPTIRPFVTKATHCDKIVIPEKIAIRLLNSSEVTAEQFYKH ILEQYRILSHMQQQRQQLLQRQHLQLQQLEANNRFQEVFATATIIQAHPHPHPHPREP PKKPLLGPYSPQPGNISHAMGGDQLDAETEQGHMPLILDTSPPVEVTGMGHLKRKTHR GHYKHHRARAGGQKKLSIANSMASSTPSTTAGGDASMATAATLPHGYMDAPLNPAAGT IVQAPQLQLYTSMPIPLILSPSDEKRPSHHAHGHVHGERRNGAQSGGRRRTTTASVSG YEAQTYLNPFLTGELIFEK" misc_feature 376..477 /gene="inaF-D" /locus_tag="Dmel_CG42563" /old_locus_tag="Dmel_CG2457" /gene_synonym="anon-WO0172774.148; CG2457; CG42563; Dmel\CG42563; inaF; InaF; INAF" /note="TRP-interacting helix; Region: InaF-motif; pfam15018" /db_xref="CDD:464449" ORIGIN 1 agtttttgcg cgcccttttt tgtactttta agctcgccac gcataaacaa caataataaa 61 ttaattcaaa tcaaatatat atcatttaca tgtaaaacta atcgcgtgtg gcaagctaag 121 aaccgaaaag aactttgcat ttatcaaaca aaaacaaaat actagactat aacgggacac 181 tgccaaaaca acgtgaagag aattcaaata aatttttaga ggaaagctac caaaatcaag 241 aagagccata tcgaaacaat caaaaaacaa acgatcgaat caaaaatgaa ctcgaaacac 301 agttcgctgg aggagaaagt gaaactgccg cccacggaga caataagccg atgctaccag 361 ccgcagcaaa gcaaccgcaa ggtcatccgc atcctgaccg tcgccgtcta tgtcctttgc 421 gtttcactgg cggccatcat gctatcccta tactacatct tcatctggga ccccaccatc 481 cggccctttg tcaccaaggc cacgcattgc gataaaattg tgatacccga gaaaatagcc 541 attcgcctcc tgaactcatc ggaagtgacc gcggagcagt tctacaagca catcctcgag 601 cagtaccgca tcctcagcca catgcaacag cagcgccagc aactgctgca gcgccaacat 661 ctccaactgc agcagctgga ggcaaacaat cgcttccagg aggtctttgc cacggccacc 721 atcattcagg cacatccgca tccccatcca catcccaggg agccgcccaa gaagccgctt 781 ttaggaccat atagcccgca acccggcaac ataagtcacg ctatgggtgg tgatcagttg 841 gatgcagaaa cggagcaggg tcacatgcct ctaatcctgg atacctcacc gccggtcgaa 901 gtaaccggaa tgggtcacct gaagcggaag acacatcgcg gtcactacaa acatcataga 961 gcccgagccg gtggtcaaaa gaaactgtcc attgccaatt cgatggccag ctccacgccg 1021 agcaccacag ccggaggaga tgcgtcaatg gccactgcgg ccactttgcc acatggttat 1081 atggacgctc cactaaatcc ggcggcagga accattgtcc aggcaccaca actgcagcta 1141 tacacctcga tgcccattcc actgatcctg agtcccagcg acgaaaagcg tccttcgcac 1201 cacgcccacg gacatgtcca tggcgagagg cggaacgggg cgcaatccgg cggccggcga 1261 aggaccacga cggcatcggt ttctggctac gaggcgcaga cctacctcaa tccgtttctc 1321 accggcgagc tgatcttcga gaagtaaggg actgcaccca gatcaggaaa cgtcgcggtt 1381 cattgttttt tttttttttt ttttttaatg catgtagagg gatatacact acagtcaaga 1441 tcggaattgg agattagctc atagaaatgg taactgccca agaaacaaaa aaagaaatga 1501 ctaacaaatg ggcaataata ccctcaatac cttgtcatac ctatttgaat ggagaaataa 1561 ctcagttaag ctcagtactg gcataagcat ggggaaaata tttcaattaa tcagttcgag 1621 tagatatgtt ttccaaattg atagcgatat tagacatttc atattgaaat ttacaggtac 1681 aaatataatc tcagttaatg cgtagaatgc gtttgcaatt gaacaaattt aacgttttat 1741 agcaagaact taggaacaaa agttgtactc gcttattcta taataatgtt aactaaagcc 1801 aaagcaagta gatcggttgt ataactcatt tctgctatag ataagtcttg acttgtatca 1861 gtactgagct ataaattggt ccatatatac gtagccaggc ctggccacat atagaggtta 1921 ataaacgtta tgtactgcaa aaggatagtt gaaaccatag ctaaacgata gtcgatgtac 1981 caaccacact ccactccaat ccaatccaat ccaatccact caaatcaatt caaaacaaca 2041 cactcgtaag ggacacacac tcacgcataa tacgggaccc acttcagtag aaagtcacac 2101 gatatcagcg atcacggatc acgaattacg gatcacggaa tacgtatcac ggatcacaca 2161 ggcggctcac ctcaccaagc tcagcagcaa actcacccca cctaggacac tgcttccagg 2221 cagctagcga acgctacacc aactacaata attagccaac cctagagtaa tcagtttacc 2281 agtaaacagt aaccagtaac tagtaatcaa ttaccaatta ccagtaaccc atccaaggag 2341 tatacccccc ttgcaaacgg ggaagcggat aaatgtcact agaattcagc atcatcagat 2401 tgaatcacac acaatcctag tcgcctcacg cgaagagaac tatgtcatga tcagatatcg 2461 gtgtatgcat tctatattat gtacttcgaa atatgtaatt tattaagttt tcgctatact 2521 tttcattcaa attggcaaaa accaattcaa aggttttcaa tattttcgaa aagcatttta 2581 ggctttctat gtaacgtatg tttttcaaac aaaatattag tttttgaaac tttattatcg 2641 gataaacaaa tgtaagccaa attacaacgt ttatgatact ccaaagattc gcactataaa 2701 gcccacgaaa gtggcctaaa aatagctgac gcattaccca taggcgcttc gcttctcaag 2761 ataaaacctg gcgtgctcaa ctcaagaaca aatatgtggt tatatacata tatacatata 2821 tggggcatat aaccgatgtg tgacgtgaca ttggctcgtt ctattcacat acttaaacac 2881 taaatgcaaa cctatcaaaa accaactaca ctaagcgaaa aagcggcaga gatagttaag 2941 gaaagtggtc aagagaggac gagagagaga gagagagaaa gtgaaagtga aagggagaga 3001 tagtaaaact gcatctgcat ccaaagacac gagaattgaa ttcatcaata ataacatacg 3061 tataaacgat atgcatacga tatagaattg aatctgtaac tgatgggcat ataccgcata 3121 tatatcttat ataccgcata tatcttatat atgtatacca agaaaaacaa agtcattttg 3181 gcaataataa agcatagcaa acaacaat