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LOCUS NM_001103412 3377 bp mRNA linear INV 26-DEC-2023 E (CG44774), mRNA. ACCESSION NM_001103412 VERSION NM_001103412.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3377) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3377) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3377) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3377) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3377) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3377) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3377) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3377) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3377) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3377) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3377) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3377) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3377) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3377) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3377) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3377) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3377) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3377) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3377) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3377) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3377) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3377) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3377) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_001103412.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3377 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3377 /gene="CG44774" /locus_tag="Dmel_CG44774" /old_locus_tag="Dmel_CG4068" /old_locus_tag="Dmel_CR43698" /old_locus_tag="Dmel_CR43699" /gene_synonym="CG4068; CR43698; CR43699; Dmel\CG44774; hp-CG4068" /map="4D6-4D7" /db_xref="FLYBASE:FBgn0266000" /db_xref="GeneID:31424" CDS 589..2457 /gene="CG44774" /locus_tag="Dmel_CG44774" /old_locus_tag="Dmel_CG4068" /old_locus_tag="Dmel_CR43698" /old_locus_tag="Dmel_CR43699" /gene_synonym="CG4068; CR43698; CR43699; Dmel\CG44774; hp-CG4068" /note="CG44774 gene product from transcript CG44774-RE; CG44774-PE" /codon_start=1 /product="uncharacterized protein, isoform E" /protein_id="NP_001096882.1" /db_xref="FLYBASE:FBpp0309838" /db_xref="GeneID:31424" /db_xref="FLYBASE:FBgn0266000" /translation="MFNFHKPRVYRSADGCCICRAKSSSSRFTASRKYEKESMQCFNL NEPRNGEICNACVLLVKRYKRLPIGSKRHWGHVVDARAGPGTKSMAKQKKRDNADAKS RAANGSGNSFLPEKFAKNRKSKERAATEAAAARPSSLSLSTSAVNRPSSTSPTSDHQH SDSNESYDDEQTLPANKPYQTRKRTAAAALATANESKEPNNKRPKLTGSYRRRQLVPQ KNRRSVDNIPFFEENDLVRLEVCCGVVFQSLSLGSTYYIIDPELYKPCAKHQRIRHQQ MQLQLQHQQAEAVNATPTPTTTPTVTTNSSPHTTQVQSKVPTIGPLKKHHLFCKRQSG SFPQGEIHSISPIPMSKTETDGQPLSPKPHSTLSLILKPTVQMQQQQPQSQAQSQVVS VGAASPSSLSSLSNCSTSSSVATKFNDNSSDSGFDEHVLERKSVSPPTQDECKLRGTT GGRVQLILVSGLPLAGQSQNLMLAGNEFTARIVQQREAGIAAATAAGAGTGTPSTGAT PLKINVLGGSQGNSNKMRAIFNSASSIQHENGVTTIVPASSLAASNQTAAMNAIAPST VTITPSSVGKKVTVPNPKFILLKPAKFVGPASANEVNTATLTAEPHAPPPPQAKIV" misc_feature 592..1395 /gene="CG44774" /locus_tag="Dmel_CG44774" /old_locus_tag="Dmel_CG4068" /old_locus_tag="Dmel_CR43698" /old_locus_tag="Dmel_CR43699" /gene_synonym="CG4068; CR43698; CR43699; Dmel\CG44774; hp-CG4068" /note="Protein Family FAM60A; Region: FAM60A; pfam15396" /db_xref="CDD:464703" ORIGIN 1 gggtttctag cgtgcgcacg tgttttagtt gttctcctca actaacctta aatttgaaaa 61 ataaaaaaaa agtgatttaa attgcttcta attaaatagc aacaaaaatg tcggtttatc 121 tgagcacaaa tgcagccagc tacagtgaag cctggacaat ggatgttggc aatgcacgcg 181 ctcagaacaa cgggtgcaaa gggaaaaagc gcgcacaaat aacactagca caataacagt 241 gaacaccgtc gcagcacaca ccaaacacag aaacccgaat tgccactcaa aacactttcc 301 aaaaacaaag aagaaacatc attttaaatc aagcaaggaa agcaaaaaac attaaaagcg 361 taaaaaaaaa tagaaaaaaa gcattaaaag cgtaaaaaaa ggaaaaaaaa aaaaaaaaca 421 aaacattaaa agcgtcaaaa aaaaaaaaga ggaaaaaaac attaaaagcg taaaaaagag 481 agaaaaaaaa gaacaggaaa atatagtcat cgtaaatcat tgtgaaatct ccacggaaca 541 ttgaaaaccc aaatatcaaa accacaaaca tactccaata acaaagccat gttcaatttt 601 cataagccac gcgtctaccg ctctgcggat ggatgttgca tttgccgggc caagtcgagc 661 agctcgcgct tcaccgcctc ccgcaagtac gaaaaggagt cgatgcagtg ctttaatctt 721 aacgagcctc gaaatggtga aatctgcaac gcctgcgtcc ttttggtcaa gcgctacaag 781 cgactaccca taggtagtaa gcgtcactgg ggtcatgtgg tggatgcccg tgctggaccc 841 ggcaccaagt ccatggccaa acagaagaag cgcgacaacg cagacgcgaa gagcagggcc 901 gccaatggca gtggcaactc attcctgccc gagaagttcg ccaagaaccg caagagcaag 961 gagagagcgg cgactgaagc agcagcagca agaccatcat cattatcatt atcgaccagt 1021 gctgtaaatc gacctagcag cacttcaccc acctcggatc atcagcacag cgattcgaat 1081 gagagctacg atgatgagca gacgctgccg gcaaataaac catatcaaac gcgcaagcga 1141 accgcggctg ccgcactagc gactgccaac gaatcgaagg agcccaacaa caaacgtccg 1201 aagttaaccg gcagctaccg acgtcgtcag ctggtgccac aaaagaatcg tcggtccgtc 1261 gacaatatcc ccttcttcga ggaaaatgat ctcgttcgcc tggaggtctg ttgcggtgtg 1321 gtcttccaga gtttatccct cggcagcact tactacatca tcgatccgga gctgtacaaa 1381 ccgtgtgcga agcaccagcg catacgccac cagcagatgc agcttcagct gcaacatcag 1441 caggcggagg cggtaaatgc cactccaacc cccacgacca ctccaacggt cacgaccaac 1501 tcatcgccac acaccactca agttcaaagt aaggtgccaa cgattgggcc acttaagaag 1561 catcatttgt tctgcaagcg acaatcgggg tcatttccgc aaggtgaaat ccatagcata 1621 agtccaattc caatgagcaa gactgaaacg gacggccaac cactgtcgcc gaagccacat 1681 tccactctgt ccctgatcct caagcccacc gtccaaatgc aacaacagca accacagtcg 1741 caggcccaga gccaagtggt ctccgtgggc gctgcgtcgc cctcgtcgct gtcctccttg 1801 tccaactgct ccacctcgtc ctcggtggcc accaagttca acgacaattc ctcggattcg 1861 ggattcgatg agcatgtgct agagcgcaag tcggtcagcc caccaacgca ggacgagtgc 1921 aaactgcgcg gaaccacggg tggcagggtg cagctaatcc tagtcagcgg cctgcctctg 1981 gctggacaat ctcagaatct gatgctggcg ggcaacgagt ttacggcacg tattgtgcag 2041 caaagagaag ccggaattgc agctgcaacc gcagccggag ccggaaccgg tactccatcg 2101 acaggagcaa ccccactcaa aatcaacgta cttggcggat ctcagggcaa tagcaataaa 2161 atgcgtgcta tattcaatag cgccagcagc attcagcatg agaacggcgt gaccaccatt 2221 gtgccagcct cctcgttggc agccagcaat caaacagctg ccatgaacgc aattgcgccg 2281 agcacggtga ctataacgcc gtcatcggtg ggcaaaaagg tgacggtgcc aaatcccaag 2341 tttatcctgc tgaagccagc caaatttgtg ggaccagcat cggcaaacga ggtaaacaca 2401 gcgactctga cggcggaacc acatgctcct ccccctccac aagccaaaat cgtataggcg 2461 attgaaaacg aaagagagag agatagatag gagatgtcta gcgtctcgca gggaatatag 2521 taaccaccct gttacgtttg ttatacacta agctatttaa cggcgaccga aagccaagct 2581 cccttcctta gccgcaggtt ccatatcatt caagagtaat atttaacatt tcaaggaaca 2641 ccttagccta gacgttactt tagcctagac tagagcactg aactacagta tgggcgaatg 2701 agtccacgca aaactcacac ccacacagag ccatacaaat tgtaacaatt attagtgtgt 2761 taattgttta atgtagcgcc ccggtagcct gtagtttgac tccaacaagt tcgctcctgg 2821 cgcttcacag gcgctggaaa atcttaaccg ccggaagtca cttccgctgg ctttgatttt 2881 ccagcgtcag tcaagcggaa ggagggactt gtttgagtcc aactacagga tactgggggg 2941 cccttaagaa cagaatgggg aatgagtcca cgcaaaacac acacccacac acacacagaa 3001 ccatacaaat tgtaaccatt atttgagtgt taattgttga ctgtagcgcc ctggtagcct 3061 gtagtttgac tccaacaagt tcgctcctgg cgcttcacag gcgctggaaa atcttaaccg 3121 ccggaagtca cttccgctgg ctttgatttt ccagcgtcag tcaagcggaa ggagggactt 3181 gtttgagtcc aactacagga tactgggggg cccttaagaa cagaatgggg aatgagtcca 3241 cgcaaaacac acacccacac acacacagaa ccatacaaat tgtaaccatt atttgagtgt 3301 taattgttga ctgtagcgcc ctggtagcct gtagtttgac tccaacaagt tcgctcctgg 3361 cgcttcacag gcgctgg