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Drosophila melanogaster TATA box binding protein-related factor 2


LOCUS       NM_001103435            7131 bp    mRNA    linear   INV 26-DEC-2023
            (Trf2), transcript variant E, mRNA.
ACCESSION   NM_001103435
VERSION     NM_001103435.3
DBLINK      BioProject: PRJNA164
            BioSample: SAMN02803731
KEYWORDS    RefSeq.
SOURCE      Drosophila melanogaster (fruit fly)
  ORGANISM  Drosophila melanogaster
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
REFERENCE   1  (bases 1 to 7131)
  AUTHORS   Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St
            Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K.,
            Strelets,V., Russo,S.M. and Gelbart,W.M.
  CONSRTM   FlyBase Consortium
  TITLE     Gene Model Annotations for Drosophila melanogaster: Impact of
            High-Throughput Data
  JOURNAL   G3 (Bethesda) 5 (8), 1721-1736 (2015)
   PUBMED   26109357
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7131)
  AUTHORS   Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St
            Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B.,
            Russo,S.M. and Gelbart,W.M.
  CONSRTM   FlyBase Consortium
  TITLE     Gene Model Annotations for Drosophila melanogaster: The
            Rule-Benders
  JOURNAL   G3 (Bethesda) 5 (8), 1737-1749 (2015)
   PUBMED   26109356
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 7131)
  AUTHORS   Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I.,
            Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R.,
            Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G.,
            Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N.,
            Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A.,
            Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E.
  TITLE     The Release 6 reference sequence of the Drosophila melanogaster
            genome
  JOURNAL   Genome Res 25 (3), 445-458 (2015)
   PUBMED   25589440
REFERENCE   4  (bases 1 to 7131)
  AUTHORS   Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M.,
            Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F.,
            Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E.
  TITLE     Sequence finishing and mapping of Drosophila melanogaster
            heterochromatin
  JOURNAL   Science 316 (5831), 1625-1628 (2007)
   PUBMED   17569867
REFERENCE   5  (bases 1 to 7131)
  AUTHORS   Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
  TITLE     The Release 5.1 annotation of Drosophila melanogaster
            heterochromatin
  JOURNAL   Science 316 (5831), 1586-1591 (2007)
   PUBMED   17569856
  REMARK    Erratum:[Science. 2007 Sep 7;317(5843):1325]
REFERENCE   6  (bases 1 to 7131)
  AUTHORS   Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D.,
            Ashburner,M. and Anxolabehere,D.
  TITLE     Combined evidence annotation of transposable elements in genome
            sequences
  JOURNAL   PLoS Comput Biol 1 (2), 166-175 (2005)
   PUBMED   16110336
REFERENCE   7  (bases 1 to 7131)
  AUTHORS   Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A.,
            Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A.,
            Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W.,
            Celniker,S.E., Rubin,G.M. and Karpen,G.H.
  TITLE     Heterochromatic sequences in a Drosophila whole-genome shotgun
            assembly
  JOURNAL   Genome Biol 3 (12), RESEARCH0085 (2002)
   PUBMED   12537574
REFERENCE   8  (bases 1 to 7131)
  AUTHORS   Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J.,
            Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E.,
            Rubin,G.M., Ashburner,M. and Celniker,S.E.
  TITLE     The transposable elements of the Drosophila melanogaster
            euchromatin: a genomics perspective
  JOURNAL   Genome Biol 3 (12), RESEARCH0084 (2002)
   PUBMED   12537573
REFERENCE   9  (bases 1 to 7131)
  AUTHORS   Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S.,
            Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E.,
            Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L.,
            Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D.,
            Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J.,
            Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M.,
            Rubin,G.M. and Lewis,S.E.
  TITLE     Annotation of the Drosophila melanogaster euchromatic genome: a
            systematic review
  JOURNAL   Genome Biol 3 (12), RESEARCH0083 (2002)
   PUBMED   12537572
REFERENCE   10 (bases 1 to 7131)
  AUTHORS   Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W.,
            Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E.,
            Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M.,
            Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S.,
            Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M.,
            Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W.,
            Gibbs,R.A. and Rubin,G.M.
  TITLE     Finishing a whole-genome shotgun: release 3 of the Drosophila
            melanogaster euchromatic genome sequence
  JOURNAL   Genome Biol 3 (12), RESEARCH0079 (2002)
   PUBMED   12537568
REFERENCE   11 (bases 1 to 7131)
  AUTHORS   Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D.,
            Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F.,
            George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N.,
            Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X.,
            Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D.,
            Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L.,
            Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D.,
            Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M.,
            Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S.,
            Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P.,
            Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A.,
            Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B.,
            Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I.,
            Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S.,
            Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C.,
            Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S.,
            Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z.,
            Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J.,
            Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J.,
            Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z.,
            Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C.,
            Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A.,
            Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C.,
            McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C.,
            Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L.,
            Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K.,
            Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S.,
            Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K.,
            Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I.,
            Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C.,
            Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R.,
            Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A.,
            Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT,
            Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F.,
            Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H.,
            Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O.,
            Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C.
  TITLE     The genome sequence of Drosophila melanogaster
  JOURNAL   Science 287 (5461), 2185-2195 (2000)
   PUBMED   10731132
REFERENCE   12 (bases 1 to 7131)
  AUTHORS   Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R.,
            Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R.,
            Smith,E., Yu,C. and Rubin,G.
  CONSRTM   Berkeley Drosophila Genome Project
  TITLE     Drosophila melanogaster release 4 sequence
  JOURNAL   Unpublished
REFERENCE   13 (bases 1 to 7131)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   14 (bases 1 to 7131)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2023) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   15 (bases 1 to 7131)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   16 (bases 1 to 7131)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (20-APR-2020) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   17 (bases 1 to 7131)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (22-APR-2019) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   18 (bases 1 to 7131)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAY-2018) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   19 (bases 1 to 7131)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (07-DEC-2016) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   20 (bases 1 to 7131)
  AUTHORS   Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R.,
            Park,S., Svirskas,R. and Karpen,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
            Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne
            Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA
  REMARK    Direct Submission
REFERENCE   21 (bases 1 to 7131)
  AUTHORS   Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S.,
            Svirskas,R. and Rubin,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
            Lawrence Berkeley National Laboratory, One Cyclotron Road, MS
            64-121, Berkeley, CA 94720, USA
  REMARK    Direct Submission
REFERENCE   22 (bases 1 to 7131)
  AUTHORS   Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
  CONSRTM   Drosophila Heterochromatin Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project,
            Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron
            Road, Mailstop 64-121, Berkeley, CA 94720, USA
REFERENCE   23 (bases 1 to 7131)
  AUTHORS   Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive,
            Rockville, MD 20850, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by FlyBase. This
            record is derived from an annotated genomic sequence (NC_004354).
            
            On Jan 16, 2013 this sequence version replaced NM_001103435.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider :: FlyBase
            Annotation Status   :: Full annotation
            Annotation Version  :: Release 6.54
            URL                 :: http://flybase.org
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7131
                     /organism="Drosophila melanogaster"
                     /mol_type="mRNA"
                     /db_xref="taxon:7227"
                     /chromosome="X"
                     /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2]
                     bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]"
     gene            1..7131
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="TATA box binding protein-related factor 2"
                     /map="7E7-7E9"
                     /db_xref="FLYBASE:FBgn0261793"
                     /db_xref="GeneID:31773"
     CDS             964..6111
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="CG18009 gene product from transcript CG18009-RE;
                     CG18009-PE; Trf2-PE; lethal (1) G0295; lethal (1) G0425;
                     TBP-related factor 2; lethal (1) G0039; TBP related factor
                     2; lethal (1) G0071; TATA box-binding protein related
                     factor 2; TBP-like factor"
                     /codon_start=1
                     /product="TATA box binding protein-related factor 2,
                     isoform E"
                     /protein_id="NP_001096905.1"
                     /db_xref="FLYBASE:FBpp0111840"
                     /db_xref="GeneID:31773"
                     /db_xref="FLYBASE:FBgn0261793"
                     /translation="MGSAVKKGDGSPTRILEEYQVARDLRNEDLFPEHPVEHPDEDSD
                     KENQSPNQSPNPRAIGDCEQGPDIGKDTLNPNEADQFSSEEVEKNEANSSCNESGGDA
                     RNSRDRLSSSHSEDEQLNQEYSTSSSGSTIGNREQGSDVGKDTSSRNEADQFSNEEVE
                     KNEANSSGNESYGDACNSSDRLSSSNSEDEQLHQEYSTSSRGRTREYAQSDLNPGYQD
                     LNIGNQDLNQVNREYQESNNEYQVSNQEYQHLNTEYQELNHGDQDSNDEYQELNHGNQ
                     DSNDEYQESNHGNQDSNDEYQELNHSNQDSNDEYQELNHGDQDSSDEYQDLNHVNQDS
                     NHEYQAWNHEYQDSNHEYQALNREYQYPESDEEEAARKRNIYTRLRSYACQVHLPRLG
                     ESEVDSDDRRHNPINQPFNQPINRPNQKSDSSLESSSPERQDSESESRQASDEESSSG
                     DSDYLIDPVTGWLSRRRETSTEREEKSDQSQQESSEEITDEQKEESDDVEQQSPAEHT
                     SSDRRDHSPDKQQNKRKSLGTGNSSYSKKPLLDGDKGDPRSHLSSLGSRRSLKRKWPF
                     DCTDSKKFKPNLQSEEDKSEEEKREDTESECSDEEDSDSSSFDTDSNSDSDSNLDLDS
                     DSDSHSDFESSSSSEESAQDPAPEGETDQDPAPEGEADQDPAPEGGVDQDPAPEGGVD
                     QDPAPEGEVDQDPAPEGESDQDLAPEGGVDQDPAPEFGTDQDPHPYYNDQDPAPYYDD
                     QDPASYYDDHICDSEEDYKPFIFSKERKFLKFVTNPLGDDKSSLDLSIQLYKVFGAYK
                     LEDVYSSIDEEGQPEQDLQLKQQQKHLKKYQKLQLVVFWHQEKFFSKEQLLLYEYLKL
                     LLQKFFPQEQQEKRLQQEKLLQQEKLLQQEKRLQQEKRLQQEKRLQQEKRLQQEKRLQ
                     QQKLLQQQKLLQQEKLLQQQKLLQQEKLLQQEKLLQQEKQLQQEKHLPQERQLQQDKV
                     FLQLRQLQQKKELEEQRERKRHLFEQQKQFVLEKLRQQKEQHRRQQNRVKRERKLRQK
                     KEKQRLEYERFLKEYREDCKRQLRLQREHYLIKIKQLEKASQRSLKGNRKHKLMQNDM
                     VSIPVANLNGGLKAASSGSGVGVVTSGGVVSSAVLANAPRVYLTPSSTFMTNRQMAGV
                     ASTGRMSGQVVGGSSGTASTAGTVRYFSQFSKMQTAGGPSLQRKLANGDTIVLATGSK
                     NMFLTSSENKANLPTVASNGNGLITAKMDLLEEEVMQSITVIDDDDEEKKEVAEDEEE
                     SSNNAKPIDLHQPIADNEHELDIVINNVVCSFSVGCHLKLREIALQGSNVEYRRENGM
                     VTMKLRHPYTTASIWSSGRITCTGATSESMAKVAARRYARCLGKLGFPTRFLNFRIVN
                     VLGTCSMPWAIKIVNFSERHRENASYEPELHPGVTYKMRDPDPKATLKIFSTGSVTVT
                     AASVNHVESAIQHIYPLVFDFRKQRSAEELQHLRQKQRLQAGGDPHELEKNVLADNKT
                     ASLDNIFVNTTAAHSKSSSNDQTSAPATILSSTVDSMPRLKQMVNYHQMMKQTQEERR
                     HIMFNGEKANPASTSSAAAAPSTSSSSSSSGDNICANARRRATECWATKLQNKRPRYN
                     DPGTTGTINAASSTASAATSSLASQATHLRNPLKTAALANARMLGAKVTTCTRNSIIV
                     QQPQRIQMQQQQQQLQPQQQQTSFSPSEFDVDDLIEEEENNELDMPF"
     misc_feature    <2893..3159
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="hypothetical E4 protein; Provisional; Region:
                     PHA03418"
                     /db_xref="CDD:177646"
     misc_feature    <3634..>4227
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="Family of unknown function (DUF5401); Region:
                     DUF5401; pfam17380"
                     /db_xref="CDD:375164"
     misc_feature    4810..5331
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="TBP-like factors (TLF; also called TLP, TRF, TRP),
                     which are found in most metazoans. TLFs and TBPs have
                     well-conserved core domains; however, they only share
                     about 60% similarity. TLFs, like TBPs, interact with TFIIA
                     and TFIIB, which are part of the...; Region: TLF; cd04517"
                     /db_xref="CDD:239953"
     misc_feature    order(4825..4830,4834..4836,4912..4917,4927..4929,
                     4933..4935,4954..4956,4960..4962,4972..4974,4978..4980,
                     4984..4986,4990..4992,5080..5082,5095..5097,5101..5103,
                     5188..5193,5206..5208,5245..5247,5251..5253,5257..5259,
                     5269..5271)
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="putative DNA interaction surface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239953"
     misc_feature    order(4870..4872,4891..4899,4903..4905,4915..4917,
                     4933..4935,4939..4941)
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="putative TFIIA interaction surface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:239953"
     misc_feature    order(5131..5136,5170..5184,5191..5193,5206..5208)
                     /gene="Trf2"
                     /locus_tag="Dmel_CG18009"
                     /gene_synonym="CG11195; CG18009; Dmel\CG18009; dTrf2;
                     dTRF2; dTRF2L; dTRF2S; l(1)G0039; l(1)G0071; l(1)G0295;
                     l(1)G0425; p79/TRF2; TLF; trf2; TRF2; TRF2S"
                     /note="putative TFIIB interaction surface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:239953"
ORIGIN      
        1 gctcaaagtg aaacggccaa acgaagaaga cgtatcgtgt gtgctcagac ttgtgctctc
       61 aaaatttttg gtcaactaca ttattcagct ctgtttagag ttttaactaa aaaagatcac
      121 aagccaaaaa aaaaaaaaac aaagagaaac ctaaagaaat atcaaccaaa agtgtgcaaa
      181 atccaaaaga ttctacaatc cgaatcgaaa acaaaaacat aagaaccaca aaagcagcag
      241 cagaaagaga cacagagagc agcgaaaact taactgcgaa ttcagcggct gaagcaaagc
      301 agcggagccc aagtgcaagc gagacggcag cagagctccg ctgcaaggca acgggataga
      361 aagagagata aatagagaga cagcgcagca gcgatataga gtgagagcag gcgggagagc
      421 gagtagcggc agcgacagca acacagccac aaaagagatc gtgagaggga gggagagcta
      481 gacgacgacc tactacacaa aaaaaggctc tgtggtcgcg attaccagcg tctacgacaa
      541 gctagaaaac aaaaaaaaga aaaaatcatt caaataatta agactgctaa acggaacaac
      601 taaaaactac aagcaaattt aaccaggaga aaagaacgga agactagaca taatcataaa
      661 catagtagat agaattagag aaccagcaaa cccaacaact agaacactaa gaaaacatta
      721 attctaatac aaaatcacac ataaaaaagt attttttggc cttaagtgca aacatactca
      781 catacaaaca catacataca catccacatg aacgaaacaa tggaaagaat gtaatacaac
      841 accaaggaag aatcaccttt agccttatat acaattaaat ataattaaga agctagcaag
      901 aaaacgcaga gcaagagtcc tatcaagaaa cccaaaaaga taacaagaaa tattttttta
      961 acgatgggca gtgccgtcaa aaagggggat ggttccccga ctcgaatact tgaagaatac
     1021 caagtagcta gagacttaag gaacgaggat ttgtttccgg aacatccggt tgaacatccg
     1081 gacgaagatt cggataagga gaaccaatcg ccgaatcaat cccccaatcc aagagccatc
     1141 ggtgattgtg agcaaggacc tgacattggt aaagatactc taaatcccaa cgaagctgac
     1201 cagttttcga gcgaagaagt tgagaagaac gaagccaaca gcagctgtaa cgagtcgggc
     1261 ggggatgctc gcaattctag agatcgttta agttcctctc atagcgagga cgaacagctt
     1321 aaccaagaat attcaacttc atcaagcgga agcaccatcg gaaatcgtga gcaaggctct
     1381 gacgttggta aagatacttc aagtcgcaac gaagctgacc agttttcgaa cgaagaagtt
     1441 gagaagaacg aagccaacag cagcggtaac gagtcgtacg gggatgcctg caattctagt
     1501 gatcgcttaa gttcttctaa tagcgaggac gaacagctgc accaagaata ttcaacttca
     1561 tcaagaggaa gaacaaggga atatgcacaa tctgacttga atcccgggta ccaggacttg
     1621 aatatcggta accaggactt gaatcaagtt aatcgcgagt accaggagtc taataacgag
     1681 taccaggttt caaaccaaga gtaccagcac ttgaataccg agtaccagga gttgaatcac
     1741 ggcgatcagg actcaaatga cgagtaccag gagttgaatc acggcaacca ggactcaaat
     1801 gacgagtacc aggaatcaaa tcacggcaac caggactcaa atgacgagta ccaggagttg
     1861 aatcacagca accaggactc aaatgacgag taccaggagt tgaatcacgg cgatcaggac
     1921 tcaagtgacg agtaccagga tttgaatcac gtcaaccaag actcaaatca cgagtaccag
     1981 gcttggaatc acgaatacca ggactcaaat cacgagtatc aggccttgaa tcgagagtac
     2041 caatatcctg aatctgatga ggaagaggcc gctagaaaaa gaaacatata tacccgttta
     2101 cgatcctacg cttgtcaggt acatctccct cgtttaggag aatcagaagt tgatagcgac
     2161 gatcgtcgcc ataacccaat caatcagcca ttcaatcagc caatcaatag gccaaatcaa
     2221 aaatcggatt catctttaga gtcatcttcg ccggagagac aagactctga aagcgagtcg
     2281 cgacaagctt cagatgagga atcgtcttct ggggactcgg actacttaat cgatccagtt
     2341 actgggtggc tatcgcgccg gcgagaaact tctaccgaac gcgaggaaaa aagcgaccaa
     2401 agccaacagg agtcgtcaga ggaaattaca gacgaacaga aggaagaaag cgacgacgtc
     2461 gaacaacagt cgccggctga acatacttct tctgatagac gcgatcattc gccagacaag
     2521 caacagaata agcgaaaatc gttaggcact gggaattctt cgtattcgaa gaaaccatta
     2581 ttggacggtg acaaaggaga cccacgttca catttatcgt ctctgggaag tcgcagatcc
     2641 ttaaagcgta aatggccttt tgattgtaca gactctaaga aatttaaacc aaacttgcag
     2701 agtgaggaag acaaatctga ggaggaaaaa cgtgaagata cggaaagcga atgctctgac
     2761 gaagaagact cagatagttc aagtttcgat acagattcaa attcagattc agattcaaat
     2821 ttagatttag attccgattc cgattcccat tccgatttcg aatcatcttc aagttctgag
     2881 gaatctgccc aggatccagc tcctgaaggc gaaaccgatc aagatccagc tcctgaaggc
     2941 gaagccgatc aagatccagc tcctgaaggc ggagtcgatc aagatccagc tcctgaaggc
     3001 ggagtcgatc aagatccagc tcctgaaggc gaagtcgatc aagatccagc tcctgaaggc
     3061 gaatccgatc aagatctagc tcctgaaggc ggagtcgatc aagatccagc tcctgaattc
     3121 ggaaccgatc aagatccaca tccttattac aacgatcagg atccagctcc ttattacgac
     3181 gatcaggatc cagcttctta ttacgacgat cacatttgtg attctgagga ggattataaa
     3241 ccatttatct tctcaaagga aaggaagttc ttgaaattcg taacaaatcc tttaggggat
     3301 gataaatcta gtttggacct tagcatacag ctctataagg tatttggagc ttacaaactg
     3361 gaagacgtat acagcagtat tgatgaggaa ggccaaccag aacaggacct gcaactgaag
     3421 cagcaacaga aacatttaaa aaaatatcaa aagttgcaac tggtggtatt ctggcaccag
     3481 gagaaattct tttcaaagga gcaactgttg ctatatgagt atctgaaact acttttgcag
     3541 aaattctttc cacaagagca acaggagaaa cggttgcaac aggagaaact tttgcaacag
     3601 gagaaactct tgcaacagga gaaacggttg caacaggaga aacggttgca acaggagaaa
     3661 cggttgcaac aggagaaacg gttgcaacag gagaaacggt tgcaacagca gaaactcttg
     3721 caacagcaga aactcttgca acaggagaaa ctcttgcaac agcagaaact cttgcaacag
     3781 gagaaactct tgcaacagga gaaactcttg caacaggaga aacaattgca acaggagaaa
     3841 cacttgccac aggagcgaca gttgcaacag gataaagtct tcctacagct acgacagttg
     3901 caacagaaga aagaactgga ggagcagcga gagcgaaagc gccacctctt tgagcaacag
     3961 aaacagtttg tcctagaaaa attgcgccaa cagaaggagc agcatcgtcg tcagcaaaat
     4021 cgcgtaaaac gcgaacgtaa attgcgccag aaaaaggaga aacagcgctt ggaatacgaa
     4081 cgattcttga aggaatatag ggaggactgt aaacgtcagt tgcgtttgca gcgcgagcat
     4141 tatctgatca agattaagca gctggagaag gccagtcagc gctcgttgaa ggggaatcga
     4201 aagcacaagc tgatgcaaaa cgatatggtc agcataccgg tggccaattt gaacggcggc
     4261 cttaaagcgg ccagcagcgg ttccggagtt ggtgtagtga cctccggcgg cgtcgtatcc
     4321 tcggcggtgc tggccaatgc cccacgtgta tacctaacgc cctcctccac attcatgacc
     4381 aatcgccaaa tggcgggagt ggcgtccacc ggaagaatga gcggacaagt cgtcggtggt
     4441 tcatctggca cagcctcaac agccggtacc gttcgctatt tttcgcaatt cagcaaaatg
     4501 caaacggccg gcggacccag tttgcaaagg aaacttgcca acggggatac cattgttctg
     4561 gcaaccggca gtaaaaatat gttccttact agcagcgaaa ataaggctaa tctgccgacc
     4621 gtcgccagca atggcaatgg tctgatcaca gccaaaatgg atctattgga ggaggaggtc
     4681 atgcagtcga taactgtgat tgatgacgat gacgaggaga aaaaggaagt cgctgaagac
     4741 gaagaagaga gcagcaataa tgccaaaccc attgaccttc accagccaat tgctgataat
     4801 gagcacgagc tggacattgt gataaacaat gtggtctgct cgtttagcgt cggctgtcac
     4861 ctgaagctgc gcgaaattgc gctgcaggga tcaaatgtgg agtaccgtcg cgagaacgga
     4921 atggtgacaa tgaagctccg ccatccatac accactgcct cgatttggtc gtcggggagg
     4981 attacctgca ctggtgccac ttccgagtca atggccaagg tcgctgcacg ccgctatgcc
     5041 agatgccttg gcaagctggg atttcccact cgtttcctca actttcgcat tgtcaacgta
     5101 ctgggcacct gcagcatgcc gtgggccatc aagatcgtca acttttcgga gcgccatcgc
     5161 gagaacgcca gctacgagcc cgagctgcat cctggagtga cttacaagat gcgcgatccc
     5221 gatccaaagg ccaccctgaa gatcttctcc accggcagcg taacagtcac cgcggctagc
     5281 gtaaaccacg ttgaatcggc tatccagcac atatacccgc tggtctttga tttccgcaag
     5341 caacgttcgg cggaggagct gcagcatctg cgtcaaaagc agcgtctgca agccggcggt
     5401 gatccccacg aactggagaa aaatgtcttg gccgataaca agactgcttc ccttgataat
     5461 atctttgtta atacaacagc ggcgcactct aaatcatcgt cgaatgacca aacatcagca
     5521 cccgcgacca tcttgtccag cacagttgat agtatgcctc gtctgaaaca gatggtcaac
     5581 tatcaccaga tgatgaagca aacccaggaa gagcgccgcc atataatgtt taatggggag
     5641 aaggccaatc cggcctccac ctcatcggcg gcagcagctc cctccacctc ctcctcatcg
     5701 tcctcatccg gggataatat ctgtgccaat gcccgtcgcc gggccaccga atgctgggca
     5761 accaagctgc agaataagcg tccacgttac aatgatcccg gtaccacggg cacaattaac
     5821 gccgcatcgt ccacagcatc agccgccaca tcttcgttag cctcccaggc gacacatctg
     5881 cgtaatcctc tcaagacggc cgcgttggcc aatgcacgta tgttaggcgc caaggtgaca
     5941 acatgcacac gcaacagcat aatcgtgcag cagccgcaac gtatccaaat gcagcagcag
     6001 cagcaacagc tgcaaccgca gcagcaacag accagcttct cgcccagcga attcgatgtt
     6061 gatgacttga tcgaggagga ggagaacaac gaattggata tgcccttcta agctagcgct
     6121 gcccgtgcca aaaaaaaatt tcaactaaaa tggttcaaat cgatgatgaa acactacaac
     6181 actaaacacg ccacactcac aaatagccac gagcttcttt tcgaatttgt tggttattcg
     6241 ttcaagtcat ttttcatcac atttattttc gtgtgcttgc cgcatttaaa ctaaactcga
     6301 gaaagcctgg acaccgaagc gaaaagcacc cacagcgaag caacaacaac aaacaacaaa
     6361 caaaacaccg cagcaacaac aaaatcaaga gccaaatatt taaaatataa gatttacgtt
     6421 taaactactt tgtaagttaa gcgagcacac cagaaacaaa caagcagaga tagcgaatag
     6481 atgatttcga tcccgaagta tcccagaaac ctcaataaca tctagatggt aagcaaggga
     6541 gcttaccaca cggtaaacat aagtttagac ttaaagaaaa tacgtatgcg acagcgtttt
     6601 acgtatataa ccgaaatctg tggatagcct ggatgagtca ccatcaatca tcgcaattgc
     6661 aatcaattgt ggtgaaagta agagaacaca catgtagaac taatcaccag gacaggaaga
     6721 ggacgatacg agcaaggtgc ccaggcggat cggatctcgc agcttcctat cttattttaa
     6781 attttttttt gaagctgaac tccaattcag ttctggccaa gcaaactaca attctcaagt
     6841 aaaaatccgt ggagaggagg tggggccaga gaaaagccca ctaggatagt tatcaattat
     6901 ctgaagaaca actgattaat ttcttgtata ttcataggaa attttttttg ttttcgctat
     6961 aagtcctaca taataaatgc tatacataag tgctgcgtgt gggcgcataa caaacgaaac
     7021 gaaatgcgtt tgaatgcgat tataatatta atattattat gcatatatac aacacacaca
     7081 aatacctata tctggtcact tctaaccaat tataaacaaa actggaaaag c