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LOCUS NM_001103449 3105 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_001103449 VERSION NM_001103449.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3105) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3105) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3105) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3105) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3105) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3105) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3105) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3105) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3105) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3105) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3105) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3105) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3105) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3105) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3105) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3105) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3105) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3105) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3105) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3105) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3105) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3105) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3105) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_001103449.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3105 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3105 /gene="lz" /locus_tag="Dmel_CG1689" /gene_synonym="amx; CG1689; Dmel\CG1689; fs(1)A1569; fs(1)M69; Lozenge; Lz; LZ; spe" /note="lozenge" /map="8D5-8D6" /db_xref="FLYBASE:FBgn0002576" /db_xref="GeneID:31883" CDS 223..2340 /gene="lz" /locus_tag="Dmel_CG1689" /gene_synonym="amx; CG1689; Dmel\CG1689; fs(1)A1569; fs(1)M69; Lozenge; Lz; LZ; spe" /note="CG1689 gene product from transcript CG1689-RB; CG1689-PB; lz-PB; spectacled; lozenge" /codon_start=1 /product="lozenge, isoform B" /protein_id="NP_001096919.1" /db_xref="FLYBASE:FBpp0111726" /db_xref="GeneID:31883" /db_xref="FLYBASE:FBgn0002576" /translation="MHLHLLAAEKTPPSPSPNPTPTPSASPSGHTGAAGESQLDLASQ TESQLQLGLPLASGYGLGLGLGLGLGLGLGQELVADHSTTVAPVSVAGPGRLGRSING SGGSHHHHHLHHHYSPYHHAHPYHPPHPHAPHHHHHHHPPYPYPPAGPHPPAMVTSSS TSPTGNGWSSSTGDFKGITAVATATGGGVGGATQGATASTGATAAEVLAVSSSASVGS SSPTGGASNGTAHSGHSGHTGGHSSSTASNNNNNGASNSNSNNNNAVHQDLLWMERLV QKRQQEHPGELVRTSNPYFLCSALPAHWRSNKTLPMAFKVVALAEVGDGTYVTIRAGN DENCCAELRNFTTQMKNDVAKFNDLRFVGRSGRGKSFTLTITVATSPPQVATYAKAIK VTVDGPREPRSKTTAEMMGAGEWTNGSSSSAAAYYHSHAHHPHAHHAHAHLQHQMALP PPPPPPAAAPVSVGVGGNGATMGMGMGVGVGMGMNHYGGGYDSANSLEAGQYAAHLPA VLPEMHGHGFATDPYQTAGYGGGNTGGGSASKSELDYGGSYNQAWSNGYQNYQYGSCL ATAQYGPQAAPPPQPPPPPPVVLCPQLYSTVNQNQIHLHLHSSEKLEQYLGTATSADH LTIGSLTGSSRSSIEIGQDQYHQQVHHAQQQQQQQQQQQQVHHPQQQQVESAGEVGGS GAGGVESAREEDVGDLSQVWRPY" misc_feature 1063..1434 /gene="lz" /locus_tag="Dmel_CG1689" /gene_synonym="amx; CG1689; Dmel\CG1689; fs(1)A1569; fs(1)M69; Lozenge; Lz; LZ; spe" /note="Runt domain; Region: Runt; pfam00853" /db_xref="CDD:459963" ORIGIN 1 cacctcgctt acgtgttaac cctttttttt tgtaacttgt gcttaagtca cttaaagaaa 61 taccgaagaa agtaaactaa gtgtgtgtag attagagttt attgatgagt gaacaaaaga 121 caccgccgga gcgaagtgtg ataagcgctt gacctgcgac ccgcacacac tgcaagaaaa 181 aaaggggcaa gcgagcggat caaaggtcac cgccgtcgac gaatgcattt gcatctcctg 241 gcggcagaga agacgcctcc atctccatct ccaaatccaa ctccaactcc atcagcatct 301 ccatctgggc atacgggcgc tgctggggag tcgcaattgg acttggcatc gcaaacggaa 361 tcgcaattgc agctgggctt gccattggct tccggatacg gactcggact cggattggga 421 ctgggcttgg gattgggact gggccaggaa ttggtggcgg accacagcac cactgtggcg 481 cccgtcagcg ttgccggtcc cggccgcctg ggtcgcagca tcaacggcag cggcggcagc 541 caccaccatc accacctgca ccaccactac tcaccgtacc accacgccca cccctaccac 601 ccaccgcatc cgcacgcgcc ccaccaccac caccaccacc acccaccgta tccgtatccg 661 ccggcaggac cacatccgcc ggccatggtc acatcgtcat ccacatcgcc gacgggcaac 721 ggctggagca gctccaccgg cgacttcaag ggcatcacag cggtggcgac ggccactggc 781 ggcggcgtag gtggtgccac ccagggcgcc actgcatcca cgggcgccac agccgctgag 841 gttttggccg tttcgagtag tgccagtgtt ggcagcagct cgcccacagg tggcgccagc 901 aatggtacag cccatagtgg gcatagtgga cacaccggcg gtcacagcag tagtaccgcc 961 agcaacaaca acaacaacgg tgccagcaat agcaatagca acaataacaa cgccgttcac 1021 caggatctat tgtggatgga gcgattggta cagaagcgac aacaggaaca tcccggcgaa 1081 ttggtgcgca cgagcaatcc gtacttcctg tgctccgccc tgcccgccca ttggcgctcc 1141 aacaagacgc tgccgatggc cttcaaggtc gtcgctctgg cggaagtggg cgatggcacc 1201 tatgtcacca tccgggcggg aaacgatgag aattgctgcg cggagctgcg caacttcacc 1261 acccagatga agaacgacgt ggccaagttc aatgatctgc gtttcgtggg acgcagcgga 1321 agagggaaga gcttcacgct gaccatcacg gtggccacga gtccgccaca ggtggcaacc 1381 tacgccaaag ccatcaaggt gaccgtcgat ggaccccgcg agccccgctc caagacaaca 1441 gccgaaatga tgggcgccgg cgaatggaca aatggatcct cgagttcggc ggctgcctac 1501 taccacagcc acgcccatca tccgcacgcc caccacgccc acgcgcacct gcaacaccag 1561 atggccttgc caccgccgcc gccgccaccc gctgcggcac ccgtttcggt gggcgtgggc 1621 ggcaatggag ccaccatggg catgggcatg ggagtgggag tgggcatggg catgaatcac 1681 tacggcggtg gctacgactc ggccaactcg ctggaggcgg gccagtatgc cgcccacctg 1741 ccggcggtgc tgcccgagat gcatggccat ggattcgcca ccgatcccta ccagacggcc 1801 ggctatggcg gtggcaatac gggcggaggc agtgcatcca aatcggaact ggactatggc 1861 ggcagctaca atcaggcgtg gtcgaatggc tatcagaact atcagtatgg cagttgtttg 1921 gccaccgccc agtacggtcc tcaggcggcg ccgccaccac agccaccgcc tccgccgccg 1981 gtggtgctgt gcccgcagct gtactccacg gtcaatcaga atcaaatcca cctgcatctg 2041 cacagcagcg agaagctgga gcagtatctg ggcacggcca ctagtgcgga ccatctcacc 2101 attggatccc tgacgggcag cagtcgttcc agcattgaaa ttggccagga tcagtaccac 2161 cagcaggtgc accacgcaca gcagcagcaa cagcagcagc agcaacaaca acaggtgcac 2221 cacccacagc agcagcaggt ggaatccgct ggcgaagtgg gtggcagtgg tgccggcgga 2281 gtggaatccg ccagggagga ggacgtgggc gatctctcgc aggtgtggcg accctattga 2341 cccaaccgga tcattcagcg atcagcgccg accggtatcc acctgcaccc acatctgaat 2401 ctgaatccga atccaaatct gaatcccagc cacccaccgc tgcacctgca catcgaactg 2461 aactaggaga gcagcaggat caccacaaga actgtacaat tttttgtatc tttttttttt 2521 ttgtagcaaa taacgtatgt ctaagtaatc ccaaaatatc tgcaagttgt acataaagta 2581 aagaataatt ttgagagatt aggcgcccta acttcaagag ctcagaacta atgaaataaa 2641 acccaactcc tatcttaaat tatacttaca tttcagtcca attaacatta tactctatat 2701 tatcttttgt tttgagttca gaagggttca gctgcagcat aacgggaaag tctataataa 2761 tatataatac tagtaaatga tgtaaacccg tacaagaaac acattaaacg aggtgtaaat 2821 aatagagagc ttaagcataa gatgaaagta taatataatc taatccctaa tcctagcgta 2881 tagagcaccc aaatccctac aaaccacctt tttttttact agccctaagt cttgaaggat 2941 actcgataaa gccgcacaac tatctataaa tatatataaa tacatacgta tttatacatt 3001 ttttttctgt tactttatgt gtgggaatct gccaaaggat tcgaagatga cagtaaaaaa 3061 ctgaacgatg aagaagagaa gactataaat aaagttatcg tattt